Stokes drift through corals

Motivated by shallow ocean waves propagating over coral reefs, we investigate the drift velocities due to surface wave motion in an effectively inviscid fluid that overlies a saturated porous bed of finite depth. Previous work in this area either neglects the large-scale flow between layers (Phillips in Flow and reactions in permeable rocks, Cambridge University Press, Cambridge, 1991) or only considers the drift above the porous layer (Monismith in Ann Rev Fluid Mech 39:37–55, 2007). Overcoming these limitations, we propose a model where flow is described by a velocity potential above the porous layer and by Darcy’s law in the porous bed, with derived matching conditions at the interface between the two layers. Both a horizontal and a novel vertical drift effect arise from the damping of the porous bed, which requires the use of a complex wavenumber k. This is in contrast to the purely horizontal second-order drift first derived by Stokes (Trans Camb Philos Soc 8:441–455, 1847) when working with solely a pure fluid layer. Our work provides a physical model for coral reefs in shallow seas, where fluid drift both above and within the reef is vitally important for maintaining a healthy reef ecosystem (Koehl et al. In: Proceedings of the 8th International Coral Reef Symposium, vol 2, pp 1087–1092, 1997; Monismith in Ann Rev Fluid Mech 39:37–55, 2007). We compare our model with field measurements by Koehl and Hadfield (J Mar Syst 49:75–88, 2004) and also explain the vertical drift effects as documented by Koehl et al. (Mar Ecol Prog Ser 335:1–18, 2007), who measured the exchange between a coral reef layer and the (relatively shallow) sea above.

     

A flume study of drift in marine infaunal amphipods (Haustoriidae)

Amphipods of the infaunal family Haustoriidae are characteristic of high-energy marine sands and occur both in the sediment and the overlying water column. Sediments in this habitat are subject to constant reworking by tidal currents, suggesting that resident amphipod populations are affected by this disturbance in a phenomenon similar to freshwater invertebrate drift. A controlled-velocity laboratory flume was used to examine the effect of haustoriid density, current velocity, illumination, and food availability on drift rates to determine a causal basis for drift. Drift is densityindependent and greatest at night and during high current flow; it is also greater at night from sterile sediment than from untreated sand. Flume transport was usually less than 10% of amphipods present in the sediment. Haustoriids captured downstream were mostly adults occurring in a 1:1 sex ratio, suggesting no obvious function of drift in reproduction. Current-induced displacement of haustoriids may produce the patchiness in distribution observed in nature. Disturbance of the bed could also function to keep amphipod densities below the carrying capacity of the local environment. In certain cases, food limitation may cause amphipods to actively leave the substrate. Under all conditions, greater drift rates in darkness are probably adaptive in avoidance of predators. Despite the nature of sediment movement in a high-energy environment, haustoriid drift may have an active as well as passive component.     

Negative effects of stress-resistant drift algae and high temperature on a small ephemeral seagrass species

Seagrasses are threatened by multiple anthropogenic stressors, such as accumulating drift algae and increasing temperatures (associated with eutrophication and global warming, respectively). However, few seagrass experiments have examined whether exposure to multiple stressors causes antagonistic, additive, or synergistic effects, and this has limited our ability to predict the future health status of seagrass beds. We conducted a laboratory experiment to test whether abundance of Gracilaria comosa (3 levels; 0, 1.2, and 3.4 kg WW m⁻²), an algae that is resistant to wide environmental fluctuations (e.g. light, temperature, salinity, and oxygen levels), has negative effects on the small ephemeral seagrass, Halophila ovalis and whether the effects are exacerbated by high temperature (3 levels; 20, 25, and 30°C). We found an additive negative effect of the two stressors when tested simultaneously on 14 seagrass performance measures, with most data variability explained by the drift algae. For the individual plant performance measures (above- and below-ground growth and mortality, leaf area, internode distance, and root length and root volume), we found 5 additive effects, 4 synergistic effects, and 5 effects that were significant only for drift algae. We also documented a significant additive effect of drift algae and temperature on dissolved porewater sulphide (DS). A follow-up correlation analysis between DS and the 14 plant performance measures revealed significant or near-significant linear correlations on 9 of these responses (above- and below-ground growth, leaf area and weight, leaf mortality, and internode distance). In summary, we showed (a) that a stress-resistant drift algae can have strong negative effects on a small ephemeral seagrass, (b) this negative effect can increase both additively and synergistically with increasing temperature depending on performance measure, and (c) the negative effects may be mediated by a build-up of porewater DS. An implication of our findings is that resource managers aiming to preserve healthy seagrass beds in an almost certain future warmer world should increase efforts to keep drift algae populations low.     

Diffusion about the mean drift location in a biased random walk

Random walks are used to model movement in a wide variety of contexts: from the movement of cells undergoing chemotaxis to the migration of animals. In a two-dimensional biased random walk, the diffusion about the mean drift position is entirely dependent on the moments of the angular distribution used to determine the movement direction at each step. Here we consider biased random walks using several different angular distributions and derive expressions for the diffusion coefficients in each direction based on either a fixed or variable movement speed, and we use these to generate a probability density function for the long-time spatial distribution. We demonstrate how diffusion is typically anisotropic around the mean drift position and illustrate these theoretical results using computer simulations. We relate these results to earlier studies of swimming microorganisms and explain how the results can be generalized to other types of animal movement.     

Atlantic storminess and historical sand drift in Western Europe: implications for future management of coastal dunes

Historical records of sand drift and dune-building along the coastline of Western Europe provide insights into the natural processes of sand dune accretion and both the impacts of, and human responses to, sand incursions. The analysis of documentary records, instrumental data and proxy records over the last 1,000 years indicates that this period, which included the Little Ice Age (AD 1570–1900), featured numerous episodes of sand drift and dune development driven by strong winds associated with Atlantic storms. It is estimated that sand drift affected over a quarter of a million hectares of coastal land in Western Europe. The widespread use of vegetation to stabilise coastal dune systems and prevent sand drift is documented across Europe from AD 1100 and by the start of the 20th century all of the larger coastal dune systems in Portugal, France, Britain and Denmark were comparatively inactive. Given that Atlantic storminess has remained more or less unchanged over the last 200 years, modern dune management strategies which consider dune devegetation, driven by an increasing focus on ‘naturalness’, may give rise to a recurrence of sand drift problems. Predictions of increased storm frequencies by the end of the 21st century, coupled with sea level rise and potential changes in sand supply will present further challenges for the more ‘dynamic’ dune management strategies.     

A revised calculation of the econometric factors α- and β for the Extended Exergy Accounting method

Extended Exergy Accounting (“EEA”) is a method to compute the space- and time integral of the primary exergy required to produce a good or a service: the extended exergy of a commodity measures its “embodied exergy”, including externalities (Labour, Capital and Environmental Costa). A crucial point of the method is the calculation of two econometric coefficients, commonly referred to as “α” and “β”,used to calculate the extended exergy equivalents of Labour and Capital respectively. In previous applications of the EEA method, these coefficients have been assigned approximate values estimated on the basis of global system considerations. In this paper, a novel procedure is described that leads to the calculation of “exact” values of both econometric coefficients, based on detailed exergy- and monetary balances of the Society to which the EEA is applied. It is shown that both α and β depend in a non-trivial way from the consumption patterns, the technological level and the life- and socio-economic standards of each Country. It is also shown that the values are substantially different for developed (OECD) and underdeveloped Countries, and representative samples of values are calculated and critically analysed. On the basis of these new model coefficients, the specific exergy equivalents of Labour (ee_L) and of Capital (ee_K) are calculated, and shown to differ from the values used in previous EEA calculations.     

On metapopulation resistance to drift and extinction

The spatial configuration of metapopulations (numbers, sizes, and localization of patches) affects their ability to resist demographic extinction and genetic drift, but sometimes with opposite effects. Small and isolated patches, for instance, contribute marginally to demography but may play a large role in genetics by maintaining a sizeable amount of genetic variance among demes. In source-sink systems, similarly, connectivity may be beneficial in terms of effective size, but detrimental in terms of survival, by lowering the reproductive value of source populations. How to reconcile these opposite effects? Here we propose an analytical framework that integrates fixation time (ability to resist genetic drift) and extinction time (ability to resist demographic extinction) into a single index of resistance, measuring the ability of a metapopulation to maintain its demo-genetic integrity. We then illustrate with numerical examples how conflicting demands may be resolved.     

Correlation analysis as a tool to investigate the bioaccessibility of nickel, vanadium and zinc in Northern Ireland soils

Correlation analyses were conducted on nickel (Ni), vanadium (V) and zinc (Zn) oral bioaccessible fractions (BAFs) and selected geochemistry parameters to identify specific controls exerted over trace element bioaccessibility. BAFs were determined by previous research using the unified BARGE method. Total trace element concentrations and soil geochemical parameters were analysed as part of the Geological Survey of Northern Ireland Tellus Project. Correlation analysis included Ni, V and Zn BAFs against their total concentrations, pH, estimated soil organic carbon (SOC) and a further eight element oxides. BAF data were divided into three separate generic bedrock classifications of basalt, lithic arenite and mudstone prior to analysis, resulting in an increase in average correlation coefficients between BAFs and geochemical parameters. Sulphur trioxide and SOC, spatially correlated with upland peat soils, exhibited significant positive correlations with all BAFs in gastric and gastro-intestinal digestion phases, with such effects being strongest in the lithic arenite bedrock group. Significant negative relationships with bioaccessible Ni, V and Zn and their associated total concentrations were observed for the basalt group. Major element oxides were associated with reduced oral trace element bioaccessibility, with Al₂O₃ resulting in the highest number of significant negative correlations followed by Fe₂O₃. spatial mapping showed that metal oxides were present at reduced levels in peat soils. The findings illustrate how specific geology and soil geochemistry exert controls over trace element bioaccessibility, with soil chemical factors having a stronger influence on BAF results than relative geogenic abundance. In general, higher Ni, V and Zn bioaccessibility is expected in peat soil types.     

Sorption,cellular distribution,and cytotoxicity of imidazolium ionic liquids in mammalian cells – influence of lipophilicity

In order to assist an integrated development of ionic liquids (ILs), a study on the sorption, distribution, and cytotoxicity of a series of 1-alkyl-3-methyl imidazolium tetrafluoroborates with C6 rat glioma cells has been performed. Cellular sorption and distribution among three cellular fractions (cytosol, nuclei, and membranes) were analysed by reversed-phase HPLC (RP-HPLC). Compounds with longer 1-alkyl substituents were sorbed with higher enrichment factors and sorption coefficients per protein than those with shorter 1-alkyl chains. The 1-octyl-3-methyl imidazolium cation (C₈MIM) was enriched 17-folds whereas C₆MIM and C₄MIM were enriched by factors of 3.5 and 2.3, respectively. After fractionation of cells by centrifugation, about 8% of C₈MIM was found in the nuclear fractions. The cytotoxicity as estimated by the tetrazolium reductase assay was increasing with the lengths of the 1-alkyl chains from C₄MIM to C₁₀MIM. Consistently, cell proliferation rates were decreasing with increasing lengths of the 1-alkyl chains. The results reveal the correlations between lipophilicity, cellular sorption, and cytotoxicity.     

Verteilungskoeffizienten chlorierter Kohlenwasserstoffe zwischen Muskulatur und Leber bei Fischen

Measured partition coefficients (KL_M/L) related to lipid-concentrations between the muscle (C_ML) and liver (C_LL) tissue of two fish species (Abramis brama, Zoarces viviparus) exhibit nominal values of unity according the relationship KL_M/L=C_ML/C_LL=1 for persistent compounds such as highly chlorinated PCB and values above one for degradable compounds for example chlorinated cyclohexanes or DDT. The corresponding theory is presented. The relationship holds for samples for single fish as well as for pooled samples.     

Mechanisms of moisture stress in a mid-latitude temperate forest: Implications for feedforward and feedback controls from an irrigation experiment

While it is well established that stomata close during moisture stress, strong correlations among environmental (e.g., vapor pressure deficit, soil moisture, air temperature, radiation) and internal (e.g., leaf water potential, sap flow, root-shoot signaling) variables obscure the identification of causal mechanisms from field experiments. Models of stomatal control fitted to field data therefore suffer from ambiguous parameter identification, with multiple acceptable (i.e., nearly optimal) model structures emphasizing different moisture status indicators and different processes. In an effort to minimize these correlations and improve parameter and process identification, we conducted an irrigation experiment on red maples (Acer rubrum L.) at Harvard Forest (summers of 2005 and 2006). Control and irrigated trees experienced similar radiative and boundary layer forcings, but different soil moisture status, and thus presumably different diurnal cycles of internal leaf water potential. Measured soil moisture and atmospheric forcing were used to drive a transient tree hydraulic model that incorporated a Jarvis-type leaf conductance in a Penman–Monteith framework with a Cowan-type (resistance and capacitance) tree hydraulic representation. The leaf conductance model included dependence on both leaf matric potential, Ψ_L (so-called feedback control) and on vapor pressure deficit, D (so-called feedforward control). Model parameters were estimated by minimizing the error between predicted and measured sap flow. The whole-tree irrigation treatment had the effect of elevating measured transpiration during summer dry-downs, demonstrating the limiting effect that subsurface resistance may have on transpiration during these times of moisture stress. From the best fitted model, we infer that during dry downs, moisture stress manifests itself in an increase of soil resistance with a resulting decrease in Ψ_L, leading to both feedforward and feedback controls in the control trees, but only feedforward control for the irrigated set. Increases in the sum-of-squares error when individual model components were disabled allow us to reject the following three null hypotheses: (1) the f(D) stress is statistically insignificant (p = 0.01); (2) the f(Ψ_L) stress is statistically insignificant (p = 0.07); and (3) plant storage capacitance is independent of moisture status (p = 0.07).     

Cloud point extraction of trace cyanide from environmental waters for indirect flame atomic absorption spectrometric determination

A method has been developed for indirect determination of cyanide in environmental waters based on cloud point extraction (CPE), preconcentration and determination by flame atomic absorption spectrometry (FAAS). The method was based on reduction of Cu(II) to Cu(I) in the presence of cyanide and complexation of the produced Cu(I)(CN)₂^? with gallocyanin (GC⁺) as an ion-pairing reagent at pH 4.0, followed by its extraction into polyethyleneglycol mono-p-nonylphenylether (Ponpe 7.5). Selectivity was improved with the use of suitable masking agents. Various factors influencing separation and preconcentration of cyanide have been investigated, and conditions were optimized, allowing determination of cyanide in the range of up to 1.2 mg L^?1 with a detection limit of 0.00045 mg L^?1. The method has been applied to the determination of cyanide in environmental waters, the results being in agreement with those obtained by a reference method.     

Critical threshold size for overwintering sandeels (<Emphasis Type="Italic">Ammodytes marinus</Emphasis>)

Several ecologically and commercially important fish species spend the winter in a state of minimum feeding activity and at lower risk of predation. To enable this overwintering behaviour, energetic reserves are generated prior to winter to support winter metabolism. Maintenance metabolism in fish scales with body size and increases with temperature, and the two factors together determine a critical threshold size for passive overwintering below which the organism is unlikely to survive without feeding. This is because the energetic cost of metabolism exceeds maximum energy reserves. In the present study, we estimated the energetic cost of overwintering from a bioenergetic model. The model was parameterised using respirometry-based measurements of standard metabolic rate in buried A. tobianus (a close relative to A. marinus) at temperatures from 5.3 to 18.3°C and validated with two independent long-term overwintering experiments. Maximum attainable energy reserves were estimated from published data on A. marinus in the North Sea. The critical threshold size in terms of length (L _th) for A. marinus in the North Sea was estimated to be 9.5 cm. We then investigated two general predictions: (1) Fish smaller than L _th display winter feeding activity, and (2) size at maturation of iteroparous species is larger than L _th to ensure sufficient energy reserves to accommodate both the metabolic cost of passive overwintering and reproductive investments. Both predictions were found to be consistent with data on size at maturation and total body energy in December and February.     

Acute toxicity of roundup to the nontarget organism Hyalella curvispina. Laboratory and field study

Glyphosate is the most used pesticide in Argentina. Hyalella curvispina is a widely distributed and commonly abundant component of the invertebrate assemblages in shallow waters of southern South America. The aim of this study was to assess the acute toxicity of the increasingly common Roundup Full II®, commercial formulation of the herbicide glyphosate (66.2% active ingredient), to H. curvispina in laboratory and field assessments. The mean estimated 48-h LC₅₀ of Roundup was 9.9 ± 1.7 mg L^?1. In a field experiment Roundup was applied to soybean plots. Simulated rain was generated the following day by means of irrigation sprinkler equipment. H. curvispina was exposed to runoff water and soy leaves. No mortality was observed. It is suggested that Roundup crop applications represent a low risk of acute toxicity to H. curvispina adults inhabiting water bodies adjacent to crop fields.     

REP-LECOTOX: an example of FP 6 INCO project to strengthen ecotoxicological research in WBC (Western Balkan countries)

Background

In order to map exceedances of critical atmospheric deposition loads for nitrogen (N) surface data on the atmospheric deposition of N compounds to terrestrial ecosystems are needed. Across Europe such information is provided by the international European Monitoring and Evaluation Programme (EMEP) in a resolution of 50 km by 50 km, relying on both emission data and measurement data on atmospheric depositions. The objective of the article at hand is on the improvement of the spatial resolution of the EMEP maps by combining them with data on the N concentration in mosses provided by the International Cooperative Programme on Effects of Air Pollution on Natural Vegetation and Crops (ICP Vegetation) of the United Nations Economic Commission for Europe (UNECE) Long-range Transboundary Air Pollution (LTRAP) Convention.

Methods

The map on atmospheric depositions of total N as modelled by EMEP was intersected with geostatistical surface estimations on the N concentration in mosses at a resolution of 5 km by 5 km. The medians of the N estimations in mosses were then calculated for each 50 km by 50 km grid cell. Both medians of moss estimations and corresponding modelled deposition values were ln-transformed and their relationship investigated and modelled by linear regression analysis. The regression equations were applied on the moss kriging estimates of the N concentration in mosses. The respective residuals were projected onto the centres of the EMEP grid cells and were mapped using variogram analysis and kriging procedures. Finally, the residual and the regression map were summed up to the map of total N deposition in terrestrial ecosystems throughout Europe.

Results and discussion

The regression analysis of the estimated N concentrations in mosses and the modelled EMEP depositions resulted in clear linear regression patterns with coefficients of determination of r ² = 0.62 and Pearson correlations of r _p = 0.79 and Spearman correlations of r _s = 0.70, respectively. Regarding the German territory a nationwide mean of 18.1 kg/ha/a (standard deviation: 3.49 kg/ha/a) could be derived from the resulting map on total N deposition in a resolution of 5 km by 5 km. Recent updates of the modelled atmospheric deposition of N provided a similar estimate for Germany.

Conclusions

The linking of modelled EMEP data on the atmospheric depositions of total N and the accumulation of N in mosses allows to map the deposition of total N in a high resolution of 5 km by 5 km using empirical moss data. The mapping relies on the strong statistical relationship between both processes that are physically and chemically related to each other. The mapping approach thereby relies on available data that are both based on European wide harmonized methodologies. From an ecotoxicological point of view the linking of data on N depositions and those on N bioaccumulation can be considered a substantial progress.     

A fast and reliable method for quantitative determination of total mercury in vegetables

A cloud-point extraction (CPE) process using the nonionic surfactant, polyethylene glycol tert octylphenyl ether (Triton X-114) was employed for determination of Hg(II) ions in aqueous solutions. The method is based on the ion-pairing reaction of Hg(II) with Pyronin B (PyrB⁺) in the presence of excess iodide at pH 6.0 and extraction of the complex formed. The chemical variables affecting CPE efficiency were studied, and the analytical characteristics of the method were obtained. The calibration curves were linear in the range of 1–40 μg L^?1 with the detection limits of 0.35 and 0.30 μg L^?1 at 556 and 521 nm. Selectivity was also tested. The coefficients of variation of the method are 2.4% and 5.2% for five replicate measurements of mercury at levels of 10 and 25 μg L^?1, respectively. The results obtained for two certified reference samples were in a good agreement with the certified values. The method was applied to the determination of total mercury in vegetable samples.     

Automated indirect fluoride determination by ICP-OES using discontinuous-flow analysis

An automated method for the indirect determination of fluoride by inductively coupled plasma atomic emission spectrometry using discontinuous-flow analysis has been developed. A modified flow injection analysis system was used for sample preparation. The method is based on the determination of excess cerium(III) ion after precipitation of CeF₃. Separation of the precipitate is performed online on a syringe membrane filter that is cleaned each analysis cycle by 1 M nitric acid, ensuring a long life-time for the filter. As a result of the short reaction time, a detection limit of 9.5 mg L^?1 was obtained. The precision (RSD) of the proposed method is 1.02% at fluoride concentration of 28 mg L^?1. The applicability of the technique for groundwater monitoring of fluoride-contaminated area is demonstrated.     

Adaptive responses to local mate competition by the parasitoid,Telenomus remus

Summary The parasitic wasp, Telenomus remus, lays her eggs in diserete patches of moth eggs, where her offspring develop and mate before dispersal, satisfying conditions for local mate competition (LMC). In the presence of other ovipositing females, wasps lay a higher sex ratio (proportion males), as predicted by LMC theory, and achieve this by a combination of two mechanisms, (1) avoidance of superparasitism and a sequence of sex allocation initially biased towards males and (2) a direct increase in sex ratio in the presence of other wasps, sex ratio increases with the proportion of previously parasitized hosts, as predicted by LMC theory. In both cases, chemical traces left by foraging wasps are indicated as the stimuli causing wasps to increase the proportion of males allocated to hosts.     

Rapid and sensitive headspace gas chromatographic method for cyanide determination in whole blood

We reported a simple and rapid headspace (HS) gas chromatographic (GC) assay for the determination of cyanide in human whole blood obtained from both cadaveric and intoxicated subjects. The poison was extracted from whole blood samples by HS technique after 10 min incubation at 80°C with a HCl (1N) acidic solution supplemented with 30 g L^?1 of sodium chloride and 10 mg L^?1 of isopropanol as internal standard. A SGE WAX capillary column (30 m × 0.32 mm ID × 0.5 µm df) was used. The Flame Ionization Detector (FID) was set at 250°C. The detection and the quantification limits were 0.02 and 0.2 mg L^?1, respectively. In the within-day study, the coefficients of variation for three different whole blood cyanide concentrations varied between 3.2 and 6.5%, whereas those in the day-to-day study varied between 4.8 and 6.3%. The assay was performed in less than 20 min per sample, which appears to be suitable for emergency toxicological tasks involved in diagnosis of cyanide poisoning.