Modeling the Effects of Potential Salinity Shifts on the Recovery of Striped Bass in the Savannah River Estuary,Georgia–South Carolina,United States

Increased salinity in spawning and nursery grounds in the Savannah River estuary was cited as the primary cause of a 97% decrease in adult striped bass (Morone saxatilis) and a concomitant 96% decrease in striped bass egg production. Restoration efforts focused on environmental remediation and stock enhancement have resulted in restored salinity patterns and increased egg and adult abundances. However, future water needs or harbor development may preclude further recovery by reducing freshwater inflow or increasing salinity intrusion. To assess the effect of potential changes in the salinity regime, we developed models relating discharge, tidal phase, and salinity to striped bass egg and early larval survival and re-cast these in a quantitative Bayesian belief network. The model indicated that a small upstream shift (≤1.67 km) in the salinity regime would have the least impact on striped bass early life history survival, whereas shifts >1.67 km would have progressively larger impacts, with a 8.33-km shift potentially reducing our estimated survival probability by >28%. Such an impact could have cumulative and long-term detrimental effects on the recovery of the Savannah River striped bass population. The available salinity data were collected during average and low flows, so our model represents some typical and some extreme conditions during a striped bass spawning season. Our model is a relatively simplistic, “first-order” attempt at evaluating potential effects of changes in the Savannah River estuarine salinity regime and points to areas of concern and potential future research.     

PHYTOPLANKTON PRODUCTIVITY AND BIOMASS IN THE CHARLOTTE HARBOR ESTUARINE SYSTEM,FLORIDA1

ABSTRACT: Phytoplankton carbon-14 productivity at a depth of 50 percent of surface light and chlorophyll-α concentrations were measured every other month from November 1985 through September 1986 at 12 stations in the Charlotte Harbor estuarine system. Maximum productivity and chlorophyll-α concentrations occurred during summer or early autumn near the mouths of tidal rivers. Most of the variability in light-normalized productivity and chlorophyll-α could be attributed to two factors derived from Principal Component Analysis of ambient water-quality characteristics. One factor related to seasonal variability and the other to spatial variability. The seasonal factor incorporated the interaction of temperature and nutrients. The spatial factor incorporated the interaction of salinity, nutrients, and water color that resulted from the mixing of freshwater inflow and seawater. Although freshwater inflow increased the availability of nutrients in low salinity (less than 10‰) waters, the highly colored freshwater restricted light penetration and phytoplankton productivity. Maximum productivity and biomass occurred where color associated with the freshwater inflow had been diluted by seawater so that light and nutrients were both available. Concentrations of inorganic nitrogen were often at or below detection limit throughout most of the high salinity (greater than 20‰) waters of the estuary and was probably the most critical nutrient in limiting phytoplankton productivity.     

Hydrologic modeling as a predictive basis for ecological restoration of salt marshes

Roads, bridges, causeways, impoundments, and dikes in the coastal zone often restrict tidal flow to salt marsh ecosystems. A dike with tide control structures, located at the mouth of the Herring River salt marsh estuarine system (Wellfleet, Massachusetts) since 1908, has effectively restricted tidal exchange, causing changes in marsh vegetation composition, degraded water quality, and reduced abundance of fish and macroinvertebrate communities. Restoration of this estuary by reintroduction of tidal exchange is a feasible management alternative. However, restoration efforts must proceed with caution as residential dwellings and a golf course are located immediately adjacent to and in places within the tidal wetland. A numerical model was developed to predict tide height levels for numerous alternative openings through the Herring River dike. Given these model predictions and knowledge of elevations of flood-prone areas, it becomes possible to make responsible decisions regarding restoration. Moreover, tidal flooding elevations relative to the wetland surface must be known to predict optimum conditions for ecological recovery. The tide height model has a universal role, as demonstrated by successful application at a nearby salt marsh restoration site in Provincetown, Massachusetts. Salt marsh restoration is a valuable management tool toward maintaining and enhancing coastal zone habitat diversity. The tide height model presented in this paper will enable both scientists and resource professionals to assign a degree of predictability when designing salt marsh restoration programs.     

INVESTIGATION OF TURBIDITY MAXIMUM IN A MESOTIDAL ESTUARY,TAIWAN1

ABSTRACT: To comprehend the distributions of salinity, temperature, and suspended sediment in the Danshuei River estuary in Taiwan, monthly field surveys were conducted in 2003. These included several high and low slackwater surveys and intensive surveys. The results show that the Danshuei River estuary is predominately a partially mixed estuary. The highest concentration of suspended sediment is typically observed at the Chung‐Hsin Bridge, the most upstream sampling station. The suspended sediment concentration exhibits a general decreasing trend in the downstream direction. It may be concluded that the sediments mostly come from the upstream reach. A locally high concentration of suspended sediment is found at the Kuan‐Du station because of the local deep channel bathymetry and two‐layered estuarine circulation. A vertical two‐dimensional hydrodynamic and sediment transport model is applied to investigate the tidally averaged salinity distribution, residual circulation, and suspended sediment concentration. The modeling results reveal that, under the Q₇₅ flow condition (i.e., low flow), a turbidity maximum occurs at the Kuan‐Du station due to the strong estuarine circulation. The model simulation with a much higher river flow condition results in a weaker residual circulation and weaker turbidity maximum.     

Modeling of Escherichia coli Fluxes on a Catchment and the Impact on Coastal Water and Shellfish Quality1

Bougeard, Morgane, Jean‐Claude Le Saux, Nicolas Pérenne, Claire Baffaut, Marc Robin, and Monique Pommepuy, 2011. Modeling of Escherichia coli Fluxes on a Catchment and the Impact on Coastal Water and Shellfish Quality. Journal of the American Water Resources Association (JAWRA) 1‐17. DOI: 10.1111/j.1752‐1688.2011.00520.x Abstract: The simulation of the impact of Escherichia coli loads from watersheds is of great interest for assessing estuarine water quality, especially in areas with shellfish aquaculture or bathing activities. For this purpose, this study investigates a model association based on the Soil and Water Assessment Tool (SWAT) coupled with a hydrodynamic model (MARS 2D; IFREMER). Application was performed on the catchment and estuary of Daoulas area (France). The daily E. coli fluxes simulated by SWAT are taken as an input in the MARS 2D model to calculate E. coli concentrations in estuarine water and shellfish. Model validation is based on comparison of frequencies: a strong relationship was found between calculated and measured E. coli concentrations for river quality (r² = 0.99) and shellfish quality (r² = 0.89). The important influence of agricultural practices and rainfall events on the rapid and large fluctuations in E. coli fluxes from the watershed (reaching three orders of magnitude in <24 hours) is one main result of the study. Response time in terms of seawater quality degradation ranges from one to two days after any important rainfall event (greater than 10 mm/day) and the time for estuary to recover good water quality also mainly depends on the duration of the rainfall. In the estuary, three effects (rainfall, tidal dilution, and manure spreading) have been identified as important influences.     

NUMERICAL MODELING OF SALTWATER INTRUSION IN THE NORTHERN GUAM LENS1

ABSTRACT This paper deals with the application of a two-dimensional, saltwater intrusion model to the aquifer in Northern Guam. The model used finite element theory and the Galerkin, weighted-residual technique as its basis. The Northern Guam lens was discretized into 299 linear, triangular elements and 189 nodes. The model was calibrated using 1978 hydrologic data. The output of the model was compared with measured water levels in six observation wells. The calibrated values of permeability and porosity were then used to verify the model using 1979 data. A calibrated and verified model can be used to make an infinite variety of management and planning studies. In this study, three applications are provided that would be considered typical management runs. Steady state runs were made to compare the four conditions of no pumping, 1978 pumping levels, twice 1978 pumping levels, and five times 1978 pumping levels. The water levels due to these conditions are shown in plan and in cross sections of the aquifer. The effect of zero recharge to the aquifer is next demonstrated for the pumping levels existing during 1978. The final run shows how long the aquifer takes to reach steady state when the pumping rate is increased from the 1978 pumping level to twice that value. The program can be used for numerous other studies for management and planning purposes.     

SEDIMENT TRANSPORT IN A SHALLOW COASTAL ESTUARY DURING THE WINTER SEASON1

ABSTRACT: This project analyzes suspended sediment flux through the upper Barataria basin in Louisiana during the winter season defined from November through April. The Barataria is a shallow coastal estuary located in southeastern Louisiana. The controls exerted by environmental parameters (such as wind or atmospheric pressure) in wetlands‐shallow bay ecosystems on transport of water and sediment were examined. Water samples were taken at a bayou (which serve as the inlet for flow to the estuary) on a regular basis. These samples were analyzed for total suspended solids and volatile suspended solids. Velocity, depth, temperature, salinity, conductivity, and meteorological measurements were all recorded at the time of each sampling. A multi‐parameter field probe was employed to continually monitor turbidity, water level, conductivity, and temperature during frontal events. These data were used in a regression analysis to examine the factors that drive carbon flux in the region. Investigations have determined that synoptic climate and prevailing weather conditions explain much of the variations in water levels, flow circulation patterns, salinity, and suspended sediment. Relatively small amounts of sediment appear to leave the estuary during normal tidal activity, but winter storm fronts result in significant fluxes of sediment in both up‐basin and down‐basin directions.     

Bioluminescent bacteria as indicators of chemical contamination of coastal waters

The ratio of bioluminescent to total bacteria (bioluminescent ratio, BLR) as an indicator of a variety of types of anthropogenic contamination of estuarine ecosystems was evaluated through a series of laboratory and field studies. Laboratory studies indicated that the BLR of natural bacterioplankton communities was proportionally reduced in the presence of a number of contaminants including diesel fuel and saltmarsh sediments co-contaminated with mercury and polychlorinated biphenyls (PCBs). Bioluminescent ratio inhibition was observed after short-term exposure to a contaminant suggesting a physiological rather than a population response of native microbial communities. Simulated eutrophication did not suppress the BLR. Field observations of the BLR were conducted weekly for a 2-yr period in the Skidaway River estuary, Georgia, USA. These observations revealed considerable seasonal variability associated with the BLR. Bioluminescent ratios were highest during the summer (25 +/- 15%), lower in the fall (6 +/- 5%) and spring (3 +/- 2%), and near zero during the winter. Although the BLR was not significantly correlated to salinity at a single site (Skidaway River estuary), the BLR was significantly correlated with salinity when sites within the same estuary system were compared (r2 = 0.93). Variation in BLR was not correlated to standard bacteriological indicators of water quality including total and fecal coliform bacteria. Comparison of the BLR from impacted and pristine estuarine sites during the fall suggested that anthropogenically impacted sites exhibited lower BLR than predicted from salinity versus BLR relationships developed in pristine systems. These observations suggest that the BLR could be used as a simple and reliable initial indicator of chemical contamination of estuarine systems resulting from human activity.     

TRANSPORT AND DISTRIBUTION OF NUTRIENTS IN THE LOXAHATCHEE RIVER ESTUARY,SOUTHEASTERN FLORIDA, 1979–811

ABSTRACT: Concentrations of total nitrogen, total phosphorus, and total organic carbon in the Loxahatchee River estuary decreased with increasing salinity in a manner indicating that mixing and dilution of freshwater by seawater was the primary process controlling the down-stream concentrations of nutrients. Most of the nutrients in the surface freshwater inflows entered the estuary from five major tributaries; however, about 10 percent of the total nitrogen and 32 percent of the total phosphorus were from urban stormwater runoff. The input of nutrients was highly seasonal and storm related. During a 61-day period of above average rainfall that included Tropical Storm Dennis, the major tributaries discharged 2.7 metric tons of total phosphorus, 75 metric tons of total nitrogen, and 1,000 metric tons of organic carbon to the estuary. This period accounted for more than half of the total nutrient load from the major tributaries during the 1981 water year (October 1, 1980, through September 30, 1981). Inorganic phosphorus and nitrogen increased relative to total phosphorus and nitrogen during storm runoff. Nutrient yield from the basin, expressed as grams per square meter of basin area, was relatively low. However, because the basin area (544 square kilometers) is large compared with the volume of the estuary, the basin might be expected to contribute significantly to estuarine enrichment were it not for tidal flushing. Approximately 60 percent of the total volume of the estuary is flushed on each tide. Because the estuary is well flushed, it probably has a large tolerance for nutrient loading.     

EVALUATION OF WATER QUALITY AND MONITORING IN THE ST. LUCIE ESTUARY,FLORIDA1

ABSTRACT: The St. Lucie River and its tributaries form a major estuarine system on the southeast coast of Florida. This system is strongly affected by anthropogenic influences, including controlled releases of freshwater from Lake Okeechobee through the St. Lucie Canal and an extensive artificial drainage and irrigation system in the watershed. In the present study, three years of biweekly water quality monitoring data from the estuary were examined. The major stresses to the system stem from high variability of the salinity, frequent low dissolved oxygen (DO) events, and light limitation due to high levels of humic substances brought into the system with the fresh water. Nutrient levels also are high. Management goals for the system, including improvement of DO and water clarity, will require reduction in quantity and variability of freshwater releases.     

Chaotic Behavior and Pollution Dispersion Characteristics in Engineered Tidal Embayments: A Numerical Investigation1

Abstract: This paper presents a numerical investigation of approaches to enhance the mixing and dispersion processes in tidal areas by effecting changes in the natural estuary system. It compares the impact of various estuary modifications stemming from human intervention to pollutant dispersion and chaotic flow within the estuary including the implications of alteration of the original channel shape, change of the channel bathymetry, and modification of the tidal signal. Our findings indicate that chaotic flow analysis is similar in many regards, but not all, to conventional dispersion analysis. Specifically, we conclude that (1) simplification of the flow regime reduces chaotic flow patterns and tracer particle dispersion, (2) creation of extensively protruding barriers and/or installation of barriers on opposite sides of the main stem of the estuary enhances particle dispersion and chaotic mixing, (3) installation of underwater berms has relatively minor beneficial, but highly localized, effects on chaotic regime and particle dispersion, and (4) increasing the tidal signal amplitude was shown to increase chaotic and dispersion properties of the estuarine system. A parametric study investigating the effect of several geometrical configurations and tidal signals on characteristics of chaotic flows concludes the paper.     

Ecological effects of coastal marsh impoundments: A review

Many coastal resource managers believe estuarine marshes are critically important to estuarine fish and shellfish, not only because of the habitat present for juvenile stages, but also because of the export of detritus and plant nutrients that are consumed in the estuary. Concern has been widely expressed that diking and flooding marshes (impounding) for mosquito control and waterfowl management interferes with these values of marshes. Major changes caused by impoundment include an increase in water level, a decrease in salinity, and a decrease in the exchange of marsh water with estuarine water. Alteration of species composition is dramatic after impoundment. Changes in overall production and transport phenomena, however—and the consequences of these changes— may not be as great in some cases as the concern about these has implied. Although few data are available, a more important concern may be the reduction of access by estuarine fish and shellfish to the abundant foods and cover available in many natural, as well as impounded, marshes. Perhaps even more important is the occasional removal of free access to open water when conditions become unfavorable in impounded marsh that is periodically opened and closed. Collection of comparative data on the estuarine animal use of various configurations of natural and impounded marshes by estuarine animals should lead to improved management of both impounded and unimpounded marshes.     

Simulation of Potential Oyster Density with Variable Freshwater Inflow (1965–2000) to the Caloosahatchee River Estuary, Southwest Florida, USA

Oyster beds are disappearing worldwide through a combination of over-harvesting, diseases, and salinity alterations in the coastal zone. Sensitivity of oysters to variable discharge and salinity is particularly acute in small sub-tropical estuaries subject to regulated freshwater releases. South Florida has sub-tropical estuaries where watershed flood control sometimes results in excessive freshwater inflow to estuaries during the wet season (May–Oct) and reduced discharge and increased salinities in the dry season (Nov–Apr). The potential to reserve freshwater accumulated during the wet season could offer the capacity to regulate freshwater at different temporal scales, thus optimizing salinity conditions for estuarine biota. The goal of this study was to use simulation modeling to explore the effects of freshwater inflows and salinity on adult oyster survival in the Caloosahatchee River Estuary (CRE) in southwest Florida. Water managers derived three different freshwater inflow scenarios for the CRE based on historical and modified watershed attributes for the time period of 1965–2000. Three different salinity time series were generated from the inflow scenarios at each of three sites in the lower CRE and used to conduct nine different oyster simulations. Overall, the predicted densities of adult oysters in the upstream site were 3–4 times greater in seasons that experienced reduced freshwater inflow (e.g., increased salinity) with oyster density in the lower estuary much less influenced by the inflows. Potential storage of freshwater reduced the frequency of extreme flows in the wet season and helped to maintain minimum inflow in the dry season near the estuarine mouth. Analyses of inflows indicated that discharges ranging from 0 to 1,500 cfs could promote favorable salinities of 10–25 in the lower CRE depending on wet versus dry season climatic conditions. This range of inflows is similar to that derived in other studies of the CRE and emphasizes the value of simulation models to help prescribe freshwater releases which benefit estuarine biota.     

Measured concentrations of herbicides and model predictions of atrazine fate in the Patuxent River estuary

The environmental fate of herbicides in estuaries is poorly understood. Estuarine physical transport processes and the episodic nature of herbicide release into surface waters complicate interpretation of water concentration measurements and allocation of sources. Water concentrations of herbicides and two triazine degradation products (CIAT [6-amino-2-chloro-4-isopropylamino-s-triazine] and CEAT [6-amino-2-chloro-4-ethylamino-s-triazine]) were measured in surface water from four sites on 40 d from 4 Apr. through 29 July 19% in the Patuxent River estuary, part of the Chesapeake Bay system. Atrazine (2-chloro-4-ethylamino-6-isopropylamino-1,3,5-triazine) was most persistent and present in the highest concentrations (maximum = 1.29 microg/L). Metolachlor [2-chloro-6'-ethyl-N-(2-methoxy-1-methylethyl)-o-acetoluidide], CIAT, CEAT, and simazine (1-chloro-3,5-bisethylamino-2,4,6-triazine) were frequently detected with maximum concentration values of 0.61, 1.1, 0.76, and 0.49 microg/L, respectively. A physical transport model was used to interpret atrazine concentrations in the context of estuarine water transport, giving estimates of in situ degradation rates and total transport. The estimated half-life of atrazine in the turbid, shallow upper estuary was t(1/2) = 20 d, but was much longer (t(1/2) = 100 d) in the deeper lower estuary. Although most (93%) atrazine entered the estuary upstream via the river, simulations suggested additional inputs directly to the lower estuary. The total atrazine load to the estuary from 5 April to 15 July was 71 kg with 48% loss by degradation and 31% exported to the Chesapeake Bay. Atrazine persistence in the estuary is directly related to river flows into the estuary. Low flows will increase atrazine residence time in the upper estuary and increase degradation losses.     

AQUIFER SALINIZATION IN THE YUN‐LIN COASTAL AREA,TAIWAN1

ABSTRACT: This study analyzes possible causes of shallow ground water salinization in the coastal area of Yun‐Lin. The local hydro‐geologic setting is determined from geological drilling data and sea floor topography. Three possible causes (sea water intrusion, salt water percolation through wells, and infiltration of salty water from fish ponds) are evaluated. Chloride concentration is used as an index to measure ground water salinization. Sea water intrusion is modeled by the advective/dispersive equation, and salt water infiltration from wells and fish ponds is calculated by estimating the amount of water percolated. The determined local hydrogeologic setting suggests that the shallow aquifer may be connected to the sea water, resulting in salt water intrusion as a large amount of shallow ground water is withdrawn. The percent contributions of sea water intrusion, percolation through wells, and infiltration of water from fish ponds, to the salinization of the shallow aquifer at Ko‐Hu in the Yun‐Lin coastal area are approximately 27 percent, less than 1 percent and 73 percent, respectively. The results suggest that the vertical infiltration of salt water from fish ponds is the major cause of shallow ground water salinization in the coastal area of Yun‐Lin.     

EFFECTS OF CLIMATE CHANGE ON WATER RESOURCES IN THE DELAWARE RWER BASIN1

ABSTRACT: The effects of potential climate change on water resources in the Delaware River basin were determined. The study focused on two important water-resource components in the basin: (1) storage in the reservoirs that supply New York City, and (2) the position of the salt front in the Delaware River estuary. Current reservoir operating procedures provide for releases from the New York City reservoirs to maintain the position of the salt front in the estuary downstream from freshwater intakes and ground-water recharge zones in the Philadelphia metropolitan area. A hydrologic model of the basin was developed to simulate changes in New York City reservoir storage and the position of the salt front in the Delaware River estuary given changes in temperature and precipitation. Results of simulations indicated that storage depletion in the New York City reservoirs is a more likely effect of changes in temperature and precipitation than is the upstream movement of the salt front in the Delaware River estuary. In contrast, the results indicated that a rise in sea level would have a greater effect on movement of the salt front than on storage in the New York City reservoirs. The model simulations also projected that, by decreasing current mandated reservoir releases, a balance can be reached wherein the negative effects of climate change on storage in the New York City reservoirs and the position of the salt front in the Delaware River estuary are minimized. Finally, the results indicated that natural variability in climate is of such magnitude that its effects on water resources could overwhelm the effects of long-term trends in precipitation and temperature.     

Water quality and restoration in a coastal subdivision stormwater pond

Stormwater ponds are commonly used in residential and commercial areas to control flooding. The accumulation of urban contaminants in stormwater ponds can lead to a number of water quality problems including high nutrient, chemical contaminant, and bacterial levels. This study examined the interaction between land use and coastal pond water quality in a South Carolina residential subdivision pond. Eutrophic levels of chlorophyll and phosphorus were present in all seasons. Harmful cyanobacterial blooms were prevalent during the summer months. Microcystin toxin and fecal coliform bacteria levels were measured that exceeded health and safety standards. Low concentrations of herbicides (atrazine and 2,4-D) were also detected during summer months. Drainage from the stormwater pond may transport contaminants into the adjacent tidal creek and estuary. A survey of residents within the pond's watershed indicated poor pet waste management and frequent use of fertilizers and pesticides as possible contamination sources. Educational and outreach activities were provided to community members to create an awareness of the water quality conditions in the pond. Pond management strategies were then recommended, and selected mitigation actions were implemented. Water quality problems identified in this study have been observed in other coastal stormwater ponds of varying size and salinity, leading this project to serve as a potential model for coastal stormwater pond management.     

The utilization of brackish water, protecting the quality of the upper fresh water layer in coastal aquifers

Increasing salinity is one of the most significant and widespread forms of groundwater pollution in coastal areas. This paper presents the causes and impacts of saline water intrusion in coastal areas. Various causes of salt water intrusion, and approaches for the determination of its extent and various measures to control the salt water intrusion are described. An aquifer performance test (APT) approach is presented to identify the extent of existing salt water intrusion in the study area located in the southwest coastal region of Gujarat State (India). A resistivity based experimental technique is used to identify the quality of the groundwater available at different depths. A methodology is presented to assess the extent of available fresh and saline groundwater and to find out the limit up to which lower saline groundwater can be withdrawn for industrial purposes without affecting the upper fresh water layer which can be made available for domestic purposes.     

Salt marsh vegetation change in response to tidal restriction

Vegetation change in response to restriction of the normal tidal prism of six Connecticut salt marshes is documented. Tidal flow at the study sites was restricted with tide gates and associated causeways and dikes for purposes of flood protection, mosquito control, and/or salt hay farming. One study site has been under a regime of reduced tidal flow since colonial times, while the duration of restriction at the other sites ranges from less than ten years to several decades. The data indicate that with tidal restriction there is a substantial reduction in soil water salinity, lowering of the water table level, as well as a relative drop in the marsh surface elevation. These factors are considered to favor the establishment and spread ofPhragmites australis (common reed grass) and other less salt-tolerant species, with an attendant loss ofSpartina-dominated marsh. Based on detailed vegetation mapping of the study sites, a generalized scheme is presented to describe the sequence of vegetation change from typicalSpartina- toPhragmites-dominated marshes. The restoration of thesePhragmites systems is feasible following the reintroduction of tidal flow. At several sites dominated byPhragmites, tidal flow was reintroduced after two decades of continuous restriction, resulting in a marked reduction inPhragmites height and the reestablishment of typical salt marsh vegetation along creekbanks. It is suggested that large-scale restoration efforts be initiated in order that these degraded systems once again assume their roles within the salt marsh-estuarine ecosystem.     

CHARACTERISTICS OF LONG‐TERM FRESHWATER TRANSPORT IN APALACHICOLA BAY1

ABSTRACT: Long‐term freshwater transport is an important factor affecting estuarine aquatic ecosystems. In this study, a primitive equation, prognostic, three‐dimensional, hydrodynamic model was applied to Apalachicola Bay, Florida, for the summer and fall seasons of 1993. In response to the river freshwater discharge, tide, and wind forces, the model simulations were used to characterize the long‐term freshwater transport processes in the bay. Analysis of spatial distributions of seasonal average salinity and currents shows that the long‐term freshwater transport was strongly affected by the forcing functions of wind and density gradient in the bay. Average freshwater input was approximately the same in the summer and fall seasons of 1993. However, in the summer season, more freshwater moved to the east direction due to the predominant wind from the west, while in the fall season more freshwater moved to the west in response to the wind primarily from the east. The water column was strongly stratified near the river mouth, and it gradually changed to well mixing near the ocean boundaries. Vertical stratification in the bay changed due to wind‐induced mixing and mass transport. Due to the density gradient effect, surface residual currents carrying fresher water were in the direction from the river toward the Gulf, while the bottom residual currents with saltier water entered the bay from the Gulf of Mexico.