Bioremediation of Soils by Plant–Microbe Systems

Abstract

Sustainable ecosystems can be designed to eliminate environmental toxins and reduce pathogen loads through the direct and indirect consequences of plant and microbial activities. We present an approach to the bioremediation of disturbed environments, focusing on petroleum hydrocarbon (PHC) contaminants. Treatment consists of incorporating a plant-based amendment to enhance ecosystem productivity and physiochemical degradation followed by the establishment of plants to serve as oxidizers and foundations for microbial communities. Promising amendments for widespread use are entire plants of the water fern Azolla and seed meal of Brassica napus (rapeseed). An inexpensive byproduct from the manufacture of biodiesel and lubricants, rapeseed meal is high in nitrogen (6% wt/wt), stimulates >100-fold increases in populations of resident Streptomyces species, and suppresses fungal infection of roots subsequently cultivated in the amended soil. Synergistic enzymatic and chemical activities of plant and microbial metabolism in root zones transform and degrade soil contaminants. Emphasis is given to mechanisms that enable PHC functionalization via reactive molecular species.     

Is colloid-facilitated phosphorus leaching triggered by phosphorus accumulation in sandy soils?

The leaching of colloidal phosphorus (P(coll)) contributes to P losses from agricultural soils. In an irrigation experiment with undisturbed soil columns, we investigated whether the accumulation of P in soils due to excess P additions enhances the leaching of colloids and P(coll) from sandy soils. Furthermore, we hypothesized that large concentrations of P(coll) occur at the onset of leaching events and that P(coll) mobilized from topsoils is retained in subsoils. Soil columns of different P saturation and depth (0-25 and 0-40 cm) were collected at a former disposal site for liquid manure and at the Thyrow fertilization experiment in northeastern Germany. Concentrations of total dissolved P, P(coll), Fe(coll), Al(coll), optical density, zeta potential, pH, and electrical conductivity of the leachates were determined. Colloidal P concentrations ranged from 0.46 to 10 micromol L(-1) and contributed between 1 and 37% to total P leaching. Large P(coll) concentrations leached from the P-rich soil of the manure disposal site were rather related to a large P-content of colloids than to the mobilization of additional colloids. Concentrations of colloids and P(coll) in leachates from P-poor and P-rich columns from Thyrow did not differ significantly. In contrast, accumulation of P in the Werbellin and the Thyrow soil consistently increased dissolved P concentrations to maximum values as high as 300 micromol L(-1). We observed no first-flush of colloids and P(coll) at the beginning of the leaching event. Concentrations of P(coll) leached from 40-cm soil columns were not smaller than those leached from 25-cm columns. Our results illustrate that an accumulation of P in sandy soils does not necessarily lead to an enhanced leaching of colloids and P(coll), because a multitude of factors independent from the P status of soils control the mobility of colloids. In contrast, P accumulation generally increases dissolved P concentrations in noncalcareous soils due to the saturation of the P sorption capacity. This indicates that leaching of dissolved P might be a more widespread environmental problem in areas with P-saturated sandy soils than leaching of P(coll).     

How accurate is the assessment of phosphorus pools in poultry litter by sequential extraction?

Amending poultry litter with Al sulfate (alum) has proven effective in reducing water-soluble P in the litter and in runoff from fields that have received litter applications. Although its effectiveness has been demonstrated on a macroscopic scale in the field or in the poultry houses, little is known about P speciation in either alum-amended or unamended litter. This knowledge is important for the evaluation of long-term stability and bioavailability of P, which is a necessary prerequisite for the assessment of the sustainability of intensive poultry operations. Here we report results from an investigation of alum-amended poultry litter (PL) that combined a chemical extraction sequence with solid-state 31P nuclear magnetic resonance (NMR) spectroscopic analysis of the residues. Aluminum is predominantly found in the fine size separate (<125 microm), indicating that the alum added to the poultry houses hydrolyzed without being completely dispersed in the litter. The NMR spectra confirmed the hypothesis that calcium phosphate phases are only dissolved during extraction with dilute acid and phosphate associated with Al is mainly dissolved during extraction with NaOH. Extraction of phosphate associated with Al was incomplete, however, as evidenced by 31P NMR spectroscopy. It could also be demonstrated that the extraction sequence overestimates the calcium phosphate fraction by an order of magnitude in this particular sample. Results from sequential chemical extraction should therefore be used with caution when assessing the magnitude of different phosphate pools in poultry litter.     

Response to “The Problem of the Question About Animal Ethics” by Michal Piekarski

In this brief article we reply to Michal Piekarski’s response to our article ‘Facing Animals’ published previously in this journal. In our article we criticized the properties approach to defining the moral standing of animals, and in its place proposed a relational and other-oriented concept that is based on a transcendental and phenomenological perspective, mainly inspired by Heidegger, Levinas, and Derrida. In this reply we question and problematize Piekarski’s interpretation of our essay and critically evaluate “the ethics of commitment” that he offers as an alternative.     

Partial neutralization of rain by seaspray: the case of Recôncavo, Bahia-Brazil

In the Recôncavo of Bahia (located between 12°33′ and 13°10′S and 38°00′and 39°00′W), there are significant discharges of SO₂ and NO_x due to local, industrial and urban activities. The incoming air masses from the Atlantic Ocean are enriched with seaspray, which neutralizes part of the rain acidity. The extent of seaspray neutralization of rain acidity was quantified in four sites of the region, each with different loads of seaspray. Rain samples were obtained daily at the same time, integrating the precipitation of the previous 24 h, using wet-only collectors and analyzed for pH by potentiometry and for sodium by flame photometry. The amount of rain acidity in Recôncavo neutralized by seaspray ranged from <1% up to 88% and depended on the site. On average, neutralization ranged from 5% to 18%.     

‘Learning by doing’: adaptive planning as a strategy to address uncertainty in planning

Adaptive management, an established method in natural resource and ecosystem management, has not been widely applied to landscape planning due to the lack of an operational method that addresses the role of uncertainty and standardized monitoring protocols and methods. A review of adaptive management literature and practices reveals several key concepts and principles for adaptive planning: (1) management actions are best understood and practiced as experiments; (2) several plans/experiments can be implemented simultaneously; (3) monitoring of management actions are key; and (4) adaptive management can be understood as ‘learning by doing’. The paper identifies various uncertainties in landscape planning as the major obstacles for the adoption of an adaptive approach. To address the uncertainty in landscape planning, an adaptive planning method is proposed where monitoring plays an integral role to reduce uncertainty. The proposed method is then applied to a conceptual test in water resource planning addressing abiotic-biotic-cultural resources. To operationalize adaptive planning, it is argued that professionals, stakeholders and researchers need to function in a genuinely transdisciplinary mode where all contribute to, and benefit from, decision making and the continuous generation of new knowledge.     

Successful de-fragmentation of woodland by planting in an agricultural landscape? An assessment based on landscape indicators

Habitat fragmentation is the focus of much conservation concern and associated research. In some countries, such as Britain, the main phase of fragmentation occurred centuries ago and the focus of conservation management is now on restoration and recovery. Scenario studies have suggested that spatial targeting is preferable if landscape scale restoration is to be achieved, and that this should bring greater benefits than site-focussed activities but this has rarely been tested in practice. In Britain, woodland expansion has been encouraged through a number of financial incentives, which have evolved from instruments that encouraged almost any addition to the potential woodland resource, to grant schemes that have set out to restore connectivity to remnant ancient woodland. This study assessed the degree of de-fragmentation achieved by woodland expansion on the Isle of Wight and in particular the success of spatial targeting of new woodland planting implemented through grant aid in the JIGSAW (Joining and Increasing Grant Scheme for Ancient Woodland) scheme. Five steps in the re-development of broad-leaved woodland were tested using eight indicators - six commonly used landscape metrics, and two ecologically scaled indicators derived from application of least-cost network evaluation. Only half of the measures indicated de-fragmentation over the whole sequence of five steps. However, the spatial targeting did appear successful, when compared to equivalent untargeted grant-aided woodland expansion, and resulted in positive change to six of the eight indicators. We discuss the utility of the indicators and ways in which future targeting could be supported by their application.     

Nitrate Dynamics in Two Streams Impacted by Wastewater Treatment Plant Discharge: Point Sources or Sinks?

We examined nitrate processing in headwater stream reaches downstream of two wastewater treatment plant outfalls during low streamflow. Our objectives were to quantify nitrate mass flux before and after effluent discharge and to use field and laboratory techniques to assess the mechanism of nitrate uptake. Microcosm experiments were utilized to determine the location of nitrate processing, and molecular biomarkers were used to detect and quantify microbial denitrification. At one site, downstream nitrate mass flux was significantly (p = 0.01) lower than sum of upstream and wastewater effluent fluxes, indicating rapid stream assimilation of incoming nitrate in the vicinity of the point source. Microcosm experiments supported the theory that nitrate processing occurs in sediments. Molecular assays for denitrifcation‐associated functional genes nosZ, nirS, and nirK, provided evidence that effluent contained enriched denitrifying communities relative to ambient stream water. Nitrate loss at the site with greater uptake was correlated with sulfate loss (p < 0.01; r² = 0.86), suggesting a possible link between sulfate reducing bacteria and denitrifying bacterial communities. Results suggest there is an opportunity to better understand nitrate dynamics in cases where point sources may act as point sinks under specific sets of conditions.     

Why Won’t They Come? Stakeholder Perspectives on Collaborative National Forest Planning by Participation Level

Collaboration has taken root in national forest planning, providing expanded opportunities for stakeholder participation in decision-making, but are these processes considered meaningful by key stakeholders? Do the processes result in increased participation by key stakeholders? We present results of a study of stakeholder perspectives of a collaborative planning process on the Grand Mesa, Uncompahgre, and Gunnison National Forests in Western Colorado, U.S.A. The stakeholders were stratified by participation levels in order to explore a possible relationship between participation and perceptions of the collaborative process. We used a Q-methodology approach to compare and contrast perspectives across participant levels in the North Fork Valley Landscape Working Group process. The results demonstrate four distinct perspectives on the collaborative process: 1) The collaborative process is valued by the Forest Service and will directly influence planning decisions; 2) The Forest Service, the collaborative process, and other stakeholders are not to be trusted; 3) The collaborative process is most effective when emphasizing place-specific dialogue that primarily involves stakeholders educating the Forest Service about issues; and 4) Forest planning involves issues requiring the application of scientific knowledge and expertise rather than collaboration. These perspectives were not strongly associated with participation levels, with time constraint being the primary mediating factor affecting participation. There are several possible actions policymakers and planners can take to enhance participation and overcome high rates of nonparticipation.     

Green energy generation by pressure retarded osmosis: State of the art and technical advancement—review

Pressure-retarded osmosis (PRO) is a method for converting salinity gradients to power by allowing water to flow through a semi-permeable membrane against an applied hydraulic pressure. PRO already has a long history, starting from the middle of the last century, and has rapidly improved in recent years. In this paper, we present a historical development of PRO since its inception: the development of this renewable energy process has gone through several stages, depending on technological developments, worldwide energy demands, and environmental concerns. The technological progress of the process is also studied, as well as its cost viability and environmental impact. Finally, some ideas to further develop the PRO process and mitigate its detrimental effects are discussed.     

What Influences Innovation Adoption by Water Managers? Climate Information Use in Brazil and the United States1

Abstract: This paper examines the use of climate forecasting in water management in Brazil and the United States (U.S.). Specifically, it seeks to understand how different institutional arrangements shape the willingness and ability of water managers to incorporate technoscience, especially seasonal climate forecasting (SCF), in their decision‐making process. It argues that among the many factors shaping the willingness of water managers to use SCF, institutional design and change is critical to explain different patterns in Brazil and the U.S. Moreover, factors related to individual flexibility, discretion, and accountability also affect the ability of managers to use climate information in water management. This paper finds that while water managers in the U.S operate in a mostly fragmented and risk‐averse system – which constrains the adoption of innovation – decision makers in Brazil can afford more flexibility to introduce new decision tools as a result of widespread water management reforms initiated in the 1990s.     

Shaped by race: why “race” still matters in the challenges facing biodiversity conservation in Africa

This article uses experiences from South Africa to argue that, despite progress made in making biodiversity conservation compatible with social, political and economic changes, progress could still be limited by reluctance of social actors to acknowledge and engage with the issue of race. The article argues that acknowledging the history of conservation in Africa, including close ties to racially charged colonialism, could be a positive impetus in the transformation of conservation to make it more socially, economically and politically justifiable.     

Erosion risk analysis by GIS in environmental impact assessments: a case study--Seyhan Köprü Dam construction

Environmental Impact Assessment (EIA) is a systematically constructed procedure whereby environmental impacts caused by proposed projects are examined. Geographical Information Systems (GIS) are crucially efficient tools for impact assessment and their use is likely to dramatically increase in the near future. GIS have been applied to a wide range of different impact assessment projects and dams among them have been taken as the case work in this article. EIA Regulation in force in Turkey requires the analysis of steering natural processes that can be adversely affected by the proposed project, particularly in the section of the analysis of the areas with higher landscape value. At this point, the true potential value of GIS lies in its ability to analyze spatial data with accuracy. This study is an attempt to analyze by GIS the areas with higher landscape value in the impact assessment of dam constructions in the case of Seyhan-K?prü Hydroelectric Dam project proposal. A method needs to be defined before the overlapping step by GIS to analyze the areas with higher landscape value. In the case of Seyhan-K?prü Hydroelectric Dam project proposal of the present work, considering the geological conditions and the steep slopes of the area and the type of the project, the most important natural process is erosion. Therefore, the areas of higher erosion risk were considered as the Areas with Higher Landscape Value from the conservation demands points of view.     

Elevated cadmium concentrations in potato tubers due to irrigation with river water contaminated by mining in Potosí, Bolivia

Risk of cadmium (Cd) in the human food chain in Cd-contaminated areas is often limited by phytotoxicity from zinc (Zn) that is associated with the Cd contamination. A semiarid area, 60 km downstream of a tin mine in Bolivia, was surveyed where irrigation with Cd-contaminated river water (65-240 microg Cd L(-1)) has increased median soil Cd to 20 mg kg(-1) while median soil Zn was only about 260 mg kg(-1). Cadmium concentrations in potato tubers increased from background values (0.05 mg kg(-1) dry wt.) in soils irrigated with spring water to a median value of 1.2 mg kg(-1) dry wt. in the affected area. Median concentration of Cd in soil solutions was 27 microg L(-1) and exceeded the corresponding value of Zn almost twofold. Soil-extractable chloride ranged from 40 to 1600 mg Cl(-) kg(-1) and was positively correlated with soil total Cd. Increasing soil solution Cl(-) decreased the solid-liquid distribution coefficient of Cd in soil. Soil total Cd explained 64% of the variation of tuber Cd concentration while only 3% of the variation was explained by soil extractable Cl(-) (n = 49). The estimated dietary Cd intake from potato consumption by the local population is about 100 microg d(-1) which exceeds the WHO recommended total daily intake. It is concluded that the food chain risk of Cd in the irrigation water of the semiarid area is aggravated by the association with Cl(-) and, potentially, by the relatively large Cd/Zn ratio.     

Natural attenuation of residual heavy metal contamination in soils affected by the Aznalcóllar mine spill, SW Spain

Non-amended soils affected by pyritic sludge residues were monitored for 7 years to assess the long-term natural attenuation ability of these soils. The decrease in both the total concentration of elements (particularly As) and (NH(4))(2)SO(4)-extractable fractions of Mn, and Zn, below the maximum permissible levels indicate a successful natural ability to attenuate soil pollution. Soil acidification by pyrite oxidation and rainfall-enhanced leaching were the largest contributors to the reduction of metals of high (Mn, Cu, Zn and Cd) and low (Fe, Al, and As) availability. Periodic use of correlation and spatial distribution analysis was useful in monitoring elemental dispersion and soil property/element relationships.     

Dissent and descent: tracing Canada’s environmental governance from regulatory beginnings to dismissal and reversals by the Harper government

Since Confederation in 1867, official Canadian settler government policy on the environment has sought to simultaneously preserve “wilderness” and exploit natural resources for market gain. In the 1960s, the nascent North American modern environmental movement pushed for stronger regulation on pollution and toxics – and a more institutionalised state-led response to environmental problems emerged. Throughout the last five decades, three principal “eras” of federal government reaction have emerged in response to mounting scientific evidence and public pressure to act on environmental issues. The first, from the late-1960s to mid-1980s, saw the development and implementation of early environmental policy and programmes. The second era, from the mid-1980s to mid-2000s co-occurred alongside the rise of the sustainable development paradigm, and is marked by the Canadian government’s attempt at leadership on the global stage. The third era, from the mid-2000s to 2015, demonstrates a shift from environmental regime-building and multilateral collaboration toward rollbacks and obstructionism. Under the leadership of Prime Minister Stephen Harper, the government of Canada reversed decades of progress and cooperation on the environment and sustainable development through its muzzling of government scientists, superficial co-optation of climate policy, rollbacks of environmental legislation and disparagement of environmental activists. In total, by shifting the federal government from a position of ineffective benevolence on environmental issues to one of contention and antagonism, the Harper government’s approach represents a departure from Canadian environmental governance norms and sought to remake the identity of Canada as an energy superpower inextricably tied to its oil and gas industry.     

Surrounded by Chemical Valley and ‘living in a bubble’: the case of the Aamjiwnaang First Nation,Ontario

This study examines the perceptions and coping strategies of the Aamjiwnaang First Nation, which is surrounded by ‘Chemical Valley’, the largest complex of petrochemical plants in Canada. Analysis of in-depth interviews showed that residents perceive ‘Mother Earth to be sick’; however, a strong level of community cohesion prevails, with ‘place’ as a significant anchor to the culture and history of the community. Residents articulated a collective sense of responsibility for the well-being of members both within and surrounding the community, whereby some residents would never leave, regardless of the toxic environment and concern for high rates of cancer and respiratory diseases among both adults and children. Residents employed action-focused coping strategies such as ‘indoor evacuation’ and the ‘Cop-sniff test’, and emotional coping strategies including blocking out the effects of ‘Chemical Valley’ by frequently ignoring warning sirens from industry. The results call on the need for a collaborative environmental planning intervention involving clear community participation. Findings suggest the need for an indoor recreational facility for both children and adults, and a graded warning system.     

How Useful are the Concepts of Familiarity, Biological Integrity, and Ecosystem Health for Evaluating Damages by GM Crops?

In the discussion about consequences of the release of genetically modified (GM) crops, the meaning of the term “environmental damage” is difficult to pin down. We discuss some established concepts and criteria for understanding and evaluating such damages. Focusing on the concepts of familiarity, biological integrity, and ecosystem health, we argue that, for the most part, these concepts are highly ambiguous. While environmental damage is mostly understood as significant adverse effects on conservation resources, these concepts may not relate directly to effects on tangible natural resources but rather to parameters of land use or ecological processes (e.g., the concept of biological integrity). We stress the importance of disclosing the normative assumptions underlying damage concepts and procedures for the evaluation of damages by GM crops. A conceptualization of environmental damage should precede its operationalization. We recommend an unambiguous definition for damage developed earlier and recommend that evaluation criteria be based on this. However, a general damage definition cannot replace case-specific operationalization of damage, which remains an important future challenge.     

The ‘green’ and ‘self’ in green self-governance – a study of 264 green space initiatives by citizens

Scholars observe an increased involvement of citizens in green space governance. This paper focuses on green self-governance, in which citizens play a major role in realizing, protecting and/or managing green space. While existing research on green self-governance focuses mostly on specific cases, we aim to contribute towards a large overview via an inventory of 264 green self-governance practices across The Netherlands. With this, we discuss the relevance of green self-governance for nature conservation and its relationship with authorities. In our analysis, we show that green self-governance practices are very diverse: they pursue a wide variety of physical and social objectives; employ a multitude of physical and political activities; involve different actors besides citizens; mobilize different internal and external funding sources; and are active within and outside of protected areas. While green self-governance can contribute towards protection and management of green space and towards social values, we highlight that this contribution is mostly of a local relevance. Most practices are small scale and objectives do not always match those of authorities. Although we speak of self-governance, authorities play an important role in many practices, for example, as financial donor, landowner or regulatory authority. In this, self-governance is often not completely ‘self’.

Abbreviations: PAA: Policy Arrangement Approach; NNN: National Nature Network; N2000: Natura 2000; NCOs: Nature Conservation Organizations; NGOs: Non-governmental organizations