Species Review of Amphibian Extinction Risks in Madagascar: Conclusions from the Global Amphibian Assessment

Abstract:  We assessed the extinction risks of Malagasy amphibians by evaluating their distribution, occurrence in protected areas, population trends, habitat quality, and prevalence in commercial trade. We estimated and mapped the distribution of each of the 220 described Malagasy species and applied, for the first time, the IUCN Red List categories and criteria to all species described at the time of the assessment. Nine species were categorized as critically endangered, 21 as endangered, and 25 as vulnerable. The most threatened species occur on the High Plateau and/or have been subjected to overcollection for the pet trade, but restricted extent of occurrence and ongoing habitat destruction were identified as the most important factors influencing extinction threats. The two areas with the majority of threatened species were the northern Tsaratanana-Marojejy-Masoala highlands and the southeastern Anosy Mountains. The current system of protected areas includes 82% of the threatened amphibian species. Of the critically endangered species, 6 did not occur in any protected area. For conservation of these species we recommend the creation of a reserve for the species of the Mantella aurantiaca group, the inclusion of two Scaphiophryne species in the Convention on the International Trade in Endangered Species Appendix II, and the suspension of commercial collecting for Mantella cowani . Field surveys during the last 15 years reveal no pervasive extinction of Malagasy amphibians resulting from disease or other agents, as has been reported in some other areas of the world.     

Extinction Debts and Risks Faced by Abundant Species

A recent model indicating that good competitiors and abundant species face the greatest risk of extinction from habitat destruction is critically examined. The conclusions drawn from the model are shown to rely on a number of assumptions regarding the mechanism of species coexistence, the relationship between abundance and competitive ability, and spatial characteristics of habitat destruction. The generality of these assumptions is questioned. Of particular concern are the assumptions that good competitors are poor dispersers, and that good competitors are the most abundant species. Furthermore, we suggest that the spatial scale of metapopulation dynamics in the model may not be appropriate for representing impacts of habitat destrustion. Empirical evidence is discussed indicating the limited applicability of the model for describing effects of habitat destruction on risks of species extinctions. Examples from a number of fragmented systems demonstrate that poor competitors and rare species are vulnerable to habitat destruction.     

Human Population Density and Prediction of Local Plant Extinction in Britain

Throughout the world, and particularly in densely populated countries like Britain, human activities exert a dominant influence on the abundance of both plants and animals. The commonness and rarity of plants in Britain has been plausibly linked to human land use. In Western Europe the identity of increasing and decreasing plants appears to depend on human population density, which is itself a crude measure of human impact on the landscape. The publication of new data on the changing distributions of scarce British plants allowed us to investigate the relationship between loss of scarce plants and human population density in Britain. Our results confirm that a direct effect of human population density on local plant extinctions can be detected at the regional scale in Britain. Although intensive agriculture is conventionally regarded as the greatest threat to British wildlife, our analysis suggests that urbanization may be at least as significant a danger.     

Correlations among Extinction Risks Assessed by Different Systems of Threatened Species Categorization

Abstract:  Many different systems are used to assess levels of threat faced by species. Prominent ones are those used by the World Conservation Union, NatureServe, and the Florida Game and Freshwater Fish Commission (now the Florida Fish and Wildlife Conservation Commission). These systems assign taxa a threat ranking by assessing their demographic and ecological characteristics. These threat rankings support the legislative protection of species and guide the placement of conservation programs in order of priority. It is not known, however, whether these assessment systems rank species in a similar order. To resolve this issue, we assessed 55 mainly vertebrate taxa with widely differing life histories under each of these systems and determined the rank correlations among them. Moderate, significant positive correlations were seen among the threat rankings provided by the three systems (correlations 0.58–0.69). Further, the threat rankings for taxa obtained using these systems were significantly correlated to their rankings based on predicted probability of extinction within 100 years as determined by population viability analysis (correlations 0.28–0.37). The different categorization systems, then, yield related but not identical threat rankings, and these rankings are associated with predicted extinction risk.     

Assessment of the Conservation Efforts to Prevent Extinction of the Iberian Lynx

Abstract: The Iberian lynx (Lynx pardinus) may be the first charismatic felid to become extinct in a high‐income country, despite decades of study and much data that show extinction is highly probable. The International Union for Conservation of Nature categorizes it as critically endangered; about 200 free‐ranging individuals remain in two populations in southern Spain. Conservation measures aimed at averting extirpation have been extensively undertaken with 4 of the former 10 Iberian lynx populations recorded 25 years ago. Two of the four populations have been extirpated. The number of individuals in the third population have declined by 83%, and in the fourth the probability of extirpation has increased from 34% to 95%. Major drivers of the pending extinction are the small areas to which conservation measures have been applied; lack of incorporation of evidence‐based conservation, scientific monitoring, and adaptive management into conservation efforts; a lack of continuity in recovery efforts, and distrust by conservation agencies of scientific information. In contrast to situations in which conservation and economic objectives conflict, in the case of the Iberian lynx all stakeholders desire the species to be conserved.     

Quantifying Relative Extinction Risks and Targeting Intervention for the Orchid Flora of a Natural Park in the European Prealps

Abstract:  Conservation currently relies largely on hindsight because demographic studies identify population decline after the event. Nevertheless, the degree of aggregation within a population is an "instantaneous" characteristic with the potential to identify populations presently at greatest risk of genetic impoverishment (via Allee effects and in-breeding depression) and local decline. We sought to determine the relative extinction risk for sympatric orchid species throughout Monte Barro natural park (Lecco, Italy), based on an index of dispersion ( I ) calculated from the size and location of subpopulations (recorded with GPS and mapped with GIS). Three population dispersion types were identified: (1) highly aggregated and locally abundant (large subpopulations restricted to particular sites; e.g., Gymnadenia conopsea [L.] R.Br.; I = 54.5); (2) widespread and moderately aggregated (opportunistic throughout the elevational range of the mountain; e.g., Listera ovata [L.] R.Br.; I = 18.9); and (3) weakly aggregated and locally rare (small, highly diffuse subpopulations; e.g., endemic Ophrys benacensis [Reisigl] O. & E. Danesch & Ehrend.; I = 4.4). Type 1 populations are more likely to respond to in situ intervention, whereas type 2 are relatively invasive species for which conservation intervention is not necessary, and type 3 are rare species that are least likely to respond to habitat management, for which ex situ conservation and population reinforcement would be most appropriate. Although our methodology provides only a "snapshot" of aboveground patterns of population dispersion, it can help target the application of in situ and ex situ conservation activities proactively and is of particular utility for parks for which a rapid assessment of local extinction risks is needed.     

The Interplay between Climate Variability and Density Dependence in the Population Viability of Chinook Salmon

Abstract:  The viability of populations is influenced by driving forces such as density dependence and climate variability, but most population viability analyses (PVAs) ignore these factors because of data limitations. Additionally, simplified PVAs produce limited measures of population viability such as annual population growth rate (λ) or extinction risk. Here we developed a "mechanistic" PVA of threatened Chinook salmon ( Oncorhynchus tshawytscha ) in which, based on 40 years of detailed data, we related freshwater recruitment of juveniles to density of spawners, and third-year survival in the ocean to monthly indices of broad-scale ocean and climate conditions. Including climate variability in the model produced important effects: estimated population viability was very sensitive to assumptions of future climate conditions and the autocorrelation contained in the climate signal increased mean population abundance while increasing probability of quasi extinction. Because of the presence of density dependence in the model, however, we could not distinguish among alternative climate scenarios through mean λ values, emphasizing the importance of considering multiple measures to elucidate population viability. Our sensitivity analyses demonstrated that the importance of particular parameters varied across models and depended on which viability measure was the response variable. The density-dependent parameter associated with freshwater recruitment was consistently the most important, regardless of viability measure, suggesting that increasing juvenile carrying capacity is important for recovery.     

利用生命周期评价方法评估高产粮田的面源污染潜在风险

将生命周期评价(LCA)方法引入农业系统,以山东桓台县为例,从农业系统外部投入的源头入手,对高投入高产出粮区粮食生产的潜在面源污染风险进行全面预测和评估。结果表明,在冬小麦-夏玉米轮作体系中,富营养化面源污染潜力(EP)最大,其次是水体毒性潜力(AEP),环境酸化潜力(AP)最弱。夏玉米的各类指标均高于冬小麦,且夏玉米的EP、AEP和冬小麦的EP值都超过了2000年世界人均环境影响潜值。冬小麦和夏玉米的IP指数(IP)分别是1.08和1.45,夏玉米的IP比冬小麦高34%。在冬小麦-夏玉米轮作体系中,夏玉米对面源污染的贡献高于冬小麦。氮肥的施用对AP和EP的贡献率分别达到99.75%和88.06%,农药的施用量决定了AEP的大小。根据农业面源污染综合防控技术示范区养分管理优化方案推荐的施肥量,测算可知优化后冬小麦和夏玉米的IP分别降低2.91%和18.35%,但夏玉米的IP仍然高于冬小麦。因此,控制氮肥和农药的施用量等源头减量措施是农业面源污染防控的关键。     

Effects of Human Population Density and Proximity to Markets on Coral Reef Fishes Vulnerable to Extinction by Fishing

Coral reef fisheries are crucial to the livelihoods of tens of millions of people; yet, widespread habitat degradation and unsustainable fishing are causing severe depletion of stocks of reef fish. Understanding how social and economic factors, such as human population density, access to external markets, and modernization interact with fishing and habitat degradation to affect fish stocks is vital to sustainable management of coral reef fisheries. We used fish survey data, national social and economic data, and path analyses to assess whether these factors explain variation in biomass of coral reef fishes among 25 sites in Solomon Islands. We categorized fishes into 3 groups on the basis of life‐history characteristics associated with vulnerability to extinction by fishing (high, medium, and low vulnerability). The biomass of fish with low vulnerability was positively related to habitat condition. The biomass of fishes with high vulnerability was negatively related to fishing conducted with efficient gear. Use of efficient gear, in turn, was strongly and positively related to both population density and market proximity. This result suggests local population pressure and external markets have additive negative effects on vulnerable reef fish. Biomass of the fish of medium vulnerability was not explained by fishing intensity or habitat condition, which suggests these species may be relatively resilient to both habitat degradation and fishing. Efectos de la Densidad de Poblaciones Humanas y la Proximidad del Mercado sobre Peces de Arrecifes de Coral Vulnerables a la Extinción     

Hybridization and the Extinction of Rare Plant Species

Much has been written about the role of interspecific competition, disease, herbivory, and the loss of key mutualisms in the extinction of rare plant species. Interspecific hybridization rarely is considered among the biotic interactions that promote extinction. We show how hybridization may contribute to the demise of rare plant species through demographic swamping and genetic assimilation by an abundant congener. We contend that the growth of the hybrid subpopulation is the key to rare species assimilation, and we show how the production of hybrid seed, the fitness of hybrids, and pest pressure affect hybrid proliferation. We also discuss how habitat disturbance, unspecialized pollinators, and weak crossing barriers promote hybridization, and how the negative consequences of hybridization are unlikely to be compensated for by immigration from conspecific populations. We also illustrate stages in the demise of species in island floras. We suggest that hybridization is an increasing threat to rare species because ecological barriers are being disrupted by human activities.     

Hunting and the Likelihood of Extinction of Amazonian Mammals

Species inhabiting tropical forests are thought to be on the verge of mass extinction. Much work has focused on extinction rates caused by deforestation; however, many of the recorded extinctions that have occurred since 1600 were a result of overhunting. We collected data on the relative abundance of large-bodied mammals in the northeastern Peruvian Amazon in areas with persistent hunting pressure and in areas with infrequent hunting pressure. We quantified the effects of hunting by calculating the change in abundance of species between the infrequently and persistently hunted sites. We report that in Amazonian mammals weighing more than 1 kg the degree of population declines caused by hunting is correlated with the species' intrinsic rate of natural increase (r_max  ), longevity, and generation time. Our results show that species with long-lived individuals, low rates of increase, and long generation times are more vulnerable to extinction than species with short-lived individuals, high rates of increase, and shorter generations.     

Attitudes toward Sustainability and Extinction

Abstract: Conservation biologists and natural resource managers are both working to maintain species, but their approaches and priorities differ. The contrast was highlighted when the World Conservation Union (IUCN) listed some commercial fish species, such as the Atlantic cod ( Gadus morhua ), in the 1996 Red List of Threatened Animals. These species qualified under IUCN's criteria because they had undergone a marked decline in abundance. Disagreements over these listings revealed fundamental differences between resource managers and conservation biologists. Resource managers aiming to maximize continuing yields using specific, explicit, and data-rich models, generally have not considered risk assessment and sometimes face the necessity for political compromises. Conservation biologists generally consider a wide diversity of species and operate in a data-poor and precautionary context with an overall aim of minimizing extinction risk. The IUCN Red List is an extreme case in point and uses simple criteria for evaluating the conservation status of all species. Under these circumstances, it can do little more than indicate a species' status in order to prompt further investigation by the appropriate body. We suggest that productive collaboration between conservation biologists and resource managers will start with an understanding of these different perspectives and will benefit from common interests in precautionary approaches, ecosystem approaches, and adaptive management studies.     

Predicting the Risk of Extinction through Hybridization

Abstract: Natural hybridization threatens a substantial number of plant and animal species with extinction, but extinction risk has been difficult to evaluate in the absence of a quantitative assessment of risk factors. We investigated a number of ecological parameters likely to affect extinction risk, through an individual-based model simulating the life cycle of two hybridizing annual plant species. All parameters tested, ranging from population size to variance in pollen-tube growth rates, affected extinction risk. The sensitivity of each parameter varied dramatically across parameter sets, but, overall, the competitive ability, initial frequency, and selfing rate of the native taxon had the strongest effect on extinction. In addition, prezygotic reproductive barriers had a stronger influence on extinction rates than did postzygotic barriers. A stable hybrid zone was possible only when habitat differentiation was included in the model. When there was no habitat differentiation, either one of the parental species or the hybrids eventually displaced the other two taxa. The simulations demonstrated that hybridization is perhaps the most rapidly acting genetic threat to endangered species, with extinction often taking place in less than five generations. The simulation model was also applied to naturally hybridizing species pairs for which considerable genetic and ecological information is available. The predictions from these "worked examples" are in close agreement with observed outcomes and further suggest that an endemic cordgrass species is threatened by hybridization. These simulations provide guidance concerning the kinds of data required to evaluate extinction risk and possible conservation strategies.     

Demographic Consequences of Terrestrial Habitat Loss for Pool‐Breeding Amphibians: Predicting Extinction Risks Associated with Inadequate Size of Buffer Zones

Abstract: Much of the biodiversity associated with isolated wetlands requires aquatic and terrestrial habitat to maintain viable populations. Current federal wetland regulations in the United States do not protect isolated wetlands or extend protection to surrounding terrestrial habitat. Consequently, some land managers, city planners, and policy makers at the state and local levels are making an effort to protect these wetland and neighboring upland habitats. Balancing human land‐use and habitat conservation is challenging, and well‐informed land‐use policy is hindered by a lack of knowledge of the specific risks of varying amounts of habitat loss. Using projections of wood frog (Rana sylvatica) and spotted salamander (Ambystoma maculatum) populations, we related the amount of high‐quality terrestrial habitat surrounding isolated wetlands to the decline and risk of extinction of local amphibian populations. These simulations showed that current state‐level wetland regulations protecting 30 m or less of surrounding terrestrial habitat are inadequate to support viable populations of pool‐breeding amphibians. We also found that species with different life‐history strategies responded differently to the loss and degradation of terrestrial habitat. The wood frog, with a short life span and high fecundity, was most sensitive to habitat loss and isolation, whereas the longer‐lived spotted salamander with lower fecundity was most sensitive to habitat degradation that lowered adult survival rates. Our model results demonstrate that a high probability of local amphibian population persistence requires sufficient terrestrial habitat, the maintenance of habitat quality, and connectivity among local populations. Our results emphasize the essential role of adequate terrestrial habitat to the maintenance of wetland biodiversity and ecosystem function and offer a means of quantifying the risks associated with terrestrial habitat loss and degradation.     

Variability in Population Abundance and the Classification of Extinction Risk

Abstract: Classifying species according to their risk of extinction is a common practice and underpins much conservation activity. The reliability of such classifications rests on the accuracy of threat categorizations, but very little is known about the magnitude and types of errors that might be expected. The process of risk classification involves combining information from many sources, and understanding the quality of each source is critical to evaluating the overall status of the species. One common criterion used to classify extinction risk is a decline in abundance. Because abundance is a direct measure of conservation status, counts of individuals are generally the preferred method of evaluating whether populations are declining. Using the thresholds from criterion A of the International Union for Conservation of Nature (IUCN) Red List (critically endangered, decline in abundance of >80% over 10 years or 3 generations; endangered, decline in abundance of 50–80%; vulnerable, decline in abundance of 30–50%; least concern or near threatened, decline in abundance of 0–30%), we assessed 3 methods used to detect declines solely from estimates of abundance: use of just 2 estimates of abundance; use of linear regression on a time series of abundance; and use of state‐space models on a time series of abundance. We generated simulation data from empirical estimates of the typical variability in abundance and assessed the 3 methods for classification errors. The estimates of the proportion of falsely detected declines for linear regression and the state‐space models were low (maximum 3–14%), but 33–75% of small declines (30–50% over 15 years) were not detected. Ignoring uncertainty in estimates of abundance (with just 2 estimates of abundance) allowed more power to detect small declines (95%), but there was a high percentage (50%) of false detections. For all 3 methods, the proportion of declines estimated to be >80% was higher than the true proportion. Use of abundance data to detect species at risk of extinction may either fail to detect initial declines in abundance or have a high error rate.     

Double Allee Effects and Extinction in the Island Fox

Abstract:  An Allee effect (AE) occurs in populations when individuals suffer a decrease in fitness at low densities. If a fitness component is reduced (component AE), per capita population growth rates may decline as a consequence (demographic AE) and extinction risk is increased. The island fox ( Urocyon littoralis ) is endemic to six of the eight California Channel Islands. Population crashes have coincided with an increase in predation by Golden Eagles ( Aquila chrysaetos ). We propose that AEs could render fox populations more sensitive and may be a likely explanation for their sharp decline. We analyzed demographic data collected between 1988 and 2000 to test whether fox density (1) influences survival and reproductive rates; (2) interacts with eagle presence and affects fox fitness parameters; and (3) influences per capita fox population trends. A double component AE simultaneously influenced survival (of adults and pups) and proportion of breeding adult females. The adult survival AE was driven by predation by eagles. These component AEs led to a demographic AE. Multiple-component AEs, a predation-driven AE, and the simultaneous occurrence of both component and demographic AEs in a mammal are all previously unreported processes. Populations below 7 foxes/km² could have suboptimal population growth rates due to the demographic AE, and AEs may have contributed to the dramatic declines in three fox populations. Because fox densities in critically endangered populations are well below this level, removing Golden Eagles appears necessary to prevent a predation-driven AE. Conservationists should also be aware of AEs when planning the release of captive foxes. More generally, our findings highlight the danger of overlooking AEs in the conservation of populations of rare or threatened species.     

The Pending Extinction of the Uncompahgre Fritillary Butterfly

Previous mark-recapture studies and population size estimates indicated that in the 1980s populations of the endangered Uncompahgre fritillary ( Boloria acrocnema ) declined precipitously, apparently leading to extirpation at its type locality. This locality and a nearby second site, both high in the San Juan Mountains of southwestern Colorado, constitute the total known range of B. acrocnema . A survey of 20 presumptive allozyme loci from one B. acrocnema population and seven populations of the closely related B. improba , sampled along the Rocky Mountain cordillera from the Yukon Territory, Canada, to the Wind River Range of Wyoming, revealed that B. acrocnema populations are less variable genetically than are B. improba populations in the northern part of that species' North American range. Genetic variability was also assayed at 18 presumptive allozyme loci in populations of Boloria titania, which were sampled from five of the same locations for comparison with the B. improba-B. acrocnema clade. Low estimates of heterozygosity indicate that genetic and demographic factors preceded by historic human disturbance are causing the decline of B. acrocnema . In addition, persistent drought conditions in southwestern Colorado throughout the 1980s probably contributed to the population declines. Conservation recommendations include strict enforcement of the ban against collecting pursuant to the Endangered Species Act, careful monitoring of known B. acrocnema sites, and possible translocations. Extreme measures beyond these will be costly and may be inappropriate for this relict species, which has an unknown capacity to persist in the face of local weather fluctuations and predicted regional warming trends.