Numerical modeling of aquaculture dissolved waste transport in a coastal embayment

Marine aquaculture is expanding rapidly without reliable quantification of effluents. The present study focuses on understanding the transport of dissolved wastes from aquaculture pens in near-coastal environments using the hydrodynamics code SUNTANS (Stanford Unstructured Nonhydrostatic Terrain-following Adaptive Navier–Stokes Simulator), which employs unstructured grids to compute flows in the coastal ocean at very high resolution. Simulations of a pollutant concentration field (in time and space) as a function of the local environment (bathymetry), flow conditions (tides and wind-induced currents), and the location of the pens were performed to study their effects on the evolution of the waste plume. The presence of the fish farm pens cause partial blockage of the flow, leading to the deceleration of the approaching flow and formation of downstream wakes. Results of both the near-field area (area within 10 to 20 pen diameters of the fish-pen site) as well as far-field behavior of the pollutant field are presented. These detailed results highlight for the first time the importance of the wake vortex dynamics on the evolution of the near-field plume as well as the rotation of the earth on the far-field plume. The results provide an understanding of the impact of aquaculture fish-pens on coastal water quality.     

Seasonal variation in the white muscle biochemical composition of deep-sea macrourids in the North-east Atlantic

The peculiar limpet-like morphology of the genus Colobocentrotus is unique among the regular echinoids. This shape has been interpreted as an adaptation to life in areas of extreme wave exposure. In this study the attachment strength of C. atratus is compared with that of three sympatric species, Echinometra mathaei, Heterocentrotus trigonarius and Stomopneustes variolaris, which have more typical echinoid morphology and live in different microhabitats. For each species, the adhesion of individual sea urchins was measured as well as the tenacity of single tube foot and the mechanical properties of the tube foot stems. Colobocentrotus always presented the highest measured values, although not always significantly different from those of the other species. Of the mechanical properties of the stem measured, the stem extensibility was the only property that was significantly different among species. In general the stems of all the species studied became more extensible and more difficult to break with increasing strain rate, providing an adaptative advantage to the sea urchin when subjected to rapid loads such as waves. In terms of single tube foot tenacity, C. atratus tube feet attached with a tenacity (0.54 MPa) two times higher than the one of E. mathaei, H. trigonarius and S. variolaris (0.21–0.25 MPa). Individual sea urchins of the four species, however, attached with a similar strength (0.2–0.26 MPa). The calculation of safety factors showed that it is the very high number of adoral tube feet of C. atratus and not the overall shape of the animal that allows this species to withstand very high water velocities. However, C. atratus streamlined morphology may be a functional adaptation to reduce the impact of other hydrodynamic forces (such as wave impingement forces) or to cope with other selective environmental stresses (such as dessication), and thus to inhabit extremely exposed areas of the intertidal.     

Numerical simulation of the impacts of reflected tsunami waves on Pulo Raya Island during the 2004 Indian Ocean tsunami

There are numerous small populated islands near western Sumatra in Indonesia. The Weh, Banyak, Mentawai, and Enggano islands are home to many Indonesians. These small islands have been found to be effective at reducing tsunami wave energy on several occasions. At the same time, they are situated around Sumatras active subduction zone and are often among the areas most affected by tsunamisas in the case of Pulo Raya Island, in the western Aceh Jaya district about 800 m from Sumatra. Pulo Raya was devastated by the 2004 Indian Ocean tsunami. This study investigates the hydrodynamic processes of reflected tsunami waves and their impact on Pulo Raya, using a Cornell Multi-grid COupled Tsunami (COMCOT) model to simulate the tsunami wave runup and subsequent hydrodynamic processes. The simulation confirms eyewitness accounts that it was not the initial runup, but the reflected waves that devastated the worst-hit areas of the island. As a result, we can recommend that governments and communities on small islands need to anticipate the impacts of reflected waves following a tsunami, especially at lee side of of the island that was perceived to be a safer place by the island community before the 2004 Indian Ocean tsunami.     

Wind- and tide-induced currents in the Stagnone lagoon (Sicily)

The hydrodynamic circulation is analyzed in the coastal lagoon of Stagnone di Marsala, a natural reserve located in the north-western part of Sicily, using both experimental measurements and numerical simulations. Field measurements of velocities and water levels, carried out using an ultrasound sensor (3D), are used to validate the numerical model. A 3D finite-volume model is used to solve the Reynolds-averaged momentum and mass balance differential equations on a curvilinear structured grid, employing the k–e{\varepsilon} turbulence model for the Reynolds stresses. The numerical analysis allows to identify the relative contribution of the forces affecting the hydrodynamic circulation inside the lagoon. In the simulations only wind and tide forces are considered, neglecting the effects of water density changes. Two different conditions are considered. In the first both the wind stress over the free-surface and the tidal motion are imposed. In the second the wind action is neglected, to separately analyze the tide-induced circulation. The comparison between the two test cases highlights the fundamental role of the wind on the hydrodynamics of the Stagnone lagoon, producing a strong vertical recirculation pattern that is not observed when the flow is driven by tides only.     

Shallow wake behind exposed wood-induced bar in a gravel-bed river

Recent theoretical research indicates that dynamics of shallow flows can be strongly affected by waves developing on the free surface. In this study a shallow wake with an oblique pressure wave behind a model of a tree-centered emergent bar is investigated in a gravel-bed river. A bar was constructed in a shallow river reach with nearly uniform flow. The structure of flow was assessed with an array of velocimeters. Flow visualization with a solute of fluorescent dye complemented the measurements and provided qualitative information on the wake behavior. This study indicates that quantitative criteria for shallow wakes classification developed in laboratory setups are not straightforward in explaining the field results. According to the wake stability criteria, the expected dynamics for examined wake flow is a vortex street (VS) type. Contrary to this expectation, measurements and visualizations in this study show that mean momentum differential and turbulent vortices in the wake decrease stronger than expected in VS type and therefore the wake should be classified as unsteady bubble type with a weak downstream instability. Analysis of velocity differential dynamics in the examined shallow wake suggests that the bed friction alone is insufficient to explain the inconsistency of VS criterion whereas accounting for advective fluxes driven by inhomogeneous pressure field leads to a correct prediction of the wake behavior.     

Canopy-wake dynamics and wind sheltering effects on Earth surface fluxes

The atmospheric boundary layer adjustment at the abrupt transition from a canopy (forest) to a flat surface (land or water) is investigated in a wind tunnel experiment. Detailed measurements examining the effect of canopy turbulence on flow separation, reduced surface shear stress and wake recovery are compared to data for the classical case of a solid backward-facing step. Results provide new insights into the interpretation for flux estimation by eddy-covariance and flux gradient methods and for the assessment of surface boundary conditions in turbulence models of the atmospheric boundary layer in complex landscapes and over water bodies affected by canopy wakes. The wind tunnel results indicate that the wake of a forest canopy strongly affects surface momentum flux within a distance of 35–100 times the step or canopy height, and mean turbulence quantities require distances of at least 100 times the canopy height to adjust to the new surface. The near-surface mixing length in the wake exhibits characteristic length scales of canopy flows at the canopy edge, of the flow separation in the near wake and adjusts to surface layer scaling in the far wake. Components of the momentum budget are examined individually to determine the impact of the canopy wake. The results demonstrate why a constant flux layer does not form until far downwind in the wake. An empirical model for surface shear stress distribution from a forest canopy to a clearing or lake is proposed.     

Comparative biometry of Eunicella singularis (Gorgonian) sclerites at East Mediterranean Sea (North Aegean Sea, Greece)

The two forms of Eunicella singularis sclerites, spindles and clubs, were examined in two sites in East Mediterranean Sea, Greece. The comparison of the sclerites size was based on the hydrodynamic profile of the sites (the site of Arethoussa was exposed and the Phidonissi site was sheltered), on the sites bathymetry (AR 5–8 m, AR 9–13 m, PH 5–10 m, PH 11–13 m) and on the position occupied by the sclerites on the gorgonian colonies (top, middle and base). With the usage of image system analysis the following microfeatures were measured or calculated: projection, length, width, elongation factor, compactness factor, length × width and length/width. The present study confirms the hypothesis that spindles are involved in the recovering of the gorgonian colonies and clubs contribute to the flexion capacity of the colonies. The spindles of the shallow E. singularis colonies (AR 5–8 m) were significantly bigger (length, width) compared with the others, in order to assure the best recovery of the colonies after their flexion, induced by higher water current velocity in shallow water. The clubs occupy the intern part of the mesoglea and their size (length, width) increased in colonies from the shallow exposed site in order to facilitate the gorgonian flexion. The present study demonstrates the gorgonian adaptation (in a microscopic scale) to the environmental pressure of hydrodynamic conditions.     

Mesozooplankton community structure in offshore and coastal waters of the Ionian Sea (eastern Mediterranean) during mixed and stratified conditions

Depth-stratified samples, collected during a period where the water column was vertically mixed (March 2000) and a period of thermal stratification (September 2000), were analyzed in order to investigate the horizontal and vertical distribution patterns and composition of mesozooplankton, especially copepod species assemblages, in a pelagic (Ionian Sea) and a coastal area (Patraikos Gulf) of the eastern Mediterranean. Total mesozooplankton abundance and biomass were significantly lower in the highly oligotrophic offshore waters of the Ionian Sea when compared to the semi-enclosed Patraikos Gulf during both seasons. Small-sized copepods dominated the mesozooplankton community. An ‘offshore’ and a ‘coastal’ copepod assemblage were defined in the surface layer (0–50 m) only during March when differences in environmental conditions (i.e., temperature, salinity and fluorescence) were strong between the two areas. Copepod vertical community structure in offshore waters differed between sampling months. In March one assemblage (0–200 m) was mainly identified, while in September three distinct assemblages (0–50, 50–100 and 100–200 m) were observed, related to different vertical distribution patterns of the various copepod species. A pronounced seasonal change of the dominant copepods was evident in the surface layer, where strong differences in hydrological properties were observed from March to September. Below this layer, the copepod community was relatively stable showing decreasing seasonal differences with increasing depth.     

As the world warms: rising seas, coastal archaeology, and the erosion of maritime history

The human history of coastal regions around the world has been under assault for decades, from forces that include dam building, coastal modifications, the destruction of wetlands, marine erosion, population growth and rampant development, looting, and other processes. Global warming will exacerbate the destruction of cultural resources in coastal zones through accelerated sea level rise, intensified storm cycles, and related coastal erosion. Although average global sea levels have been rising for ∼20,000 years, they slowed dramatically about 7,000 years ago. Rates of sea level rise now appear to be increasing rapidly due to growing anthropogenic emissions of carbon dioxide and other greenhouse gases. Global warming and rising seas, especially when combined with population growth and the implementation of measures designed to protect endangered coastal properties, threaten the deep maritime history of human migrations, settlement, and adaptations in coastal areas around the world. Ranging in age from the mid-Pleistocene to recent historic times, coastal archaeological sites contain invaluable data on ancient coastal societies, fisheries, and ecosystems. Archaeologists, historians, and other cultural resource managers must do more to anticipate, evaluate, and mitigate the effects of global warming, sea level rise, and coastal erosion on the long history of human maritime cultures.     

OHP–APT 2002 gravity wave campaign: waves,turbulence and forecasts

In July 2002, a multi-sensor campaign was conducted in southern France to investigate the hypothesized connection between gravity waves and optical turbulence. A generalized scidar (GS) was mounted on the 1.93 m diameter telescope at l’Observatoire de Haute-Provence (OHP). The GS provides continuous profiles of optical turbulence with 300 m vertical resolution from telescope altitude up to 25 km. Thermosondes, which provide in situ measurement of optical turbulence by measuring temperature variance, were launched at the OHP site and at a site approximately 20 km west-northwest of OHP. Gravity wave activity was deduced from temperature and wind velocity measured by radiosondes, which are part of the thermosonde system. In this paper, gravity waves were analyzed using techniques for simple two-dimensional mountain waves, with only fair results. Mesoscale models were run at moderately high resolution for the period. The forecasts were analyzed for wave activity, and a post processor model was used to diagnose the optical turbulence. Mountain waves were evident in the forecast, but quantitative comparison showed the forecast to be inadequate in predicting wave strength. The forecast optical turbulence was in fair agreement with measurements with notable exceptions. This paper is declared a work of the U.S. Government and is not subject to copyright protection in the United States. The U.S. Government’s right to retain a non-exclusive, royalty-free license in and to any copyright is acknowledged. Presented at the Turbulence and Waves in Stably Stratified Atmospheric Shear Flows: Measurements, High Resolution Simulations and Numerical Prediction Challenges Conference, 13–15 September 2004, Lighthill Institute of Mathematical Sciences, University College London, London, UK.     

Does iodine gas released from seaweed contribute to dietary iodine intake?

Thyroid hormone levels sufficient for brain development and normal metabolism require a minimal supply of iodine, mainly dietary. Living near the sea may confer advantages for iodine intake. Iodine (I₂) gas released from seaweeds may, through respiration, supply a significant fraction of daily iodine requirements. Gaseous iodine released over seaweed beds was measured by a new gas chromatography–mass spectrometry (GC–MS)-based method and iodine intake assessed by measuring urinary iodine (UI) excretion. Urine samples were obtained from female schoolchildren living in coastal seaweed rich and low seaweed abundance and inland areas of Ireland. Median I₂ ranged 154–905 pg/L (daytime downwind), with higher values (~1,287 pg/L) on still nights, 1,145–3,132 pg/L (over seaweed). A rough estimate of daily gaseous iodine intake in coastal areas, based upon an arbitrary respiration of 10,000L, ranged from 1 to 20 μg/day. Despite this relatively low potential I₂ intake, UI in populations living near a seaweed hotspot were much higher than in lower abundance seaweed coastal or inland areas (158, 71 and 58 μg/L, respectively). Higher values >150 μg/L were observed in 45.6% of (seaweed rich), 3.6% (lower seaweed), 2.3% (inland)) supporting the hypothesis that iodine intake in coastal regions may be dependent on seaweed abundance rather than proximity to the sea. The findings do not exclude the possibility of a significant role for iodine inhalation in influencing iodine status. Despite lacking iodized salt, coastal communities in seaweed-rich areas can maintain an adequate iodine supply. This observation brings new meaning to the expression “Sea air is good for you!”     

Energy dissipation, flow resistance and gas-liquid interfacial area in skimming flows on moderate-slope stepped spillways

With the re-evaluation and revision of a number of design floods, several embankment overtopping protection systems have been developed and a common technique is the construction of a stepped spillway on the downstream slope. For such moderate slope stepped channels, detailed air–water flow measurements were performed in a large facility with a focus on the rate of energy dissipation, flow resistance, air–water interfacial areas and re-aeration rates. Past and present experimental results showed a significant aeration of the flow. The median dimensionless residual head was about 3 × d_c for the 21.8° sloping chute and smaller than that for flatter slopes (θ = 3.4° and 15.9°). The flow resistance results yielded an equivalent Darcy friction factor of about 0.25 implying a larger flow resistance for the 21.8° slope angle than for smaller slope angles. The re-aeration rate was deduced from the integration of the mass transfer equation using measured air–water interfacial areas and air–water flow velocities. The results suggested an increasing re-aeration rate with increasing rate of energy dissipation. The stepped invert contributed to intense turbulence production, free-surface aeration and large interfacial areas. The experimental data showed however some distinctive seesaw pattern in the longitudinal distribution of air–water flow properties with a wave length of about two step cavities. While these may be caused by the interactions between successive adjacent step cavities and their interference with the free-surface, the existence of such “instabilities” implies that the traditional concept of normal flow might not exist in skimming flows above moderate-slope stepped spillways.     

Sea snakes anticipate tropical cyclone

Here, we report anticipatory behaviors of sea snakes and provide the first evidence for a sensory mechanism by which they survive a catastrophic cyclone. Sea kraits (Laticauda spp.) are normally abundant in littoral habitats at Lanyu (Orchid Island), Taiwan but disappeared coincident with falling barometric pressure prior to typhoon Morakot, which impacted the island severely during 7–9 August 2009. The abundance of sea kraits that are visible within the littoral zone correlates with barometric pressure, but not with precipitation or wind speed, which drives the surf. We found very little evidence of direct mortality caused by the storm, and the visible abundance of sea kraits following the storm returned to pre-storm levels. Data suggest that survival of sea kraits depends on the sensory perception of low pressures preceding a tropical cyclone, followed by behaviors which avoid the lethal storm energies potentially affecting this coastal population. Sea kraits likely find refuge in cavernous spaces beneath volcanic rocks of the seacoast.     

Medium-term impacts of hydraulic clam dredgers on a macrobenthic community of the Adriatic Sea (Italy)

Hydraulic dredging targeting the bivalve Chamelea gallina in the northern and central Adriatic Sea has been taking place for over 30 years. In the period 2000–2001, 73 commercial dredgers harvested the resource within the sandy coastal area of the Ancona Maritime District (central Adriatic Sea). Despite this, no study aimed at investigating the impact of the fishery on the macrobenthic community of the area has ever been carried out. Sampling was done at 6 monthly intervals in an attempt to relate the impact of hydraulic dredging to different levels of fishing intensity. Data regarding two depth strata (4–6; 7–10 m) were analysed separately by means of permutational multivariate analysis of variance. The results revealed an overall condition of moderate disturbance within the benthic community, especially so within the 4–6 m depth stratum. The response of the benthic community to varying intensities of fishing activity was rapid, occurring within 6 months. Differences in the response of benthic community to differing intensities of fishing activity were found between the two depth strata considered. Significant differences in multivariate location of the benthic community were revealed between the three disturbance levels in both depth strata. Differences in multivariate dispersion were detected above a threshold level of fishing intensity, only within the shallow community. Differences were found between depth strata relating to species diversity and evenness, with significant differences between levels of fishing intensity being evident only within the 4–6 m depth stratum. The results emphasised that, even in a benthic community that is typical of a moderately disturbed environment, the effects of fishing on community structure were still discernible over and above the natural variation.     

Spatio-temporal structure of pelagic larval and juvenile fish assemblages in coastal areas of New Caledonia,southwest Pacific

This study aims at describing the diversity and composition of larval and juvenile fish assemblages in coastal areas of New Caledonia, southwest Pacific, and identifying the environmental factors that influence the seasonal and spatial patterns of these assemblages. A total of 97 taxa belonging to 7 orders and 26 familis were captured in three bays near Nouméa by light trapping every month between January 2002 and June 2003. The assemblages were dominated by Clupeiform larvae and juveniles (96.4% of total abundance) and followed by Perciform larvae (3%). The number of taxa per sample varied from less than five in July–August to more than ten in October–November and abundances followed the same seasonal pattern. Analyses of similarity showed significant differences in the assemblages caught in the three bays and analyses of contribution to the dissimilarity revealed that these differences were due to the most abundant families. The constant part of the relationship between environmental variables and the composition of assemblages was assessed by the partial triadic analysis STATICO, a statistical approach that takes into account the strong seasonality of the data. Rainfall, wind direction and thermal stratification of the water column were found to play a major role in the structure of the assemblages, although tidal amplitude and wind speed became important when Clupeidae and Engraulididae were excluded from the analyses. The richness, relative abundances and seasonal variations of the assemblages caught in three bays under study are close to what has been observed elsewhere in the tropics. This study shows the efficiency of the STATICO analysis for identifying the environmental factors that have a permanent effect on assemblages and sorting them out from those which act temporally or on specific locations. The high abundances and diversity of coral-reef fish larvae observed in coastal zones of New Caledonia suggest that further studies are needed to fully explore the role of the coastal zones of New Caledonia as nurseries.     

Optical remote sensing of coastal plumes and run-off in the Mediterranean region

Sea surface colour data, derived from the Coastal Zone Colour Scanner (CZCS) archive, have been used to assess the space/time variability of coastal plumes and run-off in the Mediterranean Sea. A time series of 2645 scenes, collected by the CZCS from 1979 to 1985, was processed to apply sensor calibration algorithms, correct for atmospheric contamination, and derive chlorophyll-like pigment concentration. Individual images, remapped on a 1-km² pixel grid, were generated for each available day, and then mean values calculated pixel by pixel to form monthly, seasonal and annual composites. The results obtained must be taken with caution, due to the CZCS limitations in the quantitative assessment of bio-optical pigments when high concentrations of dissolved organics or suspended sediments are present, e.g. along littorals or within plumes. Marked differences appear in the distribution of water constituents between coastal zones and open sea, northern and southern near-coastal areas, western and eastern sub-basins. The oligotrophic character of the basin contrasts with areas of high concentration related to river plumes—Ebro (Ebre), Po, Rhone, Nile—, coastal run-off patterns, and persistent mesoscale features (e.g. coastal filaments and eddies). Seasonal variability appears to be high, with higher concentrations occurring over most of the basin in the cold season, when climatic conditions are favourable to coastal run-off and vertical mixing. Atmospheric forcing (wind and rainfall over continental margins) could play an important role in establishing the observed space/time distribution of water constituents. The impact of continental interactions (fluvial and coastal run-off), or that of exchanges between coastal zone and open sea, could have paramount influence on the biogeochemical fluxes in the entire basin.     

Seasonal contrasts in abundance and reproductive parameters of Penilia avirostris (Cladocera, Ctenopoda) in a coastal subtropical area

We studied the population dynamics and the reproductive biology of Penilia avirostris during three consecutive years on the inner shelf off Ubatuba, Brazil. Penilia avirostris individuals and its eggs and embryos were counted, measured, and classified into stages. The species occurred throughout the studied period, in a wide temperature range (14.8–28.2°C). Cladoceran densities were usually higher (>2,000 ind m⁻³) in warm seasons, when the water column was stratified as a consequence of bottom intrusions of the cold- and nutrient-rich South Atlantic Central Water. Juveniles, non-reproducing females, and parthenogenic females were the dominant developmental stages. Males and gamogenic females were rare and only occurred when females reached peak abundances. This suggests that in tropical and subtropical coastal seas gamogenesis in P. avirostris is not as common as in temperate seas, but may play a significant role in the density-dependent control of the population preceding unfavourable periods.