Are sea snakes pertinent bio-indicators for coral reefs? a comparison between species and sites

Classical sampling methods often miss important components of coral reef biodiversity, notably organisms that remain sheltered within the coral matrix. Recent studies using sea kraits (sea snakes) as bio-indicators suggest that the guild of predators represented by anguilliform fish (Congridae, Muraenidae, Ophichthidae, henceforth “eels” for simplicity) were far more abundant and diverse than previously suspected. In the current study, eel diversity (similarity and species richness indices) estimated via sea snake sampling (SSS) was compared among six areas of one of the main oceanic biodiversity hotspot of the Pacific Ocean (southwest lagoon of New Caledonia). Based on the eel diversity in the snakes’ diet, the results obtained in six areas, in two snake species, and using different estimates (ANOSIM, Shannon index…) were consistent, suggesting that SSS provided robust information. Analyses also suggested subtle, albeit significant, differences in the eel assemblages among islets. Such spatial differences are discussed in light of local management practices. As SSS is easy to use, cost-effective, and provides the best picture of eel assemblages to date, it can be employed to monitor the eel assemblages in addition to the snakes themselves in many areas of the Indo-Pacific Ocean, thereby providing an index of the top predator biodiversity of many coral reefs.     

Geographic and bathymetric patterns of mitochondrial 16S rRNA sequence divergence among deep-sea amphipods,Eurythenes gryllus

The physical uniformity of the deep sea suggests a lack of absolute barriers to faunal dispersal, and thus genetic homogeneity in broadly distributed species is expected. The deep-sea amphipod Eurythenes gryllus Lichtenstein (Crustacea: Lysianassoidea) is considered a panoceanic, cold-water stenotherm, with a vertical depth distribution from 184 to 6500 m. We surveyed mtDNA sequence diversity in E. gryllus to assess genetic diversity and population structure in different oceans and across traditionally defined bathyal and abyssal zones. DNA sequences (437 nucleotides length) from the mitochondrial large-subunit ribosomal RNA gene (16S rRNA) of 95 individuals, collected between 1982 and 1990 from 14 locations in the central North Pacific (including multiple samples on the slope of a seamount), castern and western North Atlantic, and the Arctic Ocean, were obtained. Our analysis of DNA sequence diversity indicates (1) genetic homogeneity among sites within the same depth zone at the scale of ocean basins; and (2) genetically divergent, cryptic taxa distributed at different depths, with the greatest diversity in the bathyal zone. These observations suggest that ecological and physical conditions are important isolating mechanisms that may lead to speciation in this group.     

Diversity and cover of a sessile animal assemblage does not predict its associated mobile fauna

Habitat-forming organisms often determine the structural properties and food resources available to a wide diversity of associated mobile species. Sessile invertebrate assemblages on marine hard substrates support an abundant fauna of mobile invertebrates whose associations with traits of their host assemblages are poorly known. To assess how changes to habitat-forming species are likely to affect their associated mobile fauna, the relationships between abundance, diversity and composition of mobile invertebrates and the diversity, cover and composition of the sessile assemblages they use as habitat were quantified in Sydney Harbour, Australia (33°50′S, 151°16′E). Similar compositions of sessile species were more likely to share a similar composition of mobile species, but univariate measures of the habitat (percent cover, species and functional diversity, prevalence of non-indigenous species) did not predict variation in associated mobile assemblages. These results demonstrate that in this habitat it is difficult to predict the diversity of marine assemblages based on common surrogate measures of biodiversity.     

Benthic foraminifera assemblages at Great Meteor Seamount

Foraminiferal assemblages found at Great Meteor Seamount were studied in August 1998. Communities of living foraminifera in surface sediments from the plateau (290–325 m water depth) and from the surrounding base (2,300–4,096 m) were compared in abundances, diversity, and species composition. In this oligotrophic region, densities were very low, but diversity was high. Highest numbers were observed at the deep stations north, south, and east of the seamount and at the shallow station in the north of the plateau. Lowest densities were recorded southwest of the plateau centre and at the lee side of the seamount. We explain this distribution pattern with variable amounts of fresh organic material, caused by local oceanic currents. Generally, plateau stations indicated coarser sediments, lower organic carbon content, and higher temperatures. The foraminiferal fauna showed bathyal to abyssal characteristics and similarities to assemblages previously described from other parts of the North Atlantic and other oceans. Several dominant species extended between the two habitats, on the plateau and in the surrounding deep sediments, but other species were found exclusively at deep stations, at plateau stations, or at the abyssal reference station.Communicated by O. Kinne, Oldendorf/Luhe     

Influence of the biological and physical environment on the vertical distribution of mesozooplankton and micronekton in the eastern tropical Pacific

The day/night vertical distributions of mesozooplankton and micronekton biomass and that of a large number of copepod species to a depth of 1 000 m are described and contrasted in detail from two eastern tropical Pacific stations, the DOME station, in a region of continuous upwelling and the BIOSTAT station, in a non-upwelling area. The effects of various biological parameters such as the zones of primary production and chlorophyll maxima plus physical parameters, such as temperature, salinity and oxygen concentrations, on the distributions of the species and mesozooplankton and micronekton biomass are examined. The thermocline depth appeared to have the greatest influence of all the physical factors on the vertical distribution of the copepod species. The vertical distribution of many species was truncated in the region of the oxygen minimum layer with very few species found below this layer. The vertical distribution of copepod molts in the top 1 000 m showed that the molts probably originated at the depths at which they were found and that the molts from the euphotic zone did not reach the deep water. Copepod species association at different depths showed that few species had common depth distributions during both day and night. The highest degree of association occurred at night in the region of the thermocline. At depths below the thermocline, the degree of similarity in vertical distributions was greatly reduced. The biomass of mesozooplankton at these two stations is compared to other regions of the tropical oceans described in the literature and shown to be among the highest values recorded. The oxygen minimum layer and the thermocline had the greatest impact on species vertical distribution. The biomass of mesoplankton was about twice as high and the number of copepods between three and four times as high at the DOME site as compared to the BIOSTAT site, and evidence suggested that this was influenced by the higher primary production in this region. The difference in micronekton biomass between sites was less, with DOME having about 1.2 to 2.2 the biomass. This suggests that the influence of the higher level of primary productivity at the DOME was evidence of the higher trophic levels.     

Invertebrate Morphospecies as Surrogates for Species: A Case Study

Environmental monitoring and conservation evaluation in terrestrial habitats may be enhanced by the use of invertebrate inventories, but taxonomic and logistic constraints frequently encountered during conventional taxonomic treatment have greatly restricted their use. To overcome this problem we suggest that nonspecialists may be used to classify invertebrates to morphospecies without compromising scientific accuracy. To test this proposition, large pitfall and litter samples of ants, beetles, and spiders from four forest types were sorted to morphospecies by a nonspecialist and to species by specialists. These data were used to generate morphospecies and species inventories and to estimate richness (α diversity) and turnover (β diversity), information frequently used in the above activities. Our results show that the estimates of richness of ants and spiders varied little between morphospecies and species inventories. Differences between estimates of beetle richness were largely influenced by errors of identification in two families, Curculionidae and Staphylinidae. But morphospecies and species inventories yielded identical ranking of forest type using richness. Turnover was assessed by sample ordination, which revealed similar clusters regardless of the type of inventory. Analysis of similarities of assemblages of ants and beetles showed significant differences between all forest types. Spider assemblages showed a lower level of discrimination. The assessment of turnover was consistent among inventories but different between the major taxa. Our findings suggest that morphospecies may be used as surrogates for species in some environmental monitoring and conservation, in particular when decisions are guided by estimates of richness and the assessment of turnover.     

Sediment disturbance and loss of beta diversity on subtidal rocky reefs

How changes in environmental complexity and heterogeneity affect beta diversity is poorly known. We investigated patterns of beta diversity in subtidal assemblages of algae and invertebrates in the northwest Mediterranean in relation to inclination of the substratum and sedimentation. Vertical and horizontal substrata supported distinct assemblages under low, but not under heavy, ambient loads of sediment. To test the hypothesis that sediment reduced the dissimilarity between assemblages, sedimentation was increased experimentally in plots established on vertical and horizontal surfaces at sites experiencing low ambient levels of sedimentation. Patterns were compared to those occurring at unmanipulated sites and at sites exposed to heavy loads of sediment about 2 km apart. After one year, assemblages on vertical substrata were indistinguishable from those occurring on flat surfaces at manipulated sites and both converged toward those occurring at sites exposed to heavy loads of sediment. Control sites still supported distinct assemblages on vertical and horizontal substrata by the end of the experiment. Similar effects of sediment were observed on recovering assemblages in experimental clearings. These results show that sediment increased similarity in assemblages overriding the influence of habitat complexity on beta diversity at small and large spatial scales.     

Vertical structure of very nearshore larval fish assemblages in a temperate rocky coast

Small-scale vertical patterns of larval distribution were studied at a very nearshore larval fish assemblage, during the spring–summer period of several years, at two depth strata (surface and bottom) using sub-surface and bottom trawls. A total of 4,589 larvae (2,016 from surface samples and 2,573 from bottom samples) belonging to 62 taxa included in 22 families were collected. Most larvae belonged to coastal species. Although inter-annual variations in larval density and diversity could be found, total larval abundance was always higher near the bottom whereas diversity was higher at the surface. A marked distinction between the structure of surface and bottom assemblages was found. Sixteen taxa explained 95% of the similarity among surface samples. Larvae which contributed most to this similarity included species like clupeiformes, sparids and serranids, and also blenniids, tripterygiids and some labrids. In the bottom samples, fewer species were present, with only six taxa, almost exclusively from species which lay demersal eggs, contributing to 95% of the similarity between samples. Larvae present at the surface were significantly smaller than at the bottom. For some of the most abundant species found at the bottom, only small larvae occurred at the surface while the whole range of sizes was present at the bottom, indicating that larvae may be completing the entire pelagic phase near the adults’ habitat. These results indicate that larval retention near the reefs probably occurs for these species, although for others dispersal seems to be the prevailing mechanism.     

Animal-sediment relations and community analysis of a Florida estuary

Five species assemblages of the intertidal infauna of Old Tampa Bay, Florida, USA are identified. Two assemblages are judged to constitute distinct communities, while a third is shown to be an interdigitation of the two communities. Dominance by on species is the prevalent pattern within the assemblages. Numbers of deposit feeders are found to be inversely correlated to that of filter feeders, and both trophic types are found to be correlated to the sediment parameters of median grain size, sorting and skewness. Three transects with three stations each were established along the south side of Courtney Campbell Causeway in Tampa Bay, Florida. A faunal sample (0.4 m²), a sediment sample, and a water sample were taken at each station in September, December, and March of 1968/1969. Sediment samples were wet-seived. Animal samples were reduced to numbers of organisms and biomass per species. Trellis diagrams and correlation tests were generated. Support is shown for the trophic group-amensalims hypothesis, however, the silt-clay fraction is apparently of lesser importance to deposit feeders in Florida sediments than in Buzzards Bay sediments. An attempt is made to relate an analysis of the optimal grain size for filter feeders to the trophic group-amensalism hypothesis. A view of communities as abstractions from continua is more realistic than communities as discrete units.     

Vertical stratification of mobile epiphytal arthropod assemblages between the canopy and understorey of subtidal macroalgae

This study examined patterns of faunal stratification between vertical strata by partitioning subtidal macroalgal communities into vertically contiguous (and hence paired) canopy and understorey habitats. Such floristic strata are often clearly defined in temperate subtidal communities and have been the focus of a range of other, primarily botanical, studies. Previous studies that have touched upon this subject have used statistical tests that require spatially independent samples, yet have collected samples that are often spatially contiguous and therefore not statistically independent. Here an analytical approach for examining faunal stratification in subtidal macroalgal assemblages using split-plot ANOVA for univariate data and a novel multivariate test suitable for analysing assemblage-level paired-sampled data is proposed. Differences in faunal assemblage structure between habitats were primarily attributed to the distribution of two functional feeding groups: filter-feeding and scavenging arthropods. Filter-feeders were more abundant amongst the canopy, whereas scavengers were more abundant in the understorey. No pattern was detected for herbivorous arthropods. These patterns are consistent with the feeding ecology of these functional groups and reflect expected differences in the relative availability of trophic resources between habitats, commensurate with the physical structure of the environments. Contrary to expectation, understorey algal habitats supported faunal assemblages that were as diverse, or more diverse than the canopy habitats, despite comprising smaller habitable spaces (in terms of algal biomass) and generally supporting fewer faunal individuals. Trophic stratification of epifaunal assemblages is suggested as a mechanism whereby faunal diversity is enhanced in these environments.     

Conservation of Stream Fishes: Patterns of Diversity, Rarity, and Risk

Abstract: North America has a rich fauna of freshwater fishes which attains greatest diversity in the central and southeastern United States. Many stream fishes have limited ranges and are locally rare and patchily distributed. Local diversity increases downstream and total diversity follows typical species-area relationships. Drainages linked with the large Mississippi system support more species than those of comparable area flowing directly to the sea and rivers isolated by falls have notably few species. The between-drainage component of diversity is large. Threats to this fauna, which are not addressed by management focused on threatened species, include fragmentation of drainage networks by impoundments and homogenization of faunas by interbasin connections and introductions. Conservation efforts require a biogeographic perspective; they should focus on streams of intermediate size (orders 4–6) plus the upstream portion of each drainage and should attempt to maintain total diversity and, inclusively, populations of rare or threatened species.     

Community responses to UV radiation. II. Effects of solar UVB on field-grown diatom assemblages of the Carribean

The effects of ambient solar UV on community productivity and structure were assessed during primary succession of benthic diatoms on artificial substrate in a coral reef of the Caribbean. Artificial substrates, partially enclosed by UV cutoff filters, were placed at a depth of 60 cm below surface. During the initial colonization stages, the assemblages exposed to the full solar spectrum had a mean productivity 43.4% lower than the assemblages exposed to PAR+UVA only. Some differences in species diversity of assemblages under the different UV treatments were also observed. Sensitive species to UVB exposure were Mastogloia angulata, M. ovata, M. paradoxa, Nitzschia longissima, Plagiogramma staurophorum, Rhopalodia musculus, and Surirella ovata. These UVB effects gradually diminished as succession proceeded; 5 to 6 weeks after the placement of the substrates in the water, no significant differences in productivity were observed between the different treatments, while after 6 weeks of growth, species diversity and evenness were higher, although not statistically significant, in the UVB-exposed assemblages. During the first 2 weeks of growth, the productivity under PAR+UVA was significantly lower than that under PAR only. Received: 12 July 1996 / Accepted: 20 November 1997     

Scale-dependent variation in coral community similarity across sites, islands, and island groups

Community similarity is the proportion of species richness in a region that is shared on average among communities within that region. The slope of local richness (alpha diversity) regressed on regional richness (gamma diversity) can serve as an index of community similarity across regions with different regional richness. We examined community similarity in corals at three spatial scales (among transects at a site, sites on an island, and islands within an island group) across a 10 000-km longitudinal diversity gradient in the west-central Pacific Ocean. When alpha diversity was regressed on gamma diversity, the slopes, and thus community similarity, increased with scale (0.085, 0.261, and 0.407, respectively) because a greater proportion of gamma diversity was subsumed within alpha diversity as scale increased. Using standard randomization methods, we also examined how community similarity differed between observed and randomized assemblages and how this difference was affected by spatial separation of species within habitat types and specialization of species to three habitat types (reef flats, crests, and slopes). If spatial separation within habitat types and/or habitat specialization (i.e., underdispersion) occurs, fewer species are shared among assemblages than the random expectation. When the locations of individual coral colonies were randomized within and among habitat types, community similarity was 46-47% higher than that for observed assemblages at all three scales. We predicted that spatial separation of coral species within habitat types should increase with scale due to dispersal/extinction dynamics in this insular system, but that specialization of species to different habitat types should not change because habitat differences do not change with scale. However, neither habitat specialization nor spatial separation within habitat types differed among scales. At the two larger scales, each accounted for 22-24% of the difference in community similarity between observed and randomized assemblages. At the smallest scale (transect-site), neither spatial separation within habitat types nor habitat specialization had significant effects on community similarity, probably due to the small size of transect samples. The results suggest that coral species can disperse among islands in an island group as easily as they can among sites on an island over time scales that are relevant to their establishment and persistence on reefs.     

Spatial variability of infaunal nematode and polychaete assemblages in two muddy subtidal habitats

Spatial variation of populations and their assemblages is an important component of many aspects of ecology, including the maintenance of species diversity. In nature, organisms are generally aggregated in patches or form gradients or other spatially related patterns. This investigation quantified the degree of spatial structure in benthic invertebrate assemblages. It examined the distribution of infaunal assemblages of different size, mobility and contrasting life-history strategies (i.e. meiofaunal nematodes and macrofaunal polychaetes) in two offshore muddy habitats in the Celtic Deep and the NW Irish Sea off the west coast of the United Kingdom. The more heterogeneous habitat in the NW Irish Sea was characterised by higher tidal stress and bottom temperature while greater water depth, mean particle diameter and organic carbon content was typical for the comparatively homogeneous environment in the Celtic Deep. In both habitats, the environmental conditions became increasingly dissimilar with separation. A total of 125 nematode and 88 polychaete species were recorded with 69% of the nematode and 49% of polychaete species present at both study sites. Occurrence frequency of species, species diversity and average similarity of assemblage composition was higher in the Celtic Deep than in the NW Irish Sea. Results from correlation analyses revealed statistically robust relationships of community similarity and sample distance. Given their small size and low mobility, nematodes were more susceptible to within-habitat physical variability than larger-sized, more mobile polychaetes. This, coupled with limits to long-distance dispersal and likely restrictions in gene flow, resulted in a significant decrease in community similarity with distance at the spatial scales sampled (i.e. within 0.1–23 km). Polychaetes, in contrast, combined a higher dispersal potential (>23 km) with a relatively high tolerance to within-habitat environmental variability and these were the most likely causes for non-significant relationships between the similarity of their assemblages and sample distance. The potential mechanisms causing the observed variation and implications of results for environmental management strategies are discussed. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Native plant diversity resists invasion at both low and high resource levels

Human modification of the environment is causing both loss of species and changes in resource availability. While studies have examined how species loss at the local level can influence invasion resistance, interactions between species loss and other components of environmental change remain poorly studied. In particular, the manner in which native diversity interacts with resource availability to influence invasion resistance is not well understood. We created experimental plant assemblages that varied in native species (1-16 species) and/or functional richness (defined by rooting morphology and phenology; one to five functional groups). We crossed these diversity treatments with resource (water) addition to determine their interactive effects on invasion resistance to spotted knapweed (Centaurea maculosa), a potent exotic invader in the intermountain West of the United States. We also determined how native diversity and resource addition influenced plant-available soil nitrogen, soil moisture, and light. Assemblages with lower species and functional diversity were more heavily invaded than assemblages with greater species and functional diversity. In uninvaded assemblages, experimental addition of water increased soil moisture and plant-available nitrogen and decreased light availability. The availability of these resources generally declined with increasing native plant diversity. Although water addition increased susceptibility to invasion, it did not fundamentally change the negative relationship between diversity and invasibility. Thus, native diversity provided strong invasion resistance even under high resource availability. These results suggest that the effects of local diversity can remain robust despite enhanced resource levels that are predicted under scenarios of global change.     

Natural and anthropogenic influences on the diversity structure of reef fish communities in the Tuamotu Archipelago (French Polynesia)

Despite the rapid rate of human-induced species losses, the relative influence of natural and anthropogenic factors on the functional diversity of species assemblages remains unknown for most ecosystems. A model was previously developed to predict the diversity structure of coral reef fish assemblages in 10 atolls of low human pressure and contrasting morphology of the Tuamotu Archipelago (French Polynesia). This existing model predicted smoothed histograms (spectra) of species richness according to size classes, diet classes and life-history classes of fish assemblages using a combination of environmental characteristics at different spatial scales. The present study applied the model to Tikehau, another atoll of the same archipelago where commercial fishing is practiced and where the same sampling strategy was reproduced. Significant differences appeared between predicted and observed species richness in several size, diet and life-history classes of fish assemblages in Tikehau. Two parameters which were not accounted for in the initial model, i.e. fishing pressure and atoll position within the archipelago, explained together 63% of variance in model residuals, >60% being explained by fishing pressure only. The respective effects of fishing and atoll position on the diversity of coral reef fish assemblages are discussed, with the potential of such modelling approach to assess the relative importance of factors affecting functional diversity within communities.     

Deep-sea harpacticoid copepod diversity maintenance: The role of polychaetes

Several models to account for enhanced diversity in the deep sea have been proposed, but the available natural history information has been inadequate to distinguish among them. In particular, few data exist on patterns of co-occurrence among species. At 1220 m depth in the San Diego Trough (32°35.75N; 117°29.00W), harpacticoid copepod species covary significantly with polychaetes when the polychaetes are combined into functional groups on the basis of feeding type and mobility. In particular, harpacticoid species tend to avoid polychaetes which are sessile surface-deposit feeders. The results provide support for models in which disturbance/predation plays an important role in maintaining deep-sea diversity.Contribution No. 15 from Expedition Quagmire.     

Vertical distribution,diurnal and seasonal migration of copepods in Saronic Bay,Greece

The problem of vertical distribution and the movements of copepods was studied from several plankton samples collected by vertical hauls in the Saronic Bay, Greece during two cruises (8 to 17 August and 21 November to 1 December, 1969). The species, whose vertical movements were analyzed, were divided into 3 groups: (1) Those which perform diurnal vertical migration (generally psychrophilic species found in summer samples in deeper layers and in reduced numbers). In autumn, the number of specimens is generally increased and many individuals reach the surface at night. From surface hauls it is known that these species abound in night surface hauls during the cold period. (2) Those species which execute a seasonal vertical migration. These, too are, in general, psychrophilic and found in summer in the deep water layers. In autumn, the population of the upper layers increases. From surface hauls it is known that these species abound in day and night surface samples. (3) Copepods which remained at the surface layer in both seasons of our cruises. These species are thermophilic and are absent from surface hauls during the cold period.     

Fish assemblages composition in a natural, then regulated, stream: A quantitative long-term study

This paper tests the hypothesis how effectively fish assemblage composition was shaped by local climate changes and by engineering impact in 1989. This was possible due to the monitoring protocols of the present study, which allowed estimation of the magnitude of anthropogenic changes from changes naturally occurring in nature. Fish were sampled at the end of every growing season (October) for 23 years at five contiguous sites in a stream, before (1979-1988) and after (1989-2001) regulation. In each sample, six successive electrofishing passes were used to calculate the density and mean biomass for assemblage analysis using the Zippin model. During the study, the natural, meandering stream with pools, riffles, and a moderate canopy was modified into a straight stream of uniform width and depth, stripped of all vegetation. The output layer of a self-organizing map (SOM, the artificial neural network algorithm) applied in this study for site similarity analysis was partitioned into six subclusters placed in two main clusters. Subclusters in the upper part of the SOM were occupied chiefly by regulated stream samples and those in the lower part of the SOM by natural stream samples. Subclusters in the middle position, contained both natural (19) and regulated (20) samples in nearly equal proportion. In addition, the SOM contained one subcluster with sites only from the regulated period and another with only natural sites. Differences between subclusters were attributed to differences in climate, with some differences profound. Warming of the local weather, which became most evident in the 1990s, may have resulted in changes in fish assemblages. This is shown in the SOM, in which samples from the 1980s with cold years dominate the bottom of the SOM, whereas those from the 1990s and later are at the top. Subclusters dominated by regulated or natural sites were not always significantly different when the number of species and diversity indices were considered. Clear differences between the regulated and natural samples involved qualitative characteristics and mainly concerned assemblage composition. They were also confirmed by significant IndVal values (indicator species) and neither mixed subcluster contained important species in their assemblages.