Early succession arthropod community changes on experimental passion fruit plant patches along a land-use gradient in Ecuador

Many tropical landscapes are today characterized by small forest patches embedded in an agricultural mosaic matrix. In such highly fragmented landscapes, agroforests have already been recognized as refuges for biodiversity but few studies have investigated the potential of non-forested land-use types to contribute to overall biodiversity of functionally important taxa in the tropics. This study experimentally investigated species richness, abundance, and community similarity of arthropods on Yellow Passion fruit plants, planted in standardized patches in 30 sites along a land-use intensity gradient. The gradient comprised all major land-use types of the area: forest fragments, abandoned coffee agroforests, coffee agroforests managed under shade trees, pastures, and rice fields in Coastal Ecuador. We found a total of 2123 individuals belonging to 242 species. Overall arthropod species richness increased with light intensity and leaf-surface area and decreased with land-use intensity: forest fragments and abandoned coffee agroforests harboured significantly more species than rice or pastures. Overall diversity in managed coffee agroforests was intermediate between the intensively managed and more natural habitats. However, the three most abundant taxa of arthropods (ants, spiders, and beetles) had the highest number of species in managed coffee agroforests, while ant abundance was highest in abandoned coffee agroforests and spider abundance highest in managed coffee agroforests. Analyses of community similarity revealed that open (pasture, and rice) and shaded (forest, abandoned and managed coffee agroforests) land-use types had distinct arthropod communities. In conclusion, although open agricultural land-use types tend to have fewer species in lower numbers, all land-use types contribute to overall biodiversity of the agricultural matrix because of distinct communities in shaded vs. non-shaded land-use types.     

Agricultural intensification within agroforestry: The case of coffee and wood products

Compared to the environmental and conservation value as refuges for biodiversity, less is known about the social and economic value of shaded coffee systems. The agroforestry system can serve as a source of non-coffee products for diverse purposes. This study focuses on the role of shade trees in smallholder coffee farms, examining the wood products derived from the shaded coffee system. Data presented from surveys with 185 growers in Peru and 153 growers in Guatemala show that the consumption and sale of all non-coffee products account for a fifth to a third of the total value realized from the agroforestry system. Fuelwood and construction materials account for much of this value. Differences seen between countries can be traced to agricultural intensification – the degree to which the coffee agroforestry system is “technified” (i.e., managed with a reduced shade tree cover and diversity, high-yielding cultivars, agrochemical inputs, etc.) – as well as the relative demand for wood resources and farmers’ access to natural forest systems.     

Biodiversity,profitability, and vegetation structure in a Mexican coffee agroecosystem

We studied the relationships of bird and small mammal species richness, composition, and abundance to vegetation structure and economic profitability across a coffee intensification gradient in central Veracruz, Mexico. We conducted 2 years of point count censuses for summer resident birds, 2 years of Sherman live trapping for small mammals, and gathered vegetation structure data at 147 sampling points distributed over 16 sites spanning a cultivation intensification gradient. We calculated net annual revenue per hectare as an index of profitability from economic and management data collected during interviews with plantation owners/managers. Both the species richness and abundance of forest-affiliated birds were significantly greater in floristically and structurally diverse ‘bajo monte’ coffee and forest compared with commercial polyculture coffee, which was, in turn, significantly richer than statistically indistinguishable specialized shade and sun coffee. Mammal capture rates were extremely low at all but two sites. Forest bird species richness and abundance were explained by multiple linear regression models that included statistically significant effects of shade cover, percent of trees with epiphytes, and canopy height. We found no clear relationship between profitability and biodiversity, with biodiverse bajo monte coffee plantations ranking among the most profitable under all price scenarios. The high profitability of biodiverse bajo monte coffee systems was not dependent on the inclusion of long-term environmental costs or premium pricing systems. Our results demonstrate that high-biodiversity coffee cultivation can be compatible with high profitability, and has significant potential for conserving biodiversity in coffee-growing regions, but only as a substitute for low-biodiversity coffee cultivation, not forest.     

Abundance patterns and foraging activity of ant communities in abandoned,organic and commercial apple orchards in Northern California

The abundance patterns of ant communities were monitored with pitfall traps during 14 weeks in four northern California, dry farmed, apple orchards: an abandoned orchard undisturbed for 25 years, two ‘organically’ managed orchards, one with a cover crop of bell beans (Vicia faba) and grasses and the other kept clean of cover by discing, and a ‘commercial’ clean cultivated orchard sprayed with organophosphate insecticides. Six species of ants coexisted in the abandoned orchard, whereas only two species were found in the managed orchards. In both the organic and sprayed, clean cultivated systems, ants were more abundant in the orchard edges than in the vegetation-free centers. This trend was not apparent in the abandoned or organic cover orchards, where plant diversity in the center was similar to that of the edges. Ant predation on potato tuberworm larvae, Phthorimaea operculella, artificially placed on the orchard floor, declined with the intensity of management and vegetational simplication. A higher incidence of larval removal occurred in the edges than in the centers of the clean cultivated orchards. No noticeable populations of ants were detected on the trees in any of the orchards. Increased vegetational diversity and lack of disturbance appeared to affect ant locomotory activity and foraging efficiency by creating preferred sheltering and feeding sites.     

The influence of shade trees on coffee quality in small holder coffee agroforestry systems in Southern Colombia

Production of coffee, especially by small holders, is often associated with various forms of shade management. To analyse the effects of shade on physical coffee quality and on sensorial cup quality of Coffea arabica L. cv. Caturra KMC, a study was carried out with 94 plots on 16 farms in two municipalities, Timaná and Oporapa, located at elevations from 1272 to 1730 masl. in Huila, Colombia. The study was designed with emphasis on shade cover variation within each of the two study areas, while minimizing the variability of environment, agronomic management other than shade, and post-harvest processing. 46 samples of shade coffee and 46 samples of sun coffee were evaluated for physical and sensorial attributes using three professional coffee cuppers (assessors). A principal component analysis including all quality and environmental variables showed that sensory attributes were influenced negatively by shade, and that physical attributes were influenced positively by altitude. A mixed linear model, with coffee cupper and farm as random variables, revealed different shade effects on coffee quality in the two areas. In Oporapa, situated at high altitudes, shade had a negative effect on fragrance, acidity, body, sweetness and preference of the beverage, while no effect was found on the physical quality. In Timaná, situated at lower altitudes, shade did not have a significant effect on sensorial attributes, but significantly reduced the number of small beans. At high altitudes with low temperatures and no nutrient or water deficits, shade trees may thus have a partly adverse effect on C. arabica cv. Caturra resulting in reduced sensory quality. The occurrence of berry borer (Hypothenemus hampei) was lower at high altitudes and higher under shade. Future studies on shade and coffee quality should focus on the interaction between physical and chemical characteristics of beans.     

Nest site selection and induced response in a dominant arboreal ant species

It is well known that arboreal ants, both territorially dominant species and plant ants (e.g., species associated with myrmecophytes or plants housing them in hollow structures), protect their host trees from defoliators. Nevertheless, the presence of an induced defense, suggested by the fact that the workers discovering a leaf wound recruit nestmates, is only known for plant ants. Based on the results from a field study, we show here (1) that colonies of Azteca chartifex, a territorially dominant, neotropical arboreal ant species, mostly selected Goupia glabra (Goupiaceae) trees in which to build their principal carton nests and (2) that plant signals induced workers to recruit nestmates, which patrol the leaves, likely providing the plant with a biotic defense. Furthermore, the number of recruited workers was clearly higher on G. glabra, their most frequently selected host tree species, than on other tree species. These results show that contrary to what was previously believed, induced responses are also found in territorially dominant arboreal ants and so are not limited to the specific associations between myrmecophytes and plant ants.     

Pollinator diversity increases fruit production in Mexican coffee plantations: The importance of rustic management systems

Pollination is an ecological process that provides important services to humans. Pollination service in agroecosystems depends on several factors, including the land management systems used by farmers. Here we focused on the effects of insect pollinator diversity on coffee fruit production along a gradient of management systems in central Veracruz, Mexico. The gradient ranged from low environmental impact management systems (the native forest is not completely removed) to high environmental impact management systems (the native forest is completely removed). We hypothesized that pollinator diversity should be higher in low-impact systems. Then, if fruit production is positively related to pollinator diversity, plantations with low-impact management systems should display higher fruit production than plantations with high-impact management systems. We used observational and experimental data to test this hypothesis. Our results indicated that low-impact management systems have higher species richness and relative diversity (measured with the Shannon-Wiener diversity index) of pollinators than high-impact management systems. In all cases, fruit production was positively related with species richness and diversity of pollinators. Moreover, fruit production was higher in low-impact than in high-impact management systems. These results suggest that the diversity of insect pollinators can be influenced by the management system applied by farmers, and that such effects may have strong consequences on coffee fruit production.     

Agroforestry associating coffee and Inga densiflora results in complementarity for water uptake and decreases deep drainage in Costa Rica

The shade impact by Inga densiflora on water use and drainage in a coffee agroforestry system (AFS) was compared to coffee monoculture (MC) in Costa Rica. Rainfall interception, transpiration, runoff and soil water content were monitored during 3 years. Runoff was lower in AFS than MC (5.4 and 8.4% of total rainfall, respectively) and a higher water infiltration was observed under AFS. Still, the higher combined rainfall interception + transpiration of coffee and shade trees in AFS resulted in a lower drainage than in MC. No coffee water stress was recorded either in AFS or MC as relative extractable soil water remained above 20% during the dry seasons. Time course of soil water content showed enhanced access to soil water between 100 and 200 cm depth in AFS. This suggests complementarity for soil water between coffee and shade trees. The model HYDRUS 1D predicted that drainage at 200 cm depth accounted for a large fraction of annual rainfall (68% for MC and 62% for AFS). Climatic scenario simulations showed (1) a potential competition for water between coffee and shade trees when the dry season was extended by 4–6 weeks compared to actual, and (2) a severe reduction in annual drainage, but without competition for water when rainfall was reduced down to 40% of the actual.     

Biodiversity below ground: probing the subterranean ant fauna of Amazonia

Ants are abundant, diverse, and ecologically dominant in tropical forests. Subterranean ants in particular are thought to have a significant environmental impact, although difficulties associated with collecting ants underground and examining their ecology and behavior have limited research. In this paper, we present the results of a study of subterranean ant diversity in Amazonian Ecuador that employs a novel probe to facilitate the discovery of species inhabiting the soil horizon. Forty-seven species of ants in 19 genera, including new and apparently rare species, were collected in probes. Approximately 19% of the species collected at different depths in the soil were unique to probe samples. Analysis of similarity (ANOSIM) results showed that the species composition of ants collected with the probe was significantly different from samples collected using other techniques. Additionally, ANOSIM computations indicated the species assemblage of ants collected 12.5 cm below the surface was significantly different from those found at 25, 37.5, and 50 cm. Ant diversity and species accumulation rates decreased with increasing depth. There were no species unique to the lowest depths, suggesting that subterranean ants may not be distributed deep in the soil in Amazonia due to the high water table. The technique we describe could be used to gain new insights into the distribution and biology of subterranean ant species and other members of the species-rich soil invertebrate macrofauna.     

贵州连续性碳酸盐岩上覆景观特征的定量研究

利用GIS软件,探讨了贵州以连续性碳酸盐岩为基底地区的上覆景观单元、破碎化及斑块分形的特征及其形成原因。研究区域中,受岩性控制景现在整体上体现出一致性的基础上,又存在着明显的内部差异性。一致性表现为以灌木林地为优势景观,森林和草地中以次生景观为主,偏小的斑块占大多数,斑块大小分布全为正偏, 其分布曲线多为尖峭峰,斑块研究不存在面积上尺度域,斑块形状在人为强烈干扰下趋于规则而导致类型分维数的值偏小,人为干扰大的景观中斑块的破碎化更加明显。相比连续性白云岩地区,连续性石灰岩地区的水资源利用率低下,抗干扰能力弱,景观多样性不均衡,退化更严重,分割程度更破碎,空间异质性更强,稳定性差,易向逆向演替的方向发展。     

黄河源区斑块化退化高寒草甸土壤细菌群落多样性变化

为研究海拔变化和退化过程中高寒草甸土壤细菌群落多样性的变化规律,利用MiSeq高通量测序技术,分析不同海拔活动斑块、非活动斑块、恢复斑块和高寒草甸土壤细菌群落多样性,利用冗余分析对细菌多样性和环境因子进行分析.结果发现,3种类型斑块中主要的土壤细菌门均是变形菌门（Proteobacteria）、放线菌门（Actinobacteriota）和酸杆菌门（Acidobacteriota）.细菌优势属为RB 41 、鞘脂单胞菌属（Sphingomonas）和慢生根瘤菌属（Bradyrhizobium）.RB 41 和慢生根瘤菌属相对丰度随海拔升高而下降,随斑块演替而增加,但3种类型退化斑块相对丰度均显著低于高寒草甸（P<0.05）.退化斑块土壤碳固定功能的细菌丰度,大于健康高寒草甸.不同斑块的细菌Chao1指数和物种数显著高于高寒草甸（P<0.05）.冗余分析发现,生物结皮盖度和全氮是海拔4013 m处细菌优势门的主要影响因子;生物量、全氮和pH对高海拔4224 m细菌优势门影响较大.生物量和全钾显著影响海拔4013 m的细菌属分布,海拔4224 m地区莎草科盖度和速效氮为细菌优势属的主要影响因子.生物结皮和pH对细菌多样性影响较大.不同海拔地区细菌的影响因子发生着较大变化,在研究细菌多样性变化的过程中,不仅要关注高寒草地退化的影响,还应考虑海拔高度的作用.     

Towards a climate change adaptation strategy for coffee communities and ecosystems in the Sierra Madre de Chiapas, Mexico

The mountain chain of the Sierra Madre de Chiapas in southern Mexico is globally significant for its biodiversity and is one of the most important coffee production areas of Mexico. It provides water for several municipalities and its biosphere reserves are important tourist attractions. Much of the forest cover outside the core protected areas is in fact coffee grown under traditional forest shade. Unless this (agro)forest cover can be sustained, the biodiversity of the Sierra Madre and the environmental services it provides are at risk. We analyzed the threats to livelihoods and environment from climate change through crop suitability modeling based on downscaled climate scenarios for the period 2040 to 2069 (referred to as 2050s) and developed adaptation options through an expert workshop. Significant areas of forest and occasionally coffee are destroyed every year by wildfires, and this problem is bound to increase in a hotter and drier future climate. Widespread landslides and inundations, including on coffee farms, have recently been caused by hurricanes whose intensity is predicted to increase. A hotter climate with more irregular rainfall will be less favorable to the production of quality coffee and lower profitability may compel farmers to abandon shade coffee and expand other land uses of less biodiversity value, probably at the expense of forest. A comprehensive strategy to sustain the biodiversity, ecosystem services and livelihoods of the Sierra Madre in the face of climate change should include the promotion of biodiversity friendly coffee growing and processing practices including complex shade which can offer some hurricane protection and product diversification; payments for forest conservation and restoration from existing government programs complemented by private initiatives; diversification of income sources to mitigate risks associated with unstable environmental conditions and coffee markets; integrated fire management; development of markets that reward sustainable land use practices and forest conservation; crop insurance programs that are accessible to smallholders; and the strengthening of local capacity for adaptive resource management.     

Ant-lepidopteran associations along African forest edges

Working along forest edges, we aimed to determine how some caterpillars can co-exist with territorially dominant arboreal ants (TDAAs) in tropical Africa. We recorded caterpillars from 22 lepidopteran species living in the presence of five TDAA species. Among the defoliator and/or nectarivorous caterpillars that live on tree foliage, the Pyralidae and Nymphalidae use their silk to protect themselves from ant attacks. The Notodontidae and lycaenid Polyommatinae and Theclinae live in direct contact with ants; the Theclinae even reward ants with abundant secretions from their Newcomer gland. Lichen feeders (lycaenid; Poritiinae), protected by long bristles, also live among ants. Some lycaenid Miletinae caterpillars feed on ant-attended membracids, including in the shelters where the ants attend them; Lachnocnema caterpillars use their forelegs to obtain trophallaxis from their host ants. Caterpillars from other species live inside weaver ant nests. Those of the genus Euliphyra (Miletinae) feed on ant prey and brood and can obtain trophallaxis, while those from an Eberidae species only prey on host ant eggs. Eublemma albifascia (Erebidae) caterpillars use their thoracic legs to obtain trophallaxis and trophic eggs from ants. Through transfer bioassays of last instars, we noted that herbivorous caterpillars living in contact with ants were always accepted by alien conspecific ants; this is likely due to an intrinsic appeasing odor. Yet, caterpillars living in ant shelters or ant nests probably acquire cues from their host colonies because they were considered aliens and killed. We conclude that co-evolution with ants occurred similarly in the Heterocera and Rhopalocera.     

Aphid egg protection by ants: a novel aspect of the mutualism between the tree-feeding aphid Stomaphis hirukawai and its attendant ant Lasius productus

Aphids often form mutualistic associations with ants, in which the aphids provide the ants with honeydew and the ants defend the aphids from predators. In this paper, we report aphid egg protection by ants as a novel aspect of the deeply interdependent relationship between a tree-feeding aphid and its attendant ant. The ant Lasius productus harbours oviparous females, males, and eggs of the hinoki cypress-feeding aphid Stomaphis hirukawai in its nests in winter. We investigated the behaviour of ants kept with aphid eggs in petri dishes to examine whether the ants recognise the aphid eggs and tend them or only provide a refuge for the aphids. Workers carried almost all of the aphid eggs into the nest within 24 h. The ants indiscriminately tended aphid eggs collected from their own colonies and those from other ant colonies. The ants cleaned the eggs and piled them up in the nest, and egg tending by ants dramatically increased aphid egg survival rates. Starving the ants showed no significant effect on aphid egg survivorship. Without ants, aphid eggs were rapidly killed by fungi. These results suggested that grooming by the ants protected the aphid eggs, at least, against pathogenic fungi. This hygienic service afforded by the ants seems indispensable for egg survival of these aphids in an environment rich in potentially pathogenic microorganisms.Electronic supplementary material  Supplementary material is available for this article at and is accessible for authorized users.     

Forest clearing and sex ratio in forest-dwelling wood ant <Emphasis Type="Italic">Formica aquilonia</Emphasis>

Sex ratios of ants have been shown to vary with food resource levels in several studies, but it is not known whether forest clear-cutting has any effect on sex ratio of aphid-tending forest-dwelling ants. We investigated whether the offspring sex ratio of the forest dwelling ant Formica aquilonia varied as a response to clear-cutting. We found that the proportion of males was smaller in clear-cuts than in adjacent forests. Our results are among the first showing that anthropogenic changes in forest structures may have a potential to modify sex ratios of social insects and other forest-dwelling animals.     

Shade tree management affects fruit abortion, insect pests and pathogens of cacao

The mortality of cacao fruits caused by early fruit abortion or insect and pathogen attacks was investigated in differently managed agroforestry systems in Central Sulawesi, Indonesia. Nine agroforestry systems shaded by three different types of tree stands were selected, which represented a decrease in structural heterogeneity: forest remnants, diverse planted trees and one or two species of planted leguminose trees. After standardized manual cross-pollination, the development of 600 fruits on 54 trees (6 trees per agroforest) was followed during 18 weeks of fruit development. In total, 432 of all fruits were lost before maturity, which seriously undermined yields. The proportion of harvested fruits per tree (overall average: 27 ± 4%) was not affected by canopy type. Although shade cover did not have a significant effect, losses due to fruit abortion were most likely under forest shade, where nitrogen-fixing leguminose shade trees were absent. Fruit losses due to pathogenic infections and insect attacks increased with the homogenization of the agroforests, supporting the hypothesis that agricultural homogenization increases risks of pest outbreaks. In conclusion, shade management may be improved to increase yields from cacao using highly diversified natural shade agroforestry systems.     

Fractal properties of patch perimeters in a disturbed montane landscape, Beijing, China

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Non-specific association between filamentous bacteria and fungus-growing ants

Fungus-growing ants and their fungal cultivar form a highly evolved mutualism that is negatively affected by the specialized parasitic fungus Escovopsis. Filamentous Pseudonocardia bacteria occurring on the cuticle of attine ants have been proposed to form a mutualistic interaction with these ants in which they are vertically transmitted (i.e. from parent to offspring colonies). Given a strictly vertical transmission of Pseudonocardia, the evolutionary theory predicts a reduced genetic variability of symbionts among ant lineages. The aim of this study was to verify whether actinomycetes, which occur on Acromyrmex octospinosus leaf-cutting ants, meet this expectation by comparing their genotypic variability with restriction fragment length polymorphisms. Multiple actinomycete strains could be isolated from both individual ant workers and colonies (one to seven strains per colony). The colony specificity of actinomycete communities was high: Only 15% of all strains were isolated from more than one colony, and just 5% were present in both populations investigated. Partial sequencing of 16S ribosomal deoxyribonucleic acid of two of the isolated strains assigned both of them to the genus Streptomyces. Actinomycetes could also be isolated from workers of the two non-attine ant species Myrmica rugulosa and Lasius flavus. Sixty-two percent of the strains derived from attine ants and 80% of the strains isolated from non-attine ants inhibited the growth of Escovopsis. Our data suggest that the association between attine ants and their actinomycete symbionts is less specific then previously thought. Soil-dwelling actinomycetes may have been dynamically recruited from the environment (horizontal transmission), probably reflecting an adaptation to a diverse community of microbial pathogens.