Rapid Loss of Genetic Variation in Large Captive Populations of Drosophila Flies: Implications for the Genetic Management of Captive Populations

Levels of variation in eight large captive populations of D. melanogaster (census sizes ∼ 5000) that had been in captivity for periods from 6 months to 23 years (8 to 365 generations) were estimated from allozyme heterozygosities, lethal frequencies, and inversion heterozygosities and phenotypic variances, additive genetic variances ( V _A), and heritabilities ( h ²) for sternopleural bristle numbers. Correlations between all measures of variation except lethal frequencies were high and significant. All measures of genetic variation declined with time in captivity, with those for average heterozygosities, V _A, and h ² being significant. The effective population size ( N _e) was estimated to be 185–253 in these populations, only 0.037–0.051 of census size (N). Levels of allozyme heterozygosities declined rapidly in two large captive populations founded from another wild stock, being reduced by 86% and 62% within 2.5 years in spite of being maintained at sizes of approximately 1000 and 3500. Estimates of N _e/ N for these populations were only 0.016 and 0.004. Two estimates of N _e/ N for captive populations of D. pseudoobscura from data in the literature were also low at 0.036 and 0.012. Consequently, the rate of loss of genetic variation in captive populations and endangered species may be more rapid than hitherto recognized. Merely maintaining captive populations at large census sizes may not be sufficient to maintain essential genetic variation.     

Linking Inbreeding Effects in Captive Populations with Fitness in the Wild: Release of Replicated Drosophila melanogaster Lines under Different Temperatures

Abstract:  Inbreeding effects have been detected in captive populations of threatened species, but the extent to which these effects translate into fitness under field conditions is mostly unknown. We address this issue by comparing the performance of replicated noninbred and inbred Drosophila lines under field and laboratory conditions. We asked whether environment-dependent effects of inbreeding can be demonstrated for a field-fitness component in Drosophila , the ability of flies to locate resources, and associated the results with results on effects of inbreeding investigated in the laboratory. Inbreeding effects were evident when releases were undertaken under warm conditions, but not under cold conditions, which illustrates the environment-dependent nature of inbreeding depression. Inbreeding effects were much stronger in the field at warm temperatures than in laboratory stress tests, particularly for females. Effects of inbreeding based on performance in traditional inbreeding assays (viability, productivity) or from laboratory stress tests poorly predicted performance in the field. Inbreeding effects on resource location in the field can be strongly deleterious under some thermal conditions and involve traits not easily measured under laboratory conditions. More generally, inbreeding effects measured in captive populations may not necessarily predict their field performance, and programs to purge captive populations of deleterious alleles may not necessarily lead to fitness benefits in the wild.     

Conservation Genetics of the Black Rhinoceros (Diceros bicornis), I: Evidence from the Mitochondrial DNA of Three Populations

Abstract: A drastic decline in the number of black rhinoceroses ( Diceros bicornis ), primarily as a result of poaching places this species in imminent danger of extinction. The remaining black rhinos are divided into small, isolated populations that are vulnerable to demographic extinction, disease epidemics, genetic drift and inbreeding. Some conservationists have suggested minimizing these threats by moving as many animals as possible from different isolated populations to a few safe "rhino sanctuaries." To examine the possible long-term genetic consequences of such a strategy, we focused our efforts on determining the level of genetic differences among the remaining black rhino populations by examining restriction fragment length polymorphisms of the rapidly evolving mitochondrial DNA molecule. The 23 black rhinos in our survey, including animals from three geographic regions and two named subspecies, showed very little mitochondrial DNA differentiation. Only 4 out of 18 restriction enzymes revealed any mtDNA polymorphism, and the average estimated percent sequence divergence between the four mtDNA genotypes observed as 0.17%. Mitochondrial DNA divergence between the two named subspecies, D. b. minor and D. b. michaeli , was estimated to be only 0.29%. These results indicate a very close genetic relationship among the black rhinos in our survey. Thus, the mitochondrial DNA data suggest that within national boundaries, the black rhino populations we sampled may be considered single populations for breeding purposes, which might increase the species' probability of survival.     

Genetic Conservation in Feral Populations of Livestock

El ganado asilvestrado puede ser fuente de variación genética con un potencial valor comercial, cientifico, histórico o estético. Variaciones importantes pueden incluír caracteristicas primitivas ausentes en razas modemus y en adaptaciones nuevas o raras. La presencia de de estas variaciones puede ser señalada directamente por marcadores morfológicos, rasgos cuantitativos, caracteristicas adaptativas, o por alelos raros o únicos e, indirectamente por la amplitud y duración de aislamiento, tamaño de la población ancestral, linaje o condiciones ambientales Evidencias directas e indirectas indican características potencialmente valiosas en una población de ovejas asilvestradas en la Isla de Santa Cruz, California Recientemente, 18 ovejas fueron capturadas para iniciar una población en el continente. Discutimos varios objetivos genéticos que son importantes, para mantener unu población asilvestrada, pero advertimos que tales objetivos no deben ser conflictivos con la preservación de la diversidad natural amenazada por ganado asilvestrado.     

Evolutionary Consequences of Extinctions in Populations of a Hawaiian Honeycreeper

We report on the evolutionary change in bill size of a species of Hawaiian honeycreeper resulting from an apparent dietary shift caused by dramatic declines and extinctions of lobelioids, a historically favored nectar source. Although it now feeds mainly on the flowers of the ohia tree ( Metrosideros polymorpha ), early Hawaiian avifaunal accounts report that the i'iwi ( Vestiaria coccinea ), which has a long decurved bill, fed primarily on the flowers of Hawaiian Lobelioideae, which typically have long decurved corollas. A coevolutionary association of i'iwi bill and flower morphology has often been asserted. We test the hypothesis that the shift in the i'iwi's diet from the long corolla lobelioid flowers to ohia flowers, which lack corollas, resulted in directional selection for shorter bills. We evaluate this hypothesis by comparing the morphological characters of museum specimens from the island of Hawaii collected before 1902 with recent specimens from the Hakalau National Wildlife Refuge, Hawaii. We examine evidence of change in morphological characters using multivariate analysis and a nonparametric cubic spline technique. Results from all analyses are congruent: bill length is shorter in recent specimens.     

Using Modeling to Improve Monitoring of Structured Populations: Are We Collecting the Right Data?

Abstract:  Population monitoring is central to most demographic studies and conservation efforts, but it may not always be directed at the most appropriate life stage. We used stochastic simulation modeling to evaluate the effectiveness of a monitoring program for a well-studied population of Eastern Imperial Eagles ( Aquila heliaca ) in Kazakhstan. Specifically, we asked whether the most appropriate data were being collected to understand system state and population dynamics. Our models were parameterized with data collected over the course of 25 years of study of this population. We used the models to conduct simulation experiments to evaluate relationships between monitored or potentially monitored parameters and the demographic variables of interest—population size ( N ) and population growth (λ). Static analyses showed that traditional territory-based monitoring was a poor indicator of eagle population size and growth and that monitoring survivorship would provide more information about these parameters. Nevertheless, these same traditionally monitored territory-based parameters had greater power to detect long-term changes in population size than did survivorship or population structure. Regardless of the taxa considered, threats can have immediate impacts on population size and growth or longer-term impacts on population dynamics. Prudently designed monitoring programs for any species will detect the demographic effects of both types of threats.     

Conservation Genetics in the Management of Desert Fishes

Abstract: The status and security of fishes in North American deserts have steadily declined in this century due to man's activities in this naturally fragile region. We address genetic aspects of the population structure of desert fishes as applicable to conservation and recovery programs by developing two zoogeographic models of isolation and gene flow. In the Death Valley model populations are isolated, with no chance of natural gene flow among them. Genetic diversity within populations tends to be low, but genetic divergence among populations within a species is high. In the Stream Hierarchy model, a complicated hierarchical genetic structure exists and is a function of geographic proximity and connectivity of habitats. Within-habitat genetic diversity tends to be higher, and among-habitat differentiation lower, than in the Death Valley model. These two systems must be recognized as distinct and managed differently. We also suggest three areas of experimentation needed to better understand and manage genetic stocks of desert fishes: relationships between heterozygosity and fitness, experimental mixing of similar stocks to examine effects of increased heterozygosity, and analysis of the relative roles of genetic adaptation and phenotypic plasticity in local differentiation.     

Effect of Migration or Inbreeding Followed by Selection on Low-Founder-Number Populations: Implications for Captive Breeding Programs

Using the housefly, Musca domestica (L), as a model system, we tested the ability of two extremes in the range of possible captive breeding protocols to yield sustainable populations following founding with low founder numbers. The protocols tested included two levels of migration as well as inbreeding followed by selection, each with appropriate controls. Each low-founder-number population was founded with two pairs of flies. The maximum migration scheme had 50% migration per generation, and the minimum migration populations experienced a migration rate of 2.5% per generation. The control level of migration was 0%. A fourth low-founder-number treatment was designed to test the effect of inbreeding followed by selection. Two sets of high-founder-number control groups were also derived from the stock population. Two fitness measures, viability and productivity of the populations, were recorded at the fifth generation. Populations in the minimum-migration and zero migration treatment groups had lower fitness than populations in any other treatment for both measures. Populations that experienced inbreeding and selection for high fitness levels, high levels of migration, or large high-founder-number populations were equally fit. These results demonstrate that a captive-breeding scheme that contains substantial levels of migration or inbreeding followed by selection can yield highly adapted populations.     

Modeling Dynamics of Habitat-Interior Bird Populations in Fragmented Landscapes

Abstract: A stochastic computer model was used to examine the effects of varying degrees of habitat fragmentation on the dynamics of a hypothetical population of forest-interior bid. The primary demographic parameter that influenced the population's dynamics was fecundity, which varied as a function of how far a birds territory was from an ecological edge. As our model landscape became more fragmented the proportion of forest habitat that was near edges increased geometrically, and the population's overall fecundity dropped as a result. The model demonstrates that impaired reproduction in a fragmented landscape is, by itself a sufficient disruption of the population's dynamics to generate population declines and shifts in distribution similar to those observed in the fragmented forests of southern Wisconsin. Without immigration of recruits from other regions where reproduction is better, habitat-interior populations in a severely fragmented landscape can become locally extinct.     

Modeling Opportunity Costs of Conservation in Transitional Landscapes

Abstract:  Conservation scientists recognize the urgency of incorporating opportunity costs into conservation planning. Despite this, applications to date have been limited, perhaps partly because of the difficulty in determining costs in regions with limited data on land prices and ownership. We present methods for estimating opportunity costs of land preservation in landscapes or ecoregions that are a changing mix of agriculture and natural habitat. Our approach derives from the literature on estimating land values as opportunity costs of alternate land uses and takes advantage of general availability of necessary data, even in relatively data-poor regions. The methods integrate probabilities of habitat conversion with region-wide estimates of economic benefits from agricultural land uses and estimate land values with a discount rate to convert annual values into net present values. We applied our method in a landscape undergoing agricultural conversion in Paraguay. Our model of opportunity costs predicted an independent data set of land values and was consistent with implicit discount rates of 15–25%. Model-generated land values were strongly correlated with actual land values even after correcting for the effect of property size and proportion of property that was forested. We used the model to produce a map of opportunity costs and to estimate the costs of conserving forest within two proposed corridors in the landscape. This method can be applied to conservation planning in situations where natural habitat is currently being converted to market-oriented land uses. Incorporating not only biological attributes but also socioeconomic data can help in the design of efficient networks of protected areas that represent biodiversity at minimum costs.