Host range and resistance to aspergillosis in three sea fan species from the Yucatan

Knowledge of host range and mechanisms of disease resistance is fundamental to predicting impacts and spread of marine diseases. Prevalence of signs of aspergillosis, caused by the terrestrial fungus Aspergillus sydowii, was assessed in the Yucatan among three species of sea fan: Gorgonia ventalina, G. cf. mariae, and G. flabellum. The Yucatan is unusual in that ranges of all three sea fan species overlap at many sites along a cline of increasing depth, allowing us to evaluate potential causes of differing prevalence among species. Signs of aspergillosis were observed in all the three species. However, the prevalence of infection in G. cf. mariae, a deep-water species, was consistently low even at sites where G. ventalina was common and had moderate levels of infection. Because G. cf. mariae is a relatively small-stature sea fan, we compared the prevalence of signs in G. cf. mariae to a subset of comparatively sized G. ventalina. G. ventalina had a significantly higher prevalence of aspergillosis, indicating that size does not explain the lower prevalence in G. cf. mariae. Prevalence of disease signs on the shallow-water G. flabellum was also significantly higher than G. cf. mariae, but did not differ from G. ventalina. To test the hypothesis that higher chemical resistance accounts for the low prevalence of disease in G. cf. mariae, we measured the response of A. sydowii in culture to antifungal extracts from each sea fan species. Significantly lower fungal growth rates on extracts of G. cf. mariae than G. ventalina support the hypothesis that G. cf. mariae is more chemically resistant to aspergillosis. When comparing sea fan disease across different regions of the Yucatan, we detected significantly higher prevalence in G. ventalina near Akumal than further north near Cozumel and Puerto Morelos. In Akumal, there was a strong positive correlation between sea fan size and disease, with the largest fans showing the highest prevalence and severity in all three species. In addition, prevalence of aspergillosis in G. ventalina was density-dependent in Ak.     

Variation in measures of immunocompetence of sea fan coral, <Emphasis Type="Italic">Gorgonia ventalina</Emphasis>, in the Florida Keys

Aspergillosis is a widespread disease that has impacted the demography of the Caribbean sea fan coral, Gorgonia ventalina. The innate coral immune defenses can be measured as constitutive levels of immune proteins (peroxidase [POX], prophenoloxidase [PPO], lysozyme-like activity [LYS], exochitinase [EXOC]), antioxidant (superoxide dismutase [SOD]), and antimicrobial (antibacterial [AB] and antifungal [AF]) activity. Therefore, variations in these parameters across a geographic region could provide clues to the role of environment in disease. This study examined healthy sea fans collected in July 2005 from six offshore sites in the Florida Keys lying between 24.569°N and 25.220°N, a distance of ~145 km. Contrary to expectations, small (<15 cm) colonies did not differ significantly from large colonies (>15 cm) in the protein-based levels of activity in any of the measured parameters. However, there were significant differences in many of the parameters among sites, and Molasses Reef and Looe Key Reef were the most different in POX, PPO, SOD, and AF activity. This suggests that there are potential site-specific environmental factors that shape the immune physiology of colonies. Several proxies of environmental stress were also regressed against levels of the immune parameters. The proxies included 10 year averages of benthic community composition, 5 year averages of water quality, and historic aspergillosis disease prevalence and severity. Generality about environmental drivers was limited by assaying only six sites, but several patterns did emerge. SOD, EXOC, and AF activity were all correlated with percent bare substrate cover, suggesting that certain immune components may be activated in low coral environments. LYS and EXOC activity were positively correlated with dissolved inorganic nitrogen (DIN), one proxy of water quality. There were no relationships between any of the measured immune parameters and previous disease prevalence and severity. This study is a first step in evaluating levels of within- and between-site variation in coral immunity and investigating possible environmental drivers.     

Fungal disease resistance of Caribbean sea fan corals (Gorgonia spp.)

An on-going, Caribbean-wide epizootic affecting sea fan corals (Gorgonia spp.) is caused by the fungus Aspergillus sydowii (Thom et Church). We examined the role of crude extracts in resistance of two species of sea fans, Gorgonia ventalina (L.) and G. flabellum (L.), against A. sydowii and a bacterial pathogen of fish, Listonella anguillarum (MacDonell et Colwell). Sea fans were collected in January 1997 from San Salvador, Bahamas, and in June 1997 and January 1998 from Alligator Reef, Florida Keys, USA. Crude extracts from both species were tested to determine concentrations inhibiting germination of A. sydowii spores. Crude extracts from both species inhibited spore germination at concentrations as low as 1.5 mg ml⁻¹; most samples were active at 5 to 10 mg ml⁻¹. These concentrations are within the range estimated in living tissue and were higher in healthy colonies suggesting their role in mediating disease susceptibility. We also detected within-colony gradients in antifungal activity, which varied with the disease state of the colony. In healthy sea fans, resistance was highest at colony edges and lowest in medial and central regions of the colony. Among sea fans with lesions in the colony center, resistance in tissue from proximal and medial regions was as high as tissue from the colony edge (i.e. distal region). The increase in antifungal activity suggests an inducible response by the coral host to the fungal pathogen. This response is most evident among sea fans with lesions in the colony center and not among colonies with lesions at the edge. Antibacterial activity of crude extracts against L. anguillarum was highest at the colony edge but did not vary with disease state or tissue location. Received: 10 March 1999 / Accepted: 10 November 1999     

Ammonium and free amino acid uptake by a deep-sea mussel (Bathymodiolus sp., undescribed) containing methanotrophic bacterial symbionts

The morphology of the lophophore and mouth was measured for freshly collected colonies of seven common bryozoan reef species at three sites along the central Caribbean coast of Panamá during the dry season, from the end of December 1988 through May 1989. Characters measured or scored include the number of tentacles, circumference of the lophophore, abanal and anal tentacle length, abanal and anal tentacle spacing, and perimeter of the mouth. Taxa studied include three species each of Stylophoma Levinsen, and Steginoporella (Smitt), and one species of Trematooecia Osburn. Individuals were collected from both continental and offshore fringing reefs from depths of 1 to>30 m. Terrestrial runoff from heavy tropical rains, sedimentation, and sea exposure vary greatly between sites. Congeneric species showed small but consistent differences in lophophore size, but little or no difference in spacing of tentacles or perimeter of the mouth. This suggests that closely related species feed on similarly sized particles despite their overall differences in zooidal size. Lopophore morphology also varied intraspecifically between reefs, particularly in the length of the tentacles and spacing between tentacles. Patterns of variation were similar for all species, which implies that species shift their diets in similar directions between the different reefs. The combination of these patterns suggests that niche diversification in feeding does not occur among congeneric species in the cheilostomes examined.     

Influence of UV radiation on the survival of larvae from broadcast-spawning reef corals

Effects of ambient ultraviolet light on the survivorship of eggs and planulae larvae was investigated for three species of broadcast-spawning reef corals, Acropora palmata, Montastraea annularis, and M. franksi. Eggs and larvae from these corals contain high concentrations of lipids (60–70% by weight) and float in surface waters for 3–4 days following spawning. Larvae originating from colonies living at deeper sites on the reef exhibited significantly lower survivorship than conspecifics originating from parents in shallow water when experimentally exposed for up to 4 days to ambient surface levels of ultraviolet radiation (UVR). Concentrations of the UVR-protective compounds correlated positively with survival and matched concentrations found in parent colonies, implying that higher concentrations of ultraviolet B protective compounds are responsible for greater survival of eggs and larvae from shallow compared to deeper-dwelling parents. Ultraviolet B appears to be responsible for most of the observed differences in larval survivorship with ultraviolet A playing a minor or insignificant role. Data presented here indicate that coral recruits on Caribbean reefs and elsewhere may originate primarily from adult colonies dwelling in shallow water.Communicated by P.W. Sammarco, Chauvin     

Exploring the role of chitinolytic enzymes in the sea fan coral, <Emphasis Type="Italic">Gorgonia ventalina</Emphasis>

Chitinases are involved in defense against chitinaceous pathogens in both invertebrates and vertebrates. This study investigated whether sea fan corals, Gorgonia ventalina (Linnaeus) collected from the Florida Keys between the summer of 2002 and the summer of 2005 contain chitinases, and whether these enzymes could serve an analogous protective role against the fungal pathogen, Aspergillus sydowii (Thom et Church). Crude extracts of healthy sea fans contained detectible levels of exochitinase activity in an in vitro microplate assay using fluorogenic substrates. The exochitinase levels decreased upon injury, agitation, or manipulation of the tissue. A concurrent, transient increase of exochitinase in the surrounding water suggests that sea fans release chitinases as a response to these stresses. By contrast, endochitinase was detected in only 2 of 15 sea fans (13%), suggesting a high degree of variation for this enzyme. Sea fan chitinase-containing seawater and anion exchange chromatography fractions were both active against A. sydowii in an absorbance-based antifungal assay. The presence of chitinases in sea fan extracts, their release into the surrounding water upon stress, and their activity against A. sydowii suggests that further study of these enzymes in coral stress responses is warranted.     

Bioerosion in coral reef communities in southwest Puerto Rico by the sea urchin<Emphasis Type="Italic"> Echinometra viridis</Emphasis>

Bioerosion is one of the most important structuring forces in coral reef communities. The bioerosion impact of several species of fish, sponges and sea urchins have been estimated in the Caribbean; however, there is no information for one important species, the red sea urchin Echinometra viridis. This species can be found in high densities in many localities. In this study, bioerosion rates for E. viridis were estimated in two patch reefs off La Parguera, southwest Puerto Rico, using the population size-class distribution, average densities, and the CaCO ₃ content in fecal pellets produced over 24 h. Average densities of urchins along four depth intervals were estimated using 40-m transect lines and 1-m ² quadrats. Average size and size-structure distribution were estimated by measuring the diameter of 180–220 urchins haphazardly collected at each of the four depth intervals. The ignition–loss method was used to estimate the daily rate of bioerosion. Fecal pellets produced by the urchins over a 24 h period were collected in buckets, rinsed in fresh water, dried for 24 h at 70°C, and then burned in a furnace at 550°C, first to eliminate organics, and then at 1000°C until constant weight to determine the amount of calcium carbonate (CaCO ₃) in the fecal pellets. HCl (10%) was then added to the remainder of the sample to test for presence of CaCO ₃. Average individual CaCO ₃ bioerosion rates were estimated at 0.181±0.104 g day ^-1. Average densities (0.77–62.0 ind. m ^-2), size (2.01–2.44 cm) and average bioerosion rates (0.114–4.14 kg m ^-2 year ^-1) were significantly higher in shallow areas (1–3 m) in both reefs. Bioerosion rates were low compared to those reported for parrotfish, endolithic sponges and the black sea urchin D. antillarum, but they were higher than those reported for other small-sized sea urchins in the Caribbean and the Indo-Pacific.     

Transplantation of juvenile corals: a new approach for enhancing colonization of artificial reefs

 Coral reefs in the northern Gulf of Eilat are exposed to continuous man-made disturbances, resulting in decreased coral coverage and reduced recruitment at the Nature Reserve of Eilat. The construction of artificial reefs on sandy bottoms is a possible option to decrease diving pressure on natural reefs. In the present study we tested this hypothesis by submerging an experimental artificial reef anchored to the bottom at 18 m depth and floated vertically 3 m below water surface. The reef was composed of PVC plates, attached both vertically and horizontally along a wire. Propagules of two coral species, the stony coral Stylophora pistillata and the soft coral Dendronephthya hemprichi, were transplanted to this artificial reef. Planulae of S. pistillata were obtained during the breeding season, seeded in petri dishes in the laboratory and after 2 wk the dishes were transferred to the experimental artificial reef. Automized fragments of D. hemprichi which had previously settled on 10 × 10 cm PVC plates were transplanted onto the experimental artificial reef. The survivorship of the transplanted D. hemprichi colonies was significantly higher on the lower sides of shallower plates. Survivorship of S. pistillata colonies increased with depth when located on the vertical plates, or on the upper sides of the horizontal plates. The highest survivorship of this coral was on the vertical plates and on the upper sides of the horizontal plates, while very low survivorship was recorded on the lower sides. The results indicate that vertical artificial surfaces offer the optimal biotic and abiotic conditions for the survival of the two examined corals. The vertical plates are characterized by low sed imentation rates, low coverage of turf-algae, minimal grazing by sea urchins and absence of the competitor tunicate Didemnum sp. In addition, the vertical orientation of the experimental plates reduces shading and offers the required light intensity for zooxanthellate corals such as S. pistillata. Only a few studies to date have tried to implement artificial reefs in a coral reef environment. The results of the present study indicate the potential of enhancing recruitment of corals by transplantation of juvenile recruits onto appropriate artificial structures. Maximal survivorship of these recruits is dependent upon the structural features of the artificial reef, which should offer optimal conditions. Received: 25 May 1996 / Accepted: 15 July 1996     

Sexual reproduction and external brooding by the Caribbean gorgonianBriareum asbestinum

The reproductive biology of the gonochoricBriareum asbestinum (Pallas), a common Caribbean gorgonian, was studied in the San Blas Islands (Panama), La Paguera (Puerto Rico) and the Bahamas. Of 721 colonies examined at the height of the reproductive season, during the summers of 1985 to 1988, all were either male or female. No hermaphroditic colonies or polyps were observed. The sexratio of Panama populations was significantly biased in favor of males (2.1:1,n=454) over all four years of the study. A significant male bias was also found in populations sampled in Puerto Rico (2.3:1,n=143) and in the Bahamas (2.5:1,n=124). The consistency of this geographically widespread skewed sex-ratio is unique among octocorals and scleractinians. Ooyctes appear annually in September and reach maximum diameter (600 to 900µm) in June and July of the following year. The 3 to 5 mo developmental cycle of spermaries is shorter than that of females and begins in March. Spawning in males is synchronous and occurs following the full moons of June and July. Fertilization is internal. Embryos are released from polyps very early in development, often whilst still in the process of cleaving. Embryos remain attached to the outside of the colony for 3 to 5 d, many becoming entrapped in mucous sheets secreted by the colonies. Larvae are negatively buoyant and settle rapidly once displaced from the colony. Males become reproductive at smaller branch sizes than females. Reproductive effort (gonads polyp^–1 and total gonad volume polyp^–1) for both males and females increased with increasing branch size and in polyps away from the tip and base of the branch.Please address all correspondence and requests for reprints to Dr Brazeau at his present address: Department of Biology, University of Houston, Houston, Texas 77204-5513, USA     

Growth of the kelp Ecklonia radiata near the northern limit of its range in Western Australia

The length, growth and survivorship of mature sporophytes of Ecklonia radiata (C.Ag.) J. Agardh were measured on two patch reefs within the lagoon of a high-latitude, coralreef atoll (Easter Group, Houtman Abrolhos; 28° to 29° S; 113°35 to 114°03E) for 1 yr (1982–1983). The sites differed in their proximity to the perimeter reef, but had similar regimes of temperature, light, nutrient concentration and water movement. Kelp length, growth rate and survivorship differed significantly between sites, although plant density was similar (less than l m^-2). At the site near the lagoon perimeter, the central lamina averaged 381 mm in length, grew at an annual mean rate of 1.28 mm d^-1, and 56% of tagged individuals had died after one year. The corresponding values for the site near the centre of the lagoon were: 257 mm, 0.75 mm d^-1 and 92%. Three other sites on the coastal limestone reefs near Perth (400 km to the south) were studied for various intervals over a 5 yr period (April 1979 to August 1984). The kelp from the low-latitude sites were smaller, grew more slowly, and suffered similar or greater mortality than their southern counterparts. Latitudinal comparisons were confounded by differences in kelp density between sites, but there is no evidence for density-dependent effects on the measured parameters across the range of natural densities observed. Growth rates at all sites were negatively correlated with ambient sea temperatures when these were above 20°C. There was no evidence of adaptation to the higher sea temperatures experienced at the Abrolhos, and temperature cannot be dismissed as a factor controlling the growth of the species near the northern limit of its distribution on the Western Australian coast. Other factors however must be involved in determining the latitudinal position of that limit.     

Life-history variation in three coexisting cheilostome bryozoan species of the genus Stylopoma in Panamá

Life-history variation was studied in three sympatric species of Stylopoma Levinsen [S. spongites (Pallas), S. projecta Canu and Bassler and Stylopoma n. sp. 15] in Panamá. Bryozoan colonies were collected from 27 reefs along 300 km of the Caribbean coast of Panamá. The distribution and abundance of each species were very patchy, but with broad overlap in occurrence among localities and depths. Nevertheless, species differed considerably in colony size, size at first reproduction and numbers of brooding larvae; implying that interspecific differences in life-history traits may contribute to their coexistence. To examine closely this variation in life-history patterns, we grew, in a common garden experiment, the offspring of the two most common species that were obtained from parent colonies collected from several reefs. There were highly significant differences in growth rates and the timing and extent of sexual reproduction which corresponded well to patterns observed in individuals from the field. Other factors, including size of larvae, extent of secondary zooidal calcification and numbers of avicularia were also correlated with differences in life histories. Despite this additional complexity, however, ecological consequences of trade-offs in life history among modular species such as Stylopoma spp. appear very similar to those among unitary species.     

Effects of Artisanal Fishing on Caribbean Coral Reefs

Abstract:  Although the impacts of industrial fishing are widely recognized, marine ecosystems are generally considered less threatened by artisanal fisheries. To determine how coral reef fish assemblages and benthic communities are affected by artisanal fishing, we studied six Caribbean islands on which fishing pressure ranged from virtually none in Bonaire, increasing through Saba, Puerto Rico, St Lucia, and Dominica, and reaching very high intensities in Jamaica. Using stationary-point fish counts at 5 m and 15 m depth, we counted and estimated the lengths of all noncryptic, diurnal fish species within replicate 10-m-diameter areas. We estimated percent cover of coral and algae and determined reef structural complexity. From fish numbers and lengths we calculated mean fish biomass per count for the five most commercially important families. Groupers (Serranidae), snappers (Lutjanidae), parrotfish (Scaridae), and surgeonfish (Acanthuridae) showed order-of-magnitude differences in biomass among islands. Biomass fell as fishing pressure increased. Only grunts (Haemulidae) did not follow this pattern. Within families, larger-bodied species decreased as fishing intensified. Coral cover and structural complexity were highest on little-fished islands and lowest on those most fished. By contrast, algal cover was an order of magnitude higher in Jamaica than in Bonaire. These results suggest that following the Caribbean-wide mass mortality of herbivorous sea urchins in 1983–1984 and consequent declines in grazing pressure on reefs, herbivorous fishes have not controlled algae overgrowing corals in heavily fished areas but have restricted growth in lightly fished areas. In summary, differences among islands in the structure of fish and benthic assemblages suggest that intensive artisanal fishing has transformed Caribbean reefs.     

Possible Environmental Factors Underlying Amphibian Decline in Eastern Puerto Rico: Analysis of U.S. Government Data Archives

Abstract: The past three decades have seen major declines in populations of several species of amphibians at high elevations in eastern Puerto Rico, a region unique in the humid tropics because of the degree of environmental monitoring that has taken place through the efforts of U.S. government agencies. I examined changes in environmental conditions by examining time-series data sets that extend back at least into the 1980s, a period when frog populations were declining. The data include forest cover; annual mean, minimum, and maximum daily temperature; annual rainfall; rain and stream chemistry; and atmospheric-dust transport. I examined satellite imagery and air-chemistry samples from a single National Aeronautics and Space Administration aircraft flight across the Caribbean showing patches of pollutants, described as thin sheets or lenses, in the lower troposphere. The main source of these pollutants appeared to be fires from land clearing and deforestation, primarily in Africa. Some pollutant concentrations were high and, in the case of ozone, approached health limits set for urban air. Urban pollution impinging on Puerto Rico, dust generation from Africa ( potential soil pathogens), and tropical forest burning ( gaseous pollutants) have all increased during the last three decades, overlapping the timing of amphibian declines in eastern Puerto Rico. None of the data sets pointed directly to changes so extreme that they might be considered a direct lethal cause of amphibian declines in Puerto Rico. More experimental research is required to link any of these environmental factors to this problem.     

Comparative aspects of sexual reproduction in the Caribbean coral genus Diploria (Scleractinia: Faviidae)

The increasing decline of Caribbean reef-building species underlines the importance of more information on their reproductive biology and ecology. This study compares the reproductive biology of the three species of Diploria, an important Caribbean reef-building genus affected by bleaching and disease, by: (a) characterizing their gametogenetic cycles simultaneously, (b) exploring the spatial and temporal variability in reproductive traits within and across species, (c) assessing fecundity and the minimum size of sexual reproduction, and (d) comparing information with other studies in the Caribbean. Starting in 1999, one tissue core was collected every month (for 17 months) from each of at least five large, tagged colonies of each species in La Parguera, Puerto Rico. Three more temporally spaced samplings were done during summer of 2000 and winter–spring of 2001 and 2002. Tissues were fixed in Helly’s solution, rinsed in fresh water, decalcified with 10% HCl, and preserved in 70% ethanol, embedded in paraplast, cut, and thin slides (7 μm) prepared and stained with Heidenhain’s Aniline-Blue method. Maximum egg size, number of eggs and spermaries were measured and gametogenetic cycles assessed. Microscopic observations confirmed that all three species were simultaneous hermaphrodites with a single, annual gametogenetic cycle. Spermatocytes and oocytes developed within the same mesentery but were not intermingled. Female gametes developed several months earlier than that of males, but both reached maturation simultaneously. Minor differences in the onset of gametogenesis were found for D. strigosa and D. clivosa, with both spawning after 10 p.m. between 8 and 10 days after the August and/or September full moons. D. labyrinthiformis on the other hand, began oogenesis in early July and spawned after 11 p.m. between 7 and 10 days after the April and/or May full moons. Spatial and temporal variability in mean number of spermaries and eggs/mesentery among colonies within and among species were found. D. labyrinthiformis had consistently significant higher mesenterial and polyp fecundity compared to the other two species over the 3 years. Average egg diameter varied between 240 and 246 μm and was similar among the three species. D. strigosa and D. clivosa sexual reproductive characteristics were similar to those of other large broadcast spawning Faviidae (i.e. Montastraea spp) in the region. In contrast, D. labyrinthiformis was a spring spawner (similar to Colpophyllia natans in Puerto Rico), which together with its significantly different micromorphology suggests that it might be phylogenetically more distant to the other taxa.     

Spatial variation in population dynamics in a colonial ascidian (Botryllus schlosseri)

Recent interest in the dynamics of marine invertebrate populations has focused largely on taxa with an open population structure. However, in many colonial taxa with limited larval dispersal, settlers may be locally derived. Consequently, dynamics may vary among sites that are separated by relatively short distances. This study explored spatial variation in temporal dynamics of colonial ascidians (Botryllus schlosseri Pallas) inhabiting five sites distributed along a ≈ 17-km temperature and phytoplankton gradient in the Damariscotta River estuary, Maine, USA. Settlement and population densities and sexual reproductive status were assayed throughout the summer seasons of 1996 and 1997. Sexual reproduction and larval settlement commenced earlier in the summer in up-river populations, which subsequently underwent a seasonal population explosion that was much smalier in down-river populations. Two peaks in settlement density up-river (in early July and early September) suggest that colonies there may have completed two sexual generations, in contrast to a single generation at down-river sites. Similar spatial variation is expected among populations of other taxa with limited larval dispersal when they are distributed across environmental gradients. Published online: 18 September 2002     

Evidence for restricted gene flow over small spatial scales in a marine snapping shrimp <Emphasis Type="Italic">Alpheus angulosus</Emphasis>

Despite the apparent absence of geographic barriers, connectivity among marine populations may be restricted by, for example, ecological or behavioral mechanisms. In such cases, populations may show genetic differentiation even over relatively small spatial scales. Here, mitochondrial sequence data from the cytochrome oxidase I (COI) gene and seven polymorphic microsatellite markers were used to investigate fine geographic scale population genetic structure in the snapping shrimp Alpheus angulosus, a member of the A. armillatus species complex, from collections in Florida, Jamaica, and Puerto Rico carried out from 1999 to 2005. The COI data showed a deep divergence that separated these samples into two mitochondrial clades, but this divergence was not supported by the microsatellite data. The COI data reflect past population divergence not reflected in extant population structure on the whole genome level. The microsatellite data also revealed evidence for moderate population structure between populations as close as ∼10 km, and no evidence for isolation by distance, as divergences between near populations were at least as strong as those between more broadly separated populations. Overall, these data suggest a role for restricted gene flow between populations, though the mechanisms that reduce gene flow in this taxon remain unknown.     

Patterns of distribution and composition of sea urchin assemblages on Brazilian subtropical rocky reefs

Sea urchins are a key group of herbivores in both temperate and tropical food webs because they control macroalgal cover, and consequently influence primary productivity and phase shifts on reefs. Despite being abundant on southwestern Atlantic reefs, sea urchin distributions, and their association with abiotic and biotic variables, are poorly known. In this study, sea urchin assemblages were surveyed in 2011 at multiple depths at eight sites in Arraial do Cabo (Brazil, 22°57′S/41°01′W), with sites split between a colder, more wave-exposed location, and a warmer, more sheltered location. The influence of this large-scale physical gradient, along with changes in depth and substrate complexity, on sea urchin densities was then investigated. Predator biomass was low and did not vary significantly among sites. Among the seven species recorded, Paracentrotus gaimardi, Echinometra lucunter and Arbacia lixula were dominant. Linear mixed-effects models indicated that location was important, with mid-sized P. gaimardi individuals and A. lixula more common at cooler, exposed sites and E. lucunter more abundant at warmer, sheltered sites. Sea urchin densities typically decreased with increasing depth, probably caused by changes in factors such as light, wave exposure, and sedimentation. Substrate complexity had a positive effect on the abundance of all species, presumably because of the increased availability of refuges. Physical gradients have important consequences for urchin distributions and their ecological functions at relatively small spatial scales on these reefs, and should be incorporated into herbivore monitoring programmes. Research is also required to examine how differential sea urchin distributions affect benthic dynamics.     

Influence of sea surface temperature on reproductive period and size at maturity of brown shrimp (<Emphasis Type="Italic">Farfantepenaeus californiensis</Emphasis>) in the Gulf of California

Reproductive period and size at maturity of the brown shrimp Farfantepenaeus californiensis were analyzed for correspondence to sea surface temperature (SST) in three zones of the Gulf of California. Mature females from fishing areas in the north (Puerto Peñasco), center (Guaymas), and south (Mazatlán), and monthly SST were examined. Average SST for 1983–2000 decreased from Mazatlán (26.2±0.2°C) to Puerto Peñasco (22.6±0.3°C). The seasonal variation in SST between coldest and warmest months was 7.8°C in Mazatlán and 11.4°C in Puerto Peñasco. The size of shrimps at maturity was inversely correlated to SST, increasing from Mazatlán (121 mm total length) to Puerto Peñasco (154 mm total length). The reproductive period near Mazatlán is year-round. Guaymas and Puerto Peñasco have one period of high intensity. We conclude that warmer water and low seasonal variability allow brown shrimp to reproduce more frequently, but reach smaller size at maturity.Communicated by P.W. Sammarco, Chauvin     

DNA fingerprints of a gorgonian coral: a method for detecting clonal structure in a vegetative species

Clonal reproduction, a common life history strategy among sessile marine invertebrates, can lead to high local abundances of one to a few genotypes in a population. Analysis of the clonal structure of such populations can provide insight into the ecological and evolutionary history of the population, but requires markers that can identify individual genets. Forensic and demographic studies have demonstrated that DNA fingerprinting can provide markers that are unique for an individual genotype. We have generated DNA fingerprints for over 70 colonies of the clonal gorgonian, Plexaura A (Plexaura sp. A) collected from June 1990 through July 1991 in the San Blas Islands, Panama. DNA fingerprints within a singic individual were identical and fingerprinting resolved multiple genotypes within and among reefs. On one reef in the San Blas Islands, Panama, 59% of the colonies sampled were of one genotype and this genotype was not found on any other sampled reefs. A previous study using tissue grafts identified 13 putative clones on these reefs, while DNA fingerprints of the same colonies differentiated 17 genotypes. The present study demonstrates the utility of DNA fingerprinting for distinguishing clones and for identifying clonal structure of marine invertebrate populations.     

Quantifying site quality in a heterogeneous landscape: recruitment of a reef fish

Heterogeneity in site quality can play an important role in patterns of abundance and population dynamics. Yet, estimating site quality in natural systems can be problematic because site quality can (1) vary through ontogeny for a focal organism, leading to shifts in site quality with age, (2) be confounded with (or masked by) variation in traits of individuals populating the sites, and (3) be correlated with local density. For example, if high-quality sites attract more individuals but vital rates are density dependent, then observed vital rates will be relatively homogeneous in space despite strong heterogeneity in site quality. Here, we operationally define site quality for a reef fish as the mean survival time of juveniles transplanted to sites at a common density and size structure, with random assignment of individuals to sites to remove potential confounding effects of local variation in individual quality and density. Our assays using juvenile age classes of the six-bar wrasse (Thalassoma hardwicke) showed that site quality varied in space (i.e., among patch reefs) but was constant through time. Site quality increased with availability of the branching coral Pocillopora (which is used as a refuge), but decreased with density of a predator, the arc-eye hawkfish, Paracirrhites arcatus (which also uses Pocillopora). We experimentally added colonies of Pocillopora to reefs and (1) increased site quality, (2) enhanced natural settlement rates of six-bar wrasse, but (3) attracted more hawkfish predators, and (4) did not increase survival of juvenile fish under ambient densities. Our results suggest that Pocillopora increases site quality, but attracts greater densities of settlers and predators, resulting in increased density dependence and predation, which mask the underlying effects of Pocillopora on site quality (supporting the hypothesis of "cryptic density dependence"). Variation in site quality and the possible confounding effects of density and individual traits warrant more experimental study.