Modeling compensated root water and nutrient uptake

Plant root water and nutrient uptake is one of the most important processes in subsurface unsaturated flow and transport modeling, as root uptake controls actual plant evapotranspiration, water recharge and nutrient leaching to the groundwater, and exerts a major influence on predictions of global climate models. In general, unsaturated models describe root uptake relatively simple. For example, root water uptake is mostly uncompensated and nutrient uptake is simulated assuming that all uptake is passive, through the water uptake pathway only. We present a new compensated root water and nutrient uptake model, implemented in HYDRUS. The so-called root adaptability factor represents a threshold value above which reduced root water or nutrient uptake in water- or nutrient-stressed parts of the root zone is fully compensated for by increased uptake in other soil regions that are less stressed. Using a critical value of the water stress index, water uptake compensation is proportional to the water stress response function. Total root nutrient uptake is determined from the total of active and passive nutrient uptake. The partitioning between passive and active uptake is controlled by the a priori defined concentration value c_max. Passive nutrient uptake is simulated by multiplying root water uptake with the dissolved nutrient concentration, for soil solution concentration values below c_max. Passive nutrient uptake is thus zero when c_max is equal to zero. As the active nutrient uptake is obtained from the difference between plant nutrient demand and passive nutrient uptake (using Michaelis–Menten kinetics), the presented model thus implies that reduced passive nutrient uptake is compensated for by active nutrient uptake. In addition, the proposed root uptake model includes compensation for active nutrient uptake, in a similar way as used for root water uptake. The proposed root water and nutrient uptake model is demonstrated by several hypothetical examples, for plants supplied by water due to capillary rise from groundwater and surface drip irrigation.     

Geochemical and microbial effects on the mobilization of arsenic in mine tailing soils

Arsenic (As) contamination has become a serious environmental problem in many countries. We have performed batch-type leaching experiments on mine tailing soils collected from three abandoned mine areas in South Korea with the objective of evaluating the effect of indigenous bacterial activity on As mobilization. The analysis of physicochemical properties and mineralogical compositions of the samples indicated that the secondary minerals or phases formed as a result of the oxidation or alteration of primary minerals were associated with the labile and bioleachable fractions of As. Compared to simulated abiotic processes using sterilization, the indigenous bacteria activated using a carbon source were able to enhance the dissolution of As under both aerobic and anaerobic conditions. The bacterial dissolution of iron (Fe) and manganese (Mn) was found to occur simultaneously with the dissolution of As, suggesting that the main bacterial mechanism was via the dissimilatory reduction of Fe(III), Mn(IV), and As(V). An anaerobic environment was more favorable for the prominent dissolution of As in the tailing soils. These results indicate that the mobilization of As can be enhanced in the oxygen-depleted part of the tailing dump, particularly with the infiltration of organic substrates. The difference in the degree of As lixiviation between the three tailing soils was found to be related to the bioavailability of As as well as the original biomass in the tailing soils.     

Iron oxidation-reduction and its impacts on cadmium bioavailability in paddy soils: a review

Redox conditions in paddy soils may vary as they are submerged and drained during rice growth. This change may bring about reductive dissolution of iron (Fe) oxides and subsequent formation of secondary Fe-bearing minerals in rice paddies. The mobility and bioavailability of metal contaminants such as cadmium (Cd) in paddy soils are closely related to the chemical behaviors of Fe. Therefore, in this paper, advances in the study of paddy Fe redox transformations and their effects on Cd availability to rice are briefly reviewed. Current concepts presented in this review include the forms of Fe in paddy soils, the reactions involved in Fe oxidation-reduction, chemical factors affecting Fe redox processes, Cd availability to rice and the impacts of Fe transformation on Cd uptake and translocation in rice. Prospects for future research in this area are also discussed.     

Assessing the effect of long-term crop cultivation on distribution of Cd in the root zone

Trace elements such as cadmium (Cd) may be inadvertently added to cropland soils through application of fertilizers, irrigation water, and other amendments. These toxic trace elements pose a potentially threat to soil quality and, through the food chain transfer, to human health. A generalized soil trace element mass balance model that accounts for the interactive processes governing the reactions of trace elements in soils, and consequently removed with crop harvest and leaching out of the soil profile with irrigation water was developed in this research. The model conceptually approximates the mechanisms and kinetics of a real field cropland system. The model was used to evaluate the long-term cultivation on distribution of Cd in California croplands. Under typical California cropping practices, Cd added into the soils accumulated primarily in the plow layer while the Cd content below the plow layer was barely affected. After 100 years of continuous cultivation, the soil Cd content of the plow layer increases from the background level 0.22 mg kg⁻¹ to 0.40 mg kg⁻¹. The accumulation of Cd in the plow layer is in proportion to the external inputs and is affected by the soil and plant characteristics, and management practices. The model can be used to evaluate the environmental fates of other toxic element in soils with case specific parameters.     

Modeling forest floor contribution to phosphorus supply to maritime pine seedlings in two-layered forest soils

The quantitative contribution of the forest floor to P nutrition of maritime pine seedlings was experimentally determined by Jonard et al. (2009) in a greenhouse experiment using the radio-isotopic labeling. To extend the results of the experiment on a known mineral soil, a modeling approach was developed to predict P uptake of maritime pine seedlings growing in a mineral soil covered with a forest floor layer. The classical nutrient uptake model based on the diffusion/mass-flow theory was extended to take into account mineralization of P in dead organic matter, microbial P immobilization and re-mineralization and P leaching. In addition, the buffer power characterizing the P retention properties of the mineral soil was allowed to vary with time and with the P-ion concentration in solution. To account for increasing root competition with time, a moving boundary approach was implemented. According to the model, the forest floor contributed most of the P supply to the seedlings (99.3% after 130 days). Predicted P uptake was consistent with observed P uptake and modeling efficiency was 0.97. The uptake model was then used to evaluate the impact of the P retention properties of the mineral soil on the contribution of the forest floor to P uptake. Simulations showed that the contribution of the forest floor was much lower in the quasi non-reactive soil (45.7%) but rapidly increased with soil P reactivity.     

Does low N-mineralisation rate in soils under grass help limit nitrate leaching in summer?

This paper aimed to confirm the hypothesis that rates of ammonification and net mineral-N production in soils under grass in summer are low and this, rather than nitrate uptake by plants, reduces mineral leaching from soils in summer. Six sets of soil samples were collected from under mown grass on the University of York campus in the UK. Samples were taken from two depths in late summer (August) and late autumn (November) to compare seasonal differences in N species transformations when field-moist soils were incubated for a week at ambient outdoor temperatures after prior removal of vegetation. Ammonification and net mineral-N production rates were low in August in spite of warm temperatures. Net mineral-N production rates were also low in November. The results agreed with those of an earlier study in a different year after considering weather differences between years. They support the hypothesis that litter accumulated over autumn/winter will be minimally mineralised and retain N before the temperature rises in spring. The study shows the merit of measuring concentrations of mineral-N species in both fresh soils and soils incubated at ambient outdoor temperatures after removing plant material to eliminate plant N uptake effects. The results suggest that soil C% and N% are more important than soil C:N ratio alone in understanding controls on N transformations.     

From single fine roots to a black alder forest ecosystem: How system behaviour emerges from single component activities

Based on empirical findings in a natural black alder ecosystem in Northern Germany we developed an individual based model that integrates components of a black alder ecosystem interacting on different levels of organisation. The factors determining seasonal fine root biomass development of forest ecosystems are not yet fully understood.We used an object oriented model approach to investigate this complex matter for black alder trees. Processes like growth, storage, respiration, transport, nutrient mineralisation and uptake as well as interactions among these factors are described on the level of functionally differentiated plant organs (fine roots, coarse roots, stem, branches, leaves) and soil units. The object structure of the model is determined by spatial relations between plant modules as well as between plant modules and their local environment modules.As results of model application we found that (i) on the organ level, spatio-temporal plasticity of (root) growth allocation is related to spatio-temporal variation of resource availability, (ii) on the plant level, balanced root:shoot growth appears in response to variation of available resources light and nutrients, (iii) on the population level, tree stand development (population structure, self-thinning) resulted from coexistence and competition between plant individuals.For the understanding of the root compartment it seems relevant that the model implementation of local scale fine root dynamics is consistent with a self-organised large scale spatial heterogeneity of fine root activity pattern. On the other hand, fine-root dynamics cannot be explained as a result of autonomous dynamics. A reference to above-ground processes is a necessary condition and the overall plant seems to act as an integrator providing boundary conditions for local activity pattern. At the same time fine-root characteristics are of some importance for properties on hierarchically higher levels, e.g. co-existence in a tree population or element cycling in the ecosystem.As a conclusion, modelling of the spatio-temporal dynamics of tree root systems appears as a paradigmatic example of scale and organisation level integrating processes.     

Application of various mathematical models to data from the uptake of methyl mercury in bluegill sunfish (Lepomis macrochirus)

Evaluated and compared are the results of various mathematical models to data from the uptake of methyl mercury in bluegill sunfish (Lepomis macrochirus). Data were obtained from the direct uptake of methyl mercury from water in bluegill at 9°C and at a CH₃HgCl concentration of 0.2 ppb. The models considered are: (1) linear uptake relationship; (2) first-order kinetics, one-compartment or single-exponential model; (3) combination of first-order kinetics and the linear uptake relationship, designated as slope-exponential model; (4) two-compartment or double-exponential model; (5) three-compartment model, including a storage compartment for the build up of contaminant, designated as storage model; (6) three-compartment model, allowing two routes of elimination, designated the “Y” model; (7) an empirical uptake relationship having the form of a rectangular hyperbola.A comparison of the nonlinear models showed that the empirical model had fewer convergence problems in obtaining parameter estimates and its parameter values had less variation. The best fit was made by the “Y” model, the empirical model gave one of the smaller values of the residual mean squares, and other nonlinear models had computational convergence difficulties. The lack of computational problems and the comparitively small residual mean squares resulted in the selection of and the preference for the empirical model for use in describing the individual and interactive effects of temperature and methyl mercury concentration on the direct uptake of methyl mercury from water by bluegill.     

Arsenic,antimony and bismuth in soil and pasture herbage in some old metalliferous mining areas in England

Soil and pasture herbage samples from some historical metalliferous mining and smelting areas in England were analysed for As, Sb and Bi by ICP-AES using a hydride generation method after ashing with Mg(NO₃)₂. The results showed that As, Sb and Bi concentrations in soils were elevated because of their associations with the Pb-Zn mineralisation in Derbyshire and Somerset, and Sn-Cu mineralisation in Cornwall. The distribution of As, Sb and Bi in soils reflected the chemical nature of different mine waste materials, and on a regional basis clearly reflected the geochemistry of the three mineral provinces. Historical smelting and calcination have caused intensive contamination in soils in the immediate vicinity of these activities. Antimony was highly elevated in soils at an old Pb smelter site in Derbyshire. Although the concentrations of As, Sb and Bi were generally low in the pasture herbage samples examined, the concentrations of As and Sb in herbage often reflected those of the corresponding soils. Soil pH had a large effect on the plant uptake of Bi from soils. The pasture herbage contaminated by soil can be an important exposure pathway of these elements to livestock grazing on contaminated land.     

Sequestration of As by iron plaque on the roots of three rice (<Emphasis Type="Italic">Oryza sativa</Emphasis> L.) cultivars in a low-P soil with or without P fertilizer

A pot experiment was carried out in a greenhouse to investigate the sequestration of As in iron plaques on root surface of three rice (Oryza sativa L.) cultivars. Phosphate (P) fertilization increased both plant biomass and tissue P concentrations significantly, indicating that the soils used in this study was highly P-deficient. Results from this study confirmed that low P supply improved the formation of iron plaque on rice roots. As a consequence, arsenic (As) concentrations in DCB-extracts with no P addition were significantly higher than those with P fertilization. Arsenic was highly sequestrated in iron plaque; arsenic concentration in iron was up to nearly 120 mg kg⁻¹, while arsenic concentrations in roots were just several mg kg⁻¹. Both arsenic and phosphate concentrations in iron plaque were highly positively correlated with the amounts of iron plaque (DCB-extractable Fe). Contrary to normal understanding that increasing P supply could reduced As accumulation in plants, results from the present study showed that P fertilization did not inhibit the As uptake by plants (As accumulation in aboveground), which was probably due to the fact that iron plaque formation was improved under low P conditions, thus leading to more As sequestration in the iron plaque. Thus results obtained in this study indicated that the iron plaque may inhibit the transfer of As from roots to shoots, and thus alter the P–As interaction in plant As uptake processes.     

Temporal variability in trace metal solubility in a paddy soil not reflected in uptake by rice (<Emphasis Type="Italic">Oryza sativa</Emphasis> L.)

Alternating flooding and drainage conditions have a strong influence on redox chemistry and the solubility of trace metals in paddy soils. However, current knowledge of how the effects of water management on trace metal solubility are linked to trace metal uptake by rice plants over time is still limited. Here, a field-contaminated paddy soil was subjected to two flooding and drainage cycles in a pot experiment with two rice plant cultivars, exhibiting either high or low Cd accumulation characteristics. Flooding led to a strong vertical gradient in the redox potential (Eh). The pH and Mn, Fe, and dissolved organic carbon concentrations increased with decreasing Eh and vice versa. During flooding, trace metal solubility decreased markedly, probably due to sulfide mineral precipitation. Despite its low solubility, the Cd content in rice grains exceeded the food quality standards for both cultivars. Trace metal contents in different rice plant tissues (roots, stem, and leaves) increased at a constant rate during the first flooding and drainage cycle but decreased after reaching a maximum during the second cycle. As such, the high temporal variability in trace metal solubility was not reflected in trace metal uptake by rice plants over time. This might be due to the presence of aerobic conditions and a consequent higher trace metal solubility near the root surface, even during flooding. Trace metal solubility in the rhizosphere should be considered when linking water management to trace metal uptake by rice over time.     

Distributions of heavy metals in the sediments of South Korean harbors

Mechanisms of natural attenuation of arsenic (As) by wetland plants may be classified by plant uptake and adsorption and/or co-precipitation by iron (oxy)hydroxide formed on the root surface of plants or in rhizosediment. A natural Cattail (Typha spp.) wetland impacted by tailings containing high levels of As from the Myungbong abandoned Au Mine, South Korea was selected, and the practical capability of this wetland to attenuate As was evaluated. The As concentrations in the plant tissues from the study wetland were several-fold higher than those from control wetland. SEM-EDX analyses demonstrated that iron plaques exist on the rhizome surface. Moreover, relatively high As contents bonded with hydrous iron oxides were found in the rhizosediments rather than in the bulk sediments. It was revealed through the leaching and sequential extraction analyses that As existed as more stable forms in the wetland sediment compared with adjacent paddy soil, which is also contaminated with As due to input of mine tailings. The As concentration ratios of extracted solution to sediment/soil represented that the wetland sediment showed significant lower values (10-fold) rather than the paddy soil with indicating high As stability. Also, As in the wetland sediment was predominantly bonded with residual phases on the basis of results from sequential extraction analysis. From these results, it is concluded that transformation of As contaminated agricultural field to wetland environment may be helpful for natural attenuation until active remediation action.     

Natural attenuation of arsenic in the wetland system around abandoned mining area

Mechanisms of natural attenuation of arsenic (As) by wetland plants may be classified by plant uptake and adsorption and/or co-precipitation by iron (oxy)hydroxide formed on the root surface of plants or in rhizosediment. A natural Cattail (Typha spp.) wetland impacted by tailings containing high levels of As from the Myungbong abandoned Au Mine, South Korea was selected, and the practical capability of this wetland to attenuate As was evaluated. The As concentrations in the plant tissues from the study wetland were several-fold higher than those from control wetland. SEM-EDX analyses demonstrated that iron plaques exist on the rhizome surface. Moreover, relatively high As contents bonded with hydrous iron oxides were found in the rhizosediments rather than in the bulk sediments. It was revealed through the leaching and sequential extraction analyses that As existed as more stable forms in the wetland sediment compared with adjacent paddy soil, which is also contaminated with As due to input of mine tailings. The As concentration ratios of extracted solution to sediment/soil represented that the wetland sediment showed significant lower values (10-fold) rather than the paddy soil with indicating high As stability. Also, As in the wetland sediment was predominantly bonded with residual phases on the basis of results from sequential extraction analysis. From these results, it is concluded that transformation of As contaminated agricultural field to wetland environment may be helpful for natural attenuation until active remediation action.     

基质诱导硝化测定的土壤中锌的毒性阈值、主控因子及预测模型研究

选取我国有代表性的16种土壤,通过基质诱导硝化(SIN)的方法,研究了淋洗与未淋洗处理后,土壤中外源Zn对不同土壤潜在硝化速率(PNR)的影响。结果表明:在未淋洗处理土壤中Zn毒性的EC50(使PNR降低至对照一半土壤中Zn的浓度)值的范围为197～1874mg·kg-1,相差近9.51倍;总体而言,土壤pH、有机碳及粘粒含量的提高可以降低土壤中Zn的毒性。偏相关分析结果表明,影响土壤中Zn对潜在硝化速率抑制作用的主要因子依次为土壤pH、有机碳含量及粘粒含量;淋洗处理明显提高了土壤中外源Zn的毒性阈值浓度,在不同土壤中,淋洗因子(定义为淋洗后的土壤Zn毒性的EC50与非淋洗EC50的比值)范围为1.16～1.43;基于土壤主要性质的多元回归预测模型结果表明,利用土壤性状(pH、有机碳和粘粒含量)可以很好地预测土壤中Zn对硝化速率抑制的毒性阈值。     

Enhanced Ni phytoextraction by effectiveness of chemical and biological amendments in sunflower plant grown in Ni-polluted soils

A greenhouse study was conducted as a completely randomised design in a factorial arrangement to assess how inoculation of AMF (arbuscular mycorrhizal fungus) and application of EDTA (ethylenediaminetetracetic acid) as biological and chemical amendments can affect the Ni (nickel) phytoremediation in Ni-polluted soils using sunflower plant. The results showed that the inoculation of AMF increased root colonisation while applying EDTA and high level of Ni decreased it. Microbial incubation has a positive effect on both shoot and root dry yields; however, co-application of Ni and EDTA demoted the growth rate. Shoot nutrients uptake of plants decreased as Ni levels increased. In inoculated plants, shoot uptake of Zn, Fe and Mn was higher in all Ni levels than non-inoculated plants. Ni uptake in plant shoots and roots increased with applying both AMF and EDTA. However, the mean Ni concentration and uptake in inoculated plants along with applying EDTA are higher in sunflower shoots than in roots. As Ni levels increased, Ni extraction and uptake efficiencies increased; it can be concluded co-application of EDTA and AMF was effective in increasing phytoextraction potential of sunflower plants in Ni-contaminated sites. This study highlights that AMF could be suitable for cleaning Ni-polluted areas and it could significantly contribute to phytoremediation technology.     

Arsenic uptake by plants and possible phytoremediation applications: a brief overview

This review focuses the behaviour of arsenic in plant?Csoil and plant?Cwater systems, arsenic?Cplant cell interactions, phytoremediation, and biosorption. Arsenate and arsenite uptake by plants varies in different environment conditions. An eco-friendly and low-cost method for arsenic removal from soil?Cwater system is phytoremediation, in which living plants are used to remove arsenic from the environment or to render it less toxic. Several factors such as soil redox conditions, arsenic speciation in soils, and the presence of phosphates play a major role. Translocation factor is the important feature for categorising plants for their remediation ability. Phytoremediation techniques often do not take into account the biosorption processes of living plants and plant litter. In biosorption techniques, contaminants can be removed by a biological substrate, as a sorbent, bacteria, fungi, algae, or vascular plants surfaces based on passive binding of arsenic or other contaminants on cell wall surfaces containing special active functional groups. Evaluation of the current literature suggests that understanding molecular level processes, and kinetic aspects in phytoremediation using advanced analytical techniques are essential for designing phytoremediation technologies with improved, predictable remedial success. Hence, more efforts are needed on addressing the molecular level behaviour of arsenic in plants, kinetics of uptake, and transfer of arsenic in plants with flowing waters, remobilisation through decay, possible methylation, and volatilisation.     

Screening of Cucumis sativus as a new arsenic-accumulating plant and its arsenic accumulation in hydroponic culture

Phytoextraction is a remediation technology with a promising application for removing arsenic (As) from soils and waters. Several plant species were evaluated for their As accumulation capacity in hydroponic culture amended with As. Cucumis sativus (cucumber) displayed the highest tolerance against As among 4 plants tested in this study (corn, wheat, sorghum and cucumber). The germination ratio of Cucumis sativus was more than 50% at the high concentration of 5,000 mg-As/l. In Cucumis sativus grown in a solution contaminated with 25 mg-As/l, the accumulated As concentrations in the shoot and root were 675.5 ± 11.5 and 312.0 ± 163.4 mg/kg, respectively, and the corresponding values of the translocation and bioaccumulation factors for As were 1.9 ± 0.9 and 21.1 ± 8.4, respectively. These results indicate Cucumis sativus is to be a candidate plant for phytoextraction of As from soils and water.     

模拟降水对碱性盐化土壤中镉的淋滤及形态变化的影响

采用人工模拟方式,试验研究了不同pH值的降水对碱性盐化土壤中镉的连续淋滤效果,分析了淋洗后土壤中镉的形态变化特征。结果表明,在不同pH值降水对土壤中镉的淋滤过程中,12h内基本上达到高峰,12h后镉的淋滤量较低,随着时间的延续镉的淋洗量基本保持不变;降水有利于土壤中的镉释放,且pH值越低,镉的释放量越高。土壤盐化对降水淋洗镉的效果有一定影响,氯化物的存在,有利于镉的淋滤,淋滤量增加值在18%～94%之间,随着淋洗液pH值的增加,镉的淋滤量增加幅度减少;与对照组土壤样品相比,淋洗液pH降低利于增大硫酸盐型盐化土壤中镉的淋滤量,当pH值为中性时,镉的淋滤量减少;苏打型盐化土壤镉的淋洗效果与硫酸盐型土壤相似。模拟降水淋洗后,土壤中镉的形态发生明显变化,与淋洗前相比,土壤中镉的可交换态、碳酸盐结合态、有机结合态的质量分数降低,随着淋洗液酸性的增加,降低幅度增大;镉的铁锰氧化态相对质量分数在淋洗后有所增加。     

A model to predict concentration enrichment of contaminants on soil adhering to plants and skin

Transfer of soil contaminants into the food chain has long been a concern. However, certain aspects of the pathways involved have not been fully investigated. One is the enrichment of contaminant concentrations through physical processes such as size-sorting of soil particles. Fine particles selected from soil by processes such as adhesion onto plants will have much higher contaminant concentrations than the original soil. A saturation kinetics model of the process of soil adhesion to leaf surfaces was developed. The model helps identify the parameters that are least-well known and need experimental support. The ratio of clay and sand wash-off half times was especially important. With nominal values for the input parameters, estimated enrichments agreed well with observations to date, and ranged from slightly over unity for medium- and fine-textured soils to about tenfold for sandy soils. With a few reasonable assumptions, the model was generalised to apply to other soil adhesion scenarios such as adhesion to skin. The generalised model can be applied with minimal need for setting-specific information.     

Distribution and vertical migration of polycyclic aromatic hydrocarbons in forest soil pits of southeastern Tibet

PAHs could be transported to Tibetan Plateau in accompany with atmospheric circulation. The forest regions were found be an important sink for PAHs, while their distributions and migrations in forest are still uncertain. In this study, soil profile samples were collected in southeastern Tibet and the concentrations, distributions, and migration of PAHs in forest region were investigated. The PAHs levels in the forest soils were at the low end of remote sites, ranged from 27.4 to 120.3 ng g^?1 on a dry weight based. Due to low ambient temperature and high organic carbon content, enrichment of PAHs was found in higher altitude on north side. According to the soil profiles, the vertical distributions of PAHs in organic layers were mainly influenced by pedogenesis, while the vertical distributions in mineral layers were dominated by downward leaching effect. Enrich factor (EF) of PAHs was estimated, and the values in organic layers were positively correlated with the octanol–air partition coefficients (K _OA), but EFs in mineral layers decreased with the K _OA values. PAHs in the surface soils on the north side of forest were relatively stable, while the migration of PAHs on the south sides and other clearing sites was more active. The leaching rates of PAHs in clearing site ranged between 1.42 and 29.3%. The results from this study are valuable on the characterization of PAHs in Tibetan Plateau.