Purification and sequencing of a mate-recognition protein from the copepod<Emphasis Type="Italic"> Tigriopus japonicus</Emphasis>

Male copepods in the genus Tigriopus use surface proteins of female copepods to recognize appropriate mates. In a previous study of pre-copulatory mate-guarding in T. japonicus Mori, a monoclonal antibody was developed against one protein that contributed to the attractiveness of female T. japonicus as mate-guarding partners. In the present study, which was performed between December 1998 and November 2000, the antibody was used to purify two proteins from homogenates of pooled T. japonicus. A 70 kD protein was partially sequenced using mass spectrometry, revealing sequence similarity to α₂-macroglobulin. It was shown that the 70 kD protein was highly expressed in stage CV females, the most attractive stage for mate-guarding. A purified 36 kD protein was also shown to be a cognate of α₂-macroglobulin. Because the structure of both the 70 and 36 kD proteins suggested that protease activity and its inhibition might play a role in male mate choice, three protease inhibitors were tested in bioassays of male discrimination of conspecifics. The male's ability to discriminate among females was not completely blocked by the protease inhibitor, but their behavior was affected in more subtle ways. This suggests that the 70 kD protein, designated CSP70, is a variant of α₂-macroglobulin, but with more specific activity.     

Flow cytometric assessment of the effects of chlorine,chloramine, and UV on bacteria by using nucleic acid stains and 5-cyano-2,3-ditolyltetrazolium chloride

Flow cytometry (FCM) has been widely used in multi-parametric assessment of cells in various research fields, especially in environmental sciences. This study detected the metabolic activity of Escherichia coli and Staphylococcus aureus by using an FCM method based on 5-cyano-2,3-ditolyltetrazolium chloride (CTC); the accuracy of this method was enhanced by adding SYTO 9 and 10%R2A broth. The disinfection effects of chlorine, chloramine, and UV were subsequently evaluated by FCM methods. Chlorine demonstrated stronger and faster destructive effects on cytomembrane than chloramine, and nucleic acids decomposed afterwards. The metabolic activity of the bacteria persisted after the cytomembranewas damaged as detected using CTC. Low-pressure (LP) UV or medium-pressure (MP) UV treatments exerted no significant effects on membrane permeability. The metabolic activity of the bacteria decreased with increasing UV dosage, and MP-UV was a stronger inhibitor of metabolic activity than LP-UV. Furthermore, the membrane of Gram-positive S. aureus was more resistant to chlorine/chloramine than that of Gram-negative E. coli. In addition, S. aureus showed higher resistance to UV irradiation than E. coli.

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Impact of logging activities in a tropical mangrove on ecosystem diversity and sediment heavy metal concentrations

Productivity of mangrove ecosystems is compromised by anthropogenic activities including over-exploitation of wood. This study set out to understand how different wood harvesting regimes have affected the biodiversity of a tropical ecosystem and to identify relationships between the heavy metal concentrations in the mangrove sediments and tree felling. Soil samples were collected and plant diversity studies carried out on seven sites in the mangrove. Physico-chemical, chemical and mineralogical analyses were done on soil samples and plant population structure, species richness, evenness and diversity index at these sites were calculated. Results showed that soils across sites were characteristically clayey and acidic, with high organic matter content. Minerals identified included quartz, gibbsite, goethite, hematite and kaolinite. Heavy metal concentrations were higher in Sites 6 and 7 with a longer history of anthropogenic activity. There were strong negative correlations between the duration of logging and NO₃-N (r = ?0.838, p = 0.019), total N (r = ?0.837, p = 0.019), NH₄ ⁺-N (r = ?0.844, p = 0.017), Mg = (?0.789, p = 0.035), K (r = ?0.819, p = 0.024), and Na (r = ?0.988, p = 0.002). Sites which had experienced logging for longer periods (sites 3, 6, and 7) had lower nutrient content and lower values for species richness and diversity index. Logging in mangrove ecosystems could alter soil characteristics, decreasing plant diversity and abundance. Logging dynamics around mangrove ecosystems should be considered in the wider strategy for management and conservation of similar mangrove ecosystems.     

Development of similarity relationships for energy dissipation rate and temperature structure parameter in stably stratified flows: a direct numerical simulation approach

In this study, a newly developed direct numerical simulation (DNS) solver is utilized for the simulations of numerous stably stratified open-channel flows with bulk Reynolds number (Re _b ) spanning 3400–16,900. Overall, the simulated bulk Richardson number (\(Ri_b\)) ranges from 0.08 (weakly stable) to 0.49 (very stable). Thus, both continuously turbulent and (globally) intermittently turbulent cases are represented in the DNS database. Using this comprehensive database, various flux-based and gradient-based similarity relationships for energy dissipation rate (ε) and temperature structure parameter (\(C_T^2\)) are developed. Interestingly, these relationships exhibit only minor dependency on Re _b . In order to further probe into this Re _b -effect, similarity relationships are also estimated from a large-eddy simulation (LES) run of an idealized atmospheric boundary layer (very high Re _b ) case study. Despite the fundamental differences in the estimation of ε and \(C_T^2\) from the DNS- and the LES-generated data, the resulting similarity relationships, especially the gradient-based ones, from these numerical approaches are found to be remarkably similar. More importantly, these simulated relationships are also comparable, at least qualitatively, to the traditional observational data-based ones. Since these simulated similarity relationships do not require Taylor’s hypothesis and do not suffer from mesoscale disturbances and/or measurement noise, they have the potential to complement the existing similarity relationships.     

Effect of MS-222 on response to light and rate of metabolism of the little skate Raja erinacea

The effect of tricaine methanesulfonate (MS-222) on the standard (SMR) and routine (RMR) metabolic rates of Raja erinacea was estimated from oxygen-consumption measurements. Data were gathered from a computerized, flow-through respirometry system. Individual trials were run for 96 h at 10 °C on anesthetized and untreated fish. The resulting rates, SMR = 20.1 ± 1.99 SE and RMR = 48.3± 2.5 SE mg O₂ kg⁻¹ h⁻¹, for an unanesthetized skate of 0.5 kg standardized weight, are the lowest reported for any elasmobranch. Periodogram analysis revealed a significant light-response component to the oxygen consumption of these fish, indicating a pattern of nocturnal and crepuscular activity. This activity pattern was disrupted in skates subjected to anesthesia. The use of low-dosage MS-222 in conjunction with the respirometry trials provides positive preliminary evidence that this technique may be useful in giving quick, accurate estimates of SMR in the more intractable elasmobranch fishes. Received: 15 January 1997 / Accepted: 6 February 1997     

Numerical simulation and optimization study of the wind flow through a porous fence

Three turbulence closure models (RNG k-ε, SST k-ω and RSM) were used to investigate the flow characteristics around a two-dimensional isolated porous fence. The comparison between the numerical results and the experimental measurements indicated that RSM model shows a better performance than the other two models. The aim of this paper is to accurately and efficiently determine the optimum porosity that attain the best shelter effect of the wind fence in the near wake region (0–4h_b) and in the far wake region (4h_b–10h_b) respectively, where h_b is the height of the fence. The gradient algorithm was adopted as the optimization algorithm and the RSM model was used to model turbulent features of the flow. The shelter effect was parameterized by the peak velocity ratio involving velocity and turbulence. The objective was to reduce the peak velocity ratio in the near or far wake region by changing the design variable porosity (?) of the fence, which ranged between 2 and 60%. The results revealed that a porosity of 10.2% was found as the optimum value giving rise to the best shelter effect in the near wake region, and ? = 22.1% was determined in the case of the far wake region. In addition, based on the proposed optimization method, it is found that the recirculating bubble behind the fence can only be detected when ? < 29.9%.     

<Emphasis Type="Italic">Corymbia</Emphasis> phloem phenolics,tannins and terpenoids: interactions with a cerambycid borer

Plant secondary chemistry mediates the ability of herbivores to locate, accept and survive on potential host plants. We examined the relationship between attack by the cerambycid beetle Phoracantha solida and the chemistry of the secondary phloem (inner bark) of two differentially attacked plantation forestry taxa, Corymbia variegata and its hybrid with C. torelliana. We hypothesised that this differential rate of attack may have to do with differences in secondary chemistry between the taxa. We found differences in the bark chemistry of the taxa, both with respect to phenolic compounds and terpenoids. We could detect no difference between bored and non-bored C. variegata trees (the less preferred, but co-evolved host). Hybrid trees were not different in levels of total polyphenols, flavanols or terpenes according to attack status, but acetone extracts were significantly different between bored and non-bored trees. We propose that variations in the bark chemistry explain the differential attack rate between C. variegata and the hybrid hosts.     

Bioaccumulation of essential metals (Co,Mn and Zn) in the king scallop <Emphasis Type="Italic">Pecten maximus</Emphasis>: seawater,food and sediment exposures

In order to understand the bioaccumulation of essential metals in filter-feeding mollusks living in soft sediments, the uptake and depuration kinetics of three elements (Co, Mn and Zn) were investigated in the king scallop Pecten maximus exposed via seawater, food, or sediment, using radiotracer techniques. The scallops were collected in April 2005 in the Pertuis Breton, France and acclimated to laboratory conditions for 8 weeks prior to the experimental exposures. Dissolved metals were efficiently bioconcentrated with mean concentration factors (CFs) ranging from 65 (Co) to 94 (Mn) after 7 days of exposure. Feeding experiments using microalgae Skeletonema costatum (diatom) or Isochrysis galbana (flagellate) showed that metal assimilation efficiency (AE) and retention (T _b½) were strongly influenced by food source. For Co, AE was higher when ingested with I. galbana (29 vs. 4%), whereas Mn and Zn AE was higher for S. costatum (82 vs. 44% and 86 vs. 68%, respectively). Transfer factors (TFs) in P. maximus exposed to radiolabelled sediment were 3–4 orders of magnitude lower than CFs. Nevertheless, the fraction of sediment-bound metals that was taken up was efficiently absorbed in scallop tissues (>85%). Whatever the exposure pathway, metals were strongly retained in the kidneys of P. maximus. Due to poor determination of Mn biokinetics (and related parameters) in scallops exposed through sediment, the relative contribution of the three different pathways could be determined only for Co and Zn using a biodynamic model. The particulate pathway (i.e. food or sediment) appeared to be the main route for bioaccumulation of both metals in this scallop. In addition, even though P. maximus displayed different AEs for Co and Zn according to the food, results of the model were only slightly affected, if any, by change in the dietary parameters (AE and depuration rate constant, k _e).     

Phytotoxic effects of phenolic acids from <Emphasis Type="Italic">Merostachys riedeliana,</Emphasis> a native and overabundant Brazilian bamboo

Merostachys riedeliana Rupr. is a native and overabundant bamboo species in the Brazilian Atlantic Forest. Moderate to strong allelopathic activity may be one mechanism that explains this super-dominance and the changes in structure and composition of forest areas occupied by bamboo. This study evaluated the phytotoxic effect of M. riedeliana extracts and fractions and identified their putative allelochemicals. We investigated the presence of allelochemicals in soil collected from stands occupied by M. riedeliana. Furthermore, we evaluated the putative effect of tree allelochemicals, individually and combined, on germination and growth. The aqueous extract of leaves and its ethyl acetate fraction presented the highest inhibitory effects on seed germination and seedling growth. The effect of the extracts and fractions on the target species was species-specific. Neither the individual nor the combined phenolic acids significantly inhibited seed germination; however, a pronounced growth inhibition was observed in M. bimucronata seedlings treated with vanillic acid and in E. verna and M. bimucronata seedlings treated with combined phenolic acids. Isovitexin, vitexin, isoorientin, orientin, and their O-glycoside derivatives, the lactonic dimer of the p-hydroxybenzoic acid and 3,4-methylenedioxymandelic acid were identified in the aqueous extracts and ethyl acetate fraction by Liquid Chromatography-Diode Array Dectector/Electrospray Ionization/Mass Spectrometry (LC-DAD/ESI–MS/MS). The Gas Chromatography-Mass Spectrometer (GC–MS) profile of the same extract and fraction showed the presence of benzoic, benzeneacetic, salicylic, p-hydroxybenzoic, p-hydroxyphenylacetic, vanillic, p-coumaric, protocatechuic, syringic, gallic, m-coumaric vanillylmandelic, 4-methylmandelic, 3,4-methylenedioxymandelic and trans-ferulic acids. The p-benzoic acid and the apigenin 6-C-glucoside (isovitexin) were identified in the soil extract collected from under bamboo-growing areas. Even though laboratory bioassays are not completely predictive of the allelopathic effects that occur in nature, the results of this study provide preliminary evidence of allelopathy as a possible species-specific inhibition mechanism of native species that explain the impoverishment of floristic richness and the functional groups in areas where M. riedeliana is overabundant.     

Diffusional mass transfer coefficient at the water–sediment interface for wind-induced flow in very shallow lagoons

Very shallow lagoons that are a few centimeters deep are common in the arid Andes of Northern Chile, Argentina, Bolivia and Perú. The dynamics of these lagoons are dominated by the water–sediment interface (WSI) and strong afternoon winds. Although many studies have examined the diffusional mass transfer coefficients (k _t ) of open channel flows, estimates for wind-induced flows are still unknown. The aim of this article is to propose and validate an analytical expression for computing k _t at the WSI for wind-induced flow. The laboratory measurements were conducted in a wind tunnel with a water tank of variable depth located at its downwind end. Natural muddy sediments were placed in the middle of the tank so that the dissolved oxygen (DO) was consumed in the sediments. The diffusional mass transfer coefficient that characterizes the DO uptake in the sediment was obtained from DO micro-profiles measured with an OX-25 Unisense microelectrode. Water velocity profiles were measured with a 2D side-view Sontek acoustic doppler velocimetry (ADV), and the wind shear velocity was computed based on wind velocity profiles that were measured with an Extech hot-wire anemometer. A total of 16 experiments were conducted with different water depths and wind shear stresses. The constants required by the model were determined from these experiments, and the analytical expression was successfully validated by the laboratory observations. The analytical expression obtained for computing k _t was also validated with field observations that were conducted in October, 2012, in Salar del Huasco, Northern Chile (20.274° S, 68.883° W, 3800 m above sea level). The comparison between the observed and predicted values of k _t provides a determination coefficient of r ² = 0.48 and a p value < 0.01. The results show that the value of k _t for wind-induced flow is proportional to the wind shear velocity and the inverse of the Reynolds number of the wind-induced current.     

Designing environmental monitoring networks to measure extremes

This paper discusses challenges arising in the design of networks for monitoring extreme values over the domain of a random environmental space-time field {X _ij } i = 1, . . . , I denoting site and j = 1, . . . denoting time (e.g. hour). The field of extremes for time span r over site domain i = 1, . . . ,I is given by \(\{Y_{i(r+1)}=\max_{j=k}^{k+n-1} X_{ij}\}\) for k = 1 + rn, r = 0, . . . ,. Such networks must not only measure extremes at the monitored sites but also enable their prediction at the non-monitored ones. Designing such a network poses special challenges that do not seem to have been generally recognized. One of these problems is the loss of spatial dependence between site responses in going from the environmental process to the field of extremes it generates. In particular we show empirically that the intersite covariance Cov(Y _i(r+1),Y _i′(r+1)) can generally decline toward zero as r increases, for site pairs i ≠ i′. Thus the measured extreme values may not predict the unmeasured ones very precisely. Consequently high levels of pollution exposure of a sensitive group (e.g. school children) located between monitored sites may be overlooked. This potential deficiency raises concerns about the adequacy of air pollution monitoring networks whose primary role is the detection of noncompliance with air quality standards based on extremes designed to protect human health. The need to monitor for noncompliance and thereby protect human health, points to other issues. How well do networks designed to monitor the field monitor their fields of extremes? What criterion should be used to select prospective monitoring sites when setting up or adding to a network? As the paper demonstrates by assessing an existing network, the answer to the first question is not well, at least in the case considered. To the second, the paper suggests a variety of plausible answers but shows through a simulation study, that they can lead to different optimum designs. The paper offers an approach that circumvents the dilemma posed by the answer to the second question. That approach models the field of extremes (suitably transformed) by a multivariate Gaussian-Inverse Wishart hierarchical Bayesian distribution. The adequacy of this model is empirically assessed in an application by finding the relative coverage frequency of the predictive credibility ellipsoid implied by its posterior distribution. The favorable results obtained suggest this posterior adequately describes that (transformed) field. Hence it can form the basis for designing an appropriate network. Its use is demonstrated by a hypothetical extension of an existing monitoring network. That foundation in turn enables a network to be designed of sufficient density (relative to cost) to serve its regulatory purpose.     

Effects of phosphorus sources on volatile organic compound emissions from <Emphasis Type="Italic">Microcystis flos</Emphasis>-<Emphasis Type="Italic">aquae</Emphasis> and their toxic effects on <Emphasis Type="Italic">Chlamydomonas reinhardtii</Emphasis>

There is diverse phosphorus (P) in eutrophicated waters, but it is considered as a crucial nutrient for cyanobacteria growth due to its easy precipitation as insoluble salts. To uncover the effects of complex P nutrients on the emission of volatile organic compounds (VOCs) from cyanobacteria and their toxic effects on other algae, the VOCs from Microcystis flos-aquae supplied with different types and amount of P nutrients were analyzed, and the effects of VOCs and their two main compounds on Chlamydomonas reinhardtii growth were investigated. When M. flos-aquae cells were supplied with K₂HPO₄, sodium pyrophosphate and sodium hexametaphosphate as the sole P source, 27, 23 and 29 compounds were found, respectively, including furans, sulfocompounds, terpenoids, benzenes, aldehydes, hydrocarbons and esters. With K₂HPO₄ as the sole P source, the VOC emission increased with reducing P amount, and the maximum emission was found under Non-P condition. In the treatments of M. flos-aquae VOCs under Non-P condition and two main terpenoids (eucalyptol and limonene) in the VOCs, remarkable decreases were found in C. reinhardtii cell growth, photosynthetic pigment content and photosynthetic abilities. Therefore, we deduce that multiple P nutrients in eutrophicated waters induce different VOC emissions from cyanobacteria, and P amount reduction caused by natural precipitation and algal massive growth results in more VOC emissions. These VOCs play toxic roles in cyanobacteria becoming dominant species, and eucalyptol and limonene are two toxic agents.     

Temporal analysis of population genetic composition in the overexploited Japanese eel <Emphasis Type="Italic">Anguilla japonica</Emphasis>

The Japanese eel has dramatically declined in Asia since the 1970s. Over the past two decades, glass eel productivity in Taiwan has decreased, but is highly variable among each year catch, though the cause for this is unknown. The impact of both population decline and instability on genetic diversity, however, is unknown. In this study, we investigated changes in allele frequencies of Japanese eel recruitment events over the past 20 years using six polymorphic microsatellite DNA loci. Specimens of glass eels were collected yearly from a single location in northern Taiwan from 1986 to 2007. Overall genetic differentiation among all samples was very low but significant (F_ST = 0.002, P = 0.002), and only 2 out of 120 pairwise tests were significant. The relationship between genetic and temporal distance showed a slight but insignificant correlation (R² = 0.03, P = 0.0504). There were no overall significant differences in allelic richness (P = 0.35) or genetic heterozygosity (P = 0.73) among annual recruitment events. No apparent loss of genetic diversity and occurrence of a genetic bottleneck for eel populations were observed. Estimates of the effective population size (N_e) generally exceeded 500, although confidence intervals were very wide. While El Niño /Southern Oscillation (ENSO) events had little impact on genetic diversity, they may account for the annual fluctuation in glass eel catch. These results indicate long-term stability of genetic diversity in the Japanese eel with little evidence for sweepstakes recruitment.     

Geo-accumulation index and contamination factors of heavy metals (Zn and Pb) in urban river sediment

The aim of the present study was to appraise the levels of heavy metal contamination (Zn and Pb) in sediment of the Langat River (Selangor, Malaysia). Samples were collected randomly from 15 sampling stations located along the Langat River. The parameters measured were pH, redox potential, salinity, electrical conductivity, loss of ignition, cation exchanges capacity (Na, Mg, Ca, K), and metal ions (Zn and Pb). The geo-accumulation index (I _geo) and contamination factor (C _f) were applied to determine and classify the magnitude of heavy metal pollution in this urban river sediment. Results revealed that the I _geo of Pb indicated unpolluted to moderately polluted sediment at most of the sampling stations, whereas Zn was considered to be within background concentration. The I _geo results were refined by the C _f values, which showed Pb with very high C _f at 12 stations. Zinc, on the other hand, had low to moderate C _f values. These findings indicated that the sediment of the Langat River is severely polluted with Pb. The Zn concentration at most sampling points was well below most sediment quality guidelines. However, 40% of the sampling points were found to have a Pb concentration higher than the consensus-based probable effect concentration of 128 mg/kg (concentrations above this value are likely to cause harmful effects). This result not only highlights the severity of Pb pollution in the sediment of the Langat River, but also the potential risk it poses to the environment.     

Effect of diet and paralarval development on digestive enzyme activity in the cephalopod <Emphasis Type="Italic">Robsonella</Emphasis><Emphasis Type="Italic">fontaniana</Emphasis>

This study aims at establishing the maturation of the digestive system in Robsonella fontaniana by means of measuring the digestive enzyme activity in paralarvae after hatching. Different groups of newly hatched paralarvae were fed with Artemia sp. (FA), Lithodes santolla zoea (FL) or were starved to serve as negative control (ST), the experimental period lasted 27 days after hatching (DAH). The semi-quantitative assay api^® ZYM (bioMérieux, France) was used to identify the pool of digestive enzymes present in paralarvae prior to selecting the specific enzymes acid phosphatase, total protease, trypsin and chymotrypsin for analysis. Mortality and larval protein content were also measured during the experiment. The survival of R. fontaniana hatchlings differed depending on the quality of the diet offered (ST < FA < FL), the same trend was observed with respect to paralarval protein content. Total protease and acid phosphatase activities were not related to either time of development or diet (P < 0.05). However, the activity of trypsin and chymotrypsin after DAH 10 was dependent on diet (P < 0.05). Paralarvae fed with Lithodes zoea (FL) performed better than paralarvae in the other two groups, exhibiting lower mortality, higher protein content and the highest proteolytic activity for trypsin and chymotrypsin. The results indicate that Lithodes-larvae are a better diet for R. fontaniana paralarvae than Artemia sp.     

Titanium dioxide nanoparticles induce bacterial membrane rupture by reactive oxygen species generation

Nano-titania is widely used in the food industry due to its efficient antimicrobial activity. However, the mechanism of microbial toxicity of nano-titania is poorly known. Here, nano-TiO₂ has been fabricated by microwave-irradiation chemistry, a new method, and then tested for antimicrobial activity. Mutagenicity of nano-TiO₂ was evaluated using Salmonella typhimurium histidine-auxotrophic strains. The reactive oxygen generation test was performed using 2,7-dichlorofluorescein diacetate dye. To test membrane permeabilization, E. coli cultures were grown in nutrient broth at an optical density of 0.3–0.5 at 610 nm, harvested by centrifugation at 11,000g for 10 min, washed and resuspended in 0.5 % NaCl solution. We also analyzed superoxide formation and membrane integrity, and we used scanning electron microscopy. Results show that nano-TiO₂ has a minimum inhibitory concentration of 15 µg/mL, and a minimum bactericidal concentration of 20 µg/mL for E. coli. The bacterial inner wall was ruptured, and cytoplasmic content was released after 5 min of treatment in a dose-dependent manner. Notably, superoxide formation was not observed, which establishes the fact that reactive oxygen generation and alteration of membrane integrity, as well as permeability, is the major mechanism of antimicrobial activity of nano-TiO₂.     

Impacts of n-alkane concentration on soil bacterial community structure and alkane monooxygenase genes abundance during bioremediation processes

Petroleum hydrocarbons, mainly consisting of n-alkanes and polycyclic aromatic hydrocarbons (PAHs), are considered as priority pollutants and biohazards in the environment, eventually affecting the ecosystem and human health. Though many previous studies have investigated the change of bacterial community and alkane degraders during the degradation of petroleum hydrocarbons, there is still lack of understanding on the impacts of soil alkane contamination level. In the present study, microcosms with different n-alkane contamination (1%, 3% and 5%) were set up and our results indicated a complete alkane degradation after 30 and 50 days in 1%- and 3%-alkane treatments, respectively. In all the treatments, alkanes with medium-chain length (C₁₁-C₁₄) were preferentially degraded by soil microbes, followed by C₂₇-alkane in 3% and 5% treatments. Alkane contamination level slightly altered soil bacterial community, and the main change was the presence and abundance of dominant alkane degraders. Thermogemmatisporaceae, Gemmataceae and Thermodesulfovibrionaceae were highly related to the degradation of C₁₄- and C₂₇-alkanes in 5% treatment, but linked to alkanes with medium-chain (C₁₁-C₁₈) in 1% treatment and C₂₁-alkane in 3% treatment, respectively. Additionally, we compared the abundance of three alkane-monooxygenase genes, e.g., alk_A, alk_P and alk_R. The abundance of alk_R gene was highest in soils, and alk_P gene was more correlated with alkane degradation efficiency, especially in 5% treatment. Our results suggested that alkane contamination level showed non-negligible effects on soil bacterial communities to some extents, and particularly shaped alkane degraders and degrading genes significantly. This study provides a better understanding on the response of alkane degraders and bacterial communities to soil alkane concentrations, which affects their biodegradation process.

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Heterologous expression of <Emphasis Type="Italic">LamA</Emphasis> gene encoded endo-β-1,3-glucanase and CO<Subscript>2</Subscript> fixation by bioengineered <Emphasis Type="Italic">Synechococcus</Emphasis> sp. PCC 7002

The gene for the catalytic domain of thermostable endo-β-1,3-glucanase (laminarinase) LamA was cloned from Thermotoga maritima MSB8 and heterologously expressed in a bioengineered Synechococcus sp. PCC 7002. The mutant strain was cultured in a photobioreactor to assess biomass yield, recombinant laminarinase activity, and CO₂ uptake. The maximum enzyme activity was observed at a pH of 8.0 and a temperature of 70°C. At a CO₂ concentration of 5%, we obtained a maximum specific growth rate of 0.083 h^–1, a biomass productivity of 0.42 g?L^–1?d^–1, a biomass concentration of 3.697 g?L^–1, and a specific enzyme activity of the mutant strain of 4.325 U?mg^–1 dry mass. All parameters decreased as CO₂ concentration increased from 5% to 10% and further to 15% CO₂, except enzyme activity, which increased from 5% to 10% CO₂. However, the mutant culture still grew at 15% CO₂ concentration, as reflected by the biomass productivity (0.26 g?L^–1?d^–1), biomass concentration (2.416 g?L^–1), and specific enzyme activity (3.247 U?mg^–1 dry mass).

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Mechanisms of cross-shelf transport of crab megalopae inferred from a time series of daily abundance

From 20 July 1982 to 19 July 1984, crab megalopae were trapped daily from the Scripps Institution of Oceanography pier. Pachygrapsus crassipes, Portunus xantusii, Cancer spp., Hemigrapsus spp., and Majid crab megalopae dominated the catch. Yearly, seasonal, and daily variations in the magnitude of the catch were observed. Yearly and seasonal variations were probably due to a strong El Niño event that occurred during the study and to the timing of spawning and duration of the larval phase, respectively. Daily variation was correlated with oceanographic processes that can transport larvae to shore. Catch of some taxon during some seasons correlated with wind stress suggesting that transport was wind driven. The correlations were, however, weak and the sign of the correlation varied between years. The maximum daily tidal range was significantly correlated (cross-correlations and cross Fourier analysis) to both daily seawater temperature anomalies (surface and bottom) and daily catch of crab megalopae in all taxa enumerated. Significant correlations between tidal range and temperature anomalies suggest that temperature anomalies were primarily due to the shoreward transport of warm and cold water by the internal tides. The consistent and relatively strong relationship between tidal range and catch of megalopae (the cross-Fourier analysis suggests that from 20 to >90% of the variation in catch can be attributed to variation in the tidal range) suggest that much of the shoreward transport of megalopae was via the internal tides. Shoreward transport of larvae by internal tides may be due to internal cold bores or convergences over large tidally generated internal waves (solitons). Peak catches of megalopae, however, were often not associated with cold anomalies suggesting that transport was due to moving convergences over internal waves.     

Study of flow formed by three coplanar impinging pipe jets at inclination angles of 30° and 45°

This paper presents an experimental study of the interactions of three fully-submerged, coplanar impinging jets issued from long pipes. The jets were neutrally buoyant and were arranged symmetrically about the axis of a central jet, with two side jets set to intersect with the central jet at two inclination angles (30° and 45°) and three Reynolds numbers (4240, 6400 and 8000). Measurements of the flow fields were performed using particle image velocimetry to examine the flow structures in various planes, i.e., the jet axis plane (X–Y), the jet normal plane (X–Z) and the cross-sectional plane (Y–Z). This flow configuration results in pronounced interactions among the three jets, and hence better mixing than that of a canonical single pipe jet as illustrated by augmented centreline velocity decay, spreading rate and turbulence level. The jets at the inclination angle of 45° impinge and mix more rapidly than those at 30°. For each case, the flow is highly 3-dimensional, and jet development displayed several distinct regions (converging, merging and combining) along the streamwise direction. The expansion of flow in the X–Y plane is similar to the shape of a hyperbola with necking formed immediately downstream of the impinging point, whereas that in the X–Z plane assumes the shape of a parabola with an open rim exhibiting a pronounced velocity deficit in the central part of the combining flow. Self-similarity of streamwise mean velocity is explored in the combining region of the flow on the two planes of symmetry (X–Y and X–Z). Flow development in the combining region is dominated by large-scale vortical structures, including von Kárman-like spanwise vortices in the X–Y plane and secondary circulation in the form of two pairs of counter-rotating streamwise vortices in the Y–Z plane.