Temporal Analysis of Genetic Structure to Assess Population Dynamics of Reintroduced Swift Foxes

Reintroductions are increasingly used to reestablish species, but a paucity of long‐term postrelease monitoring has limited understanding of whether and when viable populations subsequently persist. We conducted temporal genetic analyses of reintroduced populations of swift foxes (Vulpes velox) in Canada (Alberta and Saskatchewan) and the United States (Montana). We used samples collected 4 years apart, 17 years from the initiation of the reintroduction, and 3 years after the conclusion of releases. To assess program success, we genotyped 304 hair samples, subsampled from the known range in 2000 and 2001, and 2005 and 2006, at 7 microsatellite loci. We compared diversity, effective population size, and genetic connectivity over time in each population. Diversity remained stable over time and there was evidence of increasing effective population size. We determined population structure in both periods after correcting for differences in sample sizes. The geographic distribution of these populations roughly corresponded with the original release locations, which suggests the release sites had residual effects on the population structure. However, given that both reintroduction sites had similar source populations, habitat fragmentation, due to cropland, may be associated with the population structure we found. Although our results indicate growing, stable populations, future connectivity analyses are warranted to ensure both populations are not subject to negative small‐population effects. Our results demonstrate the importance of multiple sampling years to fully capture population dynamics of reintroduced populations. Análisis Temporal de la Estructura Genética para Evaluar la Dinámica Poblacional de Zorros (Vulpes velox) Reintroducidos     

The Challenge and Opportunity of Recovering Wolf Populations

The gray wolf once inhabited a wide variety of habitats throughout most of the northern hemisphere north of 20°N latitude. Because the animal preyed on livestock and competed with humans for wild prey, it was extirpated from much of its range outside of wilderness areas. Environmental awareness in the late 1960s brought for the wolf legal protection, increased research, and favorable media coverage. The species has increased in both Europe and North America, is beginning to reoccupy semiwilderness and agricultural land, and is causing increased damage to livestock. Because of the wolf's high reproductive rate and long dispersal tendencies, the animal can recolonize many more areas. In most such areas control will be necessary, but the same public sentiments that promoted wolf recovery reject control. If wolf advocates could accept control by the public rather than by the government, wolves could live in far more places. Insistence on government control discourages some officials and government agencies from promoting recovery. The use of large- or small-scale zoning for wolf management may help resolve the issue. Public education is probably the most effective way to minimize the problem and maximize wolf recovery, but the effort must begin immediately.     

Role of Genetic Background in the Success of Reintroduced Peregrine Falcons

Abstract: Peregrine Falcons (    Falco peregrinus ) of seven subspecies from four continents were bred in captivity, and approximately 1173 of their progeny were released in the midwestern United States and adjacent regions of Ontario and Manitoba in an attempt to replace the original population that was extirpated by chlorinated hydrocarbon poisoning in the 1950s. We analyzed the success of individuals of the different subspecies introduced to the Midwest. Five of the seven subspecies released have contributed to the current breeding population. Subspecies of breeding Peregrine Falcons were equally represented when breeding birds of high productivity were compared with less prolific breeders. The subspecific makeup of the breeding population did not differ significantly from that of the released population, suggesting that adaptability in this species was sufficient to override genetic differences between subspecies. Peregrines of widely different genetic stocks have thrived after release, making substantial genetic contributions to the new population.     

缢蛏6个群体遗传结构的ISSR分析

采用ISSR分子标记对采自福建宁德(ND)、浙江台州(TZ)、上海崇明(CM)、山东海阳(HY)、天津汉沽(HG)和辽宁庄河(ZH)的缢蛏6个野生群体进行遗传多样性和遗传关系分析.筛选出10条ISSR引物对6个群体共216个样品进行扩增,共得到138个清晰的扩增位点,其中多态性位点135个,多态位点百分率为97.83%,在物种水平上的遗传多样性较为丰富.群体遗传多样性分析结果表明,6个群体的多态位点百分率在61.59%～72.46%之间,基因多样性指数和Shannon's信息指数分别在0.104 3～0.176 6和0.178 9～0.280 8之间,其中ND群体的多样性指数最低.群体间遗传分化、遗传距离和聚类结构显示,ND群体和TZ群体亲缘关系最近,首先聚为一支,之后依次与CM群体及HG群体和HY群体聚类,最后与ZH群体聚在一起,表明地理位置较远的群体,遗传距离也较远.     

Inbreeding and Loss of Genetic Variation in a Reintroduced Population of Mauritius Kestrel

Abstract:  Many populations have recovered from severe bottlenecks either naturally or through intensive conservation management. In the past, however, few conservation programs have monitored the genetic health of recovering populations. We conducted a conservation genetic assessment of a small, reintroduced population of Mauritius Kestrel ( Falco punctatus ) to determine whether genetic deterioration has occurred since its reintroduction. We used pedigree analysis that partially accounted for individuals of unknown origin to document that (1) inbreeding occurred frequently (2.6% increase per generation; N _eI= 18.9), (2) 25% of breeding pairs were composed of either closely or moderately related individuals, (3) genetic diversity has been lost from the population (1.6% loss per generation; N _eV= 32.1) less rapidly than the corresponding increase in inbreeding, and (4) ignoring the contribution of unknown individuals to a pedigree will bias the metrics derived from that pedigree, ultimately obscuring the prevailing genetic dynamics. The rates of inbreeding and loss of genetic variation in the subpopulation of Mauritius Kestrel we examined were extreme and among the highest yet documented in a wild vertebrate population. Thus, genetic deterioration may affect this population's long-term viability. Remedial conservation strategies are needed to reduce the impact of inbreeding and loss of genetic variation in this species. We suggest that schemes to monitor genetic variation after reintroduction should be an integral component of endangered species recovery programs.     

Sex-biased maternal expenditure in Rocky Mountain bighorn sheep

Summary We examined maternal energy expenditure in Rocky Mountain bighorn sheep to test the hypothesis (Trivers and Willard 1973) that individual sons in polygynous mammals should obtain a larger maternal subsidy. In accord with theory, males weighed more at birth (an index of relative prenatal expenditure), tended to suckle more between 40 and 100 days of age (an index of relative postnatal expenditure) and imposed greater delays on their mothers' return to estrus in the subsequent breeding season (an index of relative total preweaning expenditure). Mothers rather than offspring appeared to have primary control over postnatal expenditure. The effect of maternal reproductive effort on return to estrus was cumulative over a period of 3–5 years so that ewes making relatively large expenditures gave birth progressively later. Ewe and lamb mortality was associated with late conception in the previous rut. Thus, differential reproductive effort by ewes in this population appeared to entail a fitness cost involving reductions in both offspring and maternal survivorship. Correspondence to: J.T. Hogg at the present address     

The Genetic Diversity of Native, Stocked, and Hybrid Populations of Brook Trout in the Southern Appalachians

Using mitochondrial DNA (mtDNA) restriction analysis and starch-gel electrophoresis of the CK-A2 locus product, we examined genetic variation in 311 brook trout (Salvelinus fontinalis) from 11 native, 5 hatchery-derived, and 8 hybrid populations in the southern Appalachian Mountains. Native southern Appalachian fish were genetically distinct from hatchery-derived fish. Southern and hatchery-derived fish were reliably distinguished based on three mtDNA restriction sites. Native southern haplotypes differed from hatchery-derived haplotypes by an average of 0.84%. Northern hatchery-derived haplotypes varied little in mtDNA compared to native southern haplotypes. Introgression of mtDNA haplotypes and the CK-A2 locus varied among populations, and introgression of allozyme and mtDNA markers was positively correlated. Continued introductions of nonnative strains of brook trout in the southern Appalachians could simplify the genetic structure of native brook trout populations and eliminate unique genotypes.     

Genetic Structure of Fragmented Populations of the Endangered Daisy Rutidosis leptorrhynchoides

Abstract: The endangered grassland daisy Rutidosis leptorrhynchoides has been subject to severe habitat destruction and fragmentation over the past century. Using allozyme markers, we examined the genetic diversity and structure of 16 fragmented populations. The species had high genetic variation compared to other plant species, and both polymorphism and allelic richness showed strong positive relationships with log reproductive population size, reflecting a loss of rare alleles (frequency of q < 0.1) in smaller populations. Fixation coefficients were positively related to size, due either to a lack of rare homozygotes in small populations or to Wahlund effects (owing to spatial genetic structure) in large ones. Neither gene diversity nor heterozygosity was related to population size, and other population parameters such as density, spatial contagion, and isolation had no apparent effect on genetic variation. Genetic divergence among populations was low , despite a large north-to-south break in the species' current distribution. To preserve maximum genetic variation, conservation strategies should aim to maintain the five populations larger than 5000 reproductive plants, all of which occur in the north of the range, as well as the largest southern population of 626 plants at Truganina. Only one of these is currently under formal protection. High heterozygosity in smaller populations suggests that they are unlikely to be suffering from inbreeding depression and so are also valuable for conservation. Erosion of allelic richness at self-incompatibility loci, however, may limit the reproductive capacity of populations numbering less than 20 flowering plants.     

Correlations between Human Collecting and Intertidal Mollusc Populations on Rocky Shores

We tested whether the population structures of intertidal molluscs varied with the activity of human collectors in northern Port Phillip Bay, Victora, Australia. We examined eight sites, two of which had been protected for around 70 years by the area being used as a rifle range with the other six being visited frequently by human. The shores were examined in two different years, and in 1991 we counted humans and recorded their activities. At heavily visited shores, almost half of the people seen were simply walking, while 25% were actively collecting, despite regulations prohibiting the collection of intertidal gastritis. The remaining people were fishing or skydiving. At the protected shores, we observed only one collector and a handful of walkers over more than 20 observation periods, including weekdays, normal weekends, and holiday weekends. In 1989 and 1991, we compared size distributions of seven intertidal species between sites in the two categories. Four mollify species are taken for food and bait; the remaining three served as “controls”. The size distributions and abundance of noncarbonated species (alicized napalm, Leaderless viola, and emization ebonies) did not differ between visited and protected sites in either year, although most species did vary between individual sites. In contrast, three of the four collected species, alicize trampoliners, Austrocochlea constricta, and Nerita atramentosa, were significantly larger at the protected sites, and N. atramentosa was markedly less abundant at heavily visited sites. The fourth collected species, Turbo undulatus, has a distribution extending into the subtidal zone, and it is possible that intertidal populations ate replenished from deeper water. The changes in mean size of molluscs are well within the range reported from South America and South Africa under subsistence fishing, and they demonstrate that at least close to major urban centers, human recreational activities can have substantial effects in developed countries.     

Genetic Structure of Endangered Clapper Rail (Rallus longirostris) Populations in Southern California

We assessed the genetic structure of two subspecies of endangered Clapper Rails ( Rallus longirostris ) in Southern California using DNA fingerprinting to uncover variation in minisatellite DNA. Minisatellite DNA variation in the Salton Sea population of the R. l. yumanensis subspecies was at a level typical of outbred avian species (average proportion of fragments shared, or S, was 0.33). Variation was extremely low (S from 0.63 to 0.77), however, within four coastal, salt-marsh populations of the subspecies R. l. levipes located along a transect extending about 260 km northwest from the Mexican border. Between-population similarity (S_ij) was also high for the four levipes populations, although individuals of the small, isolated population at Mugu Lagoon consistently clustered separately in phenograms constructed using neighbor-joining or other algorithms. Individuals of yumanensis always clustered as a sister group to all levipes individuals. The minisatellite data were contrasted with the extremely low mtDNA and RAPD variation we found in both subspecies. We propose that variation in these less-mutable markers was lost in a bottleneck that occurred at least 1000 years ago, thus allowing sufficient time for recovery of variation in the rapidly mutating (μ≈} 0.001/gamete/generation) minisatellites (t = 1/μ, or 1000 generations). A second, more-recent bottleneck, or series of bottlenecks within a metapopulation structure, likely resulted in the depauparate variation seen in levipes today. We suggest that translocations from large to small levipes populations could restore important genetic variation to the small populations and would not compromise genetic boundaries.     

Copulatory tactics in relation to sperm competition in Rocky Mountain bighorn sheep

Summary Sperm competition arises in the bighorn mating system because receptive ewes are some-times defended and mated in sequence by a series of increasingly dominant rams and because subordinate (coursing) rams commonly succeed in forcing matings with defended ewes. To identify potential components in a male strategy of sperm competition, the social circumstances and schedule of copulation among free-ranging bighorns were investigated. Three such components emerged: (i) Defending and coursing rams copulated with estrous ewes at extraordinarily high rates, presumably to increase the proportion of their own versus rivals' sperm present at fertilization by simple numerical preponderance at insemination. (ii) Coursing but not defending rams concentrated copulations later in the period of estrus (sensu this study). Evidence from domestic sheep suggests that this may correspond to the period of maximum female fertility. A greater risk and/or reduced benefit associated with forced versus cooperative copulation may force coursing rams to restrict copulation to periods of highest fertility, whereas defending rams may gain even from copulations outside this period. (iii) Defending rams copulated at unusually high rates immediately after bouts of successful coursing. Such retaliatory copulations were associated with reduced amounts of courtship and were more likely to occur if the defending ram had copulated infrequently recently. The number of retaliatory copulations was independent of the number of preceding forced copulations, probably because defending rams rationed ejaculates in anticipation of future coursing. The function of retaliation is not clear, although the literature on domestic sheep suggests the possibility of some form of mechanical displacement of rival sperm. Unlike females of many ungulate species, bighorn ewes were typically receptive to cooperative copulation over a period of days. Although persistent courtship by defending rams may coerce such extended receptivity, it is also possible that ewes, facing unavoidable forced matings by coursing rams, gain genotypic benefits for offspring by providing prolonged copulatory access to relatively dominant defending rams.     

Genetic Conservation in Feral Populations of Livestock

El ganado asilvestrado puede ser fuente de variación genética con un potencial valor comercial, cientifico, histórico o estético. Variaciones importantes pueden incluír caracteristicas primitivas ausentes en razas modemus y en adaptaciones nuevas o raras. La presencia de de estas variaciones puede ser señalada directamente por marcadores morfológicos, rasgos cuantitativos, caracteristicas adaptativas, o por alelos raros o únicos e, indirectamente por la amplitud y duración de aislamiento, tamaño de la población ancestral, linaje o condiciones ambientales Evidencias directas e indirectas indican características potencialmente valiosas en una población de ovejas asilvestradas en la Isla de Santa Cruz, California Recientemente, 18 ovejas fueron capturadas para iniciar una población en el continente. Discutimos varios objetivos genéticos que son importantes, para mantener unu población asilvestrada, pero advertimos que tales objetivos no deben ser conflictivos con la preservación de la diversidad natural amenazada por ganado asilvestrado.     

喀斯特高原山区土地潜在石漠化与地形因子的关系

选取位于贵州省普定县的后寨地下河流域中下游作为研究区,利用地理信息系统软件,解译出研究区2004年的潜在石漠化等级分布图,对海拔、坡度、坡向和坡位等地形因子同各等级潜在石漠化景观面积的相关关系进行定量分析。结果显示,研究区潜在石漠化景观在空间上呈不均匀分布;海拔、坡度和坡向等地形因子同潜在石漠化景观的多个等级斑块面积之间相关性显著(P<0.05或P<0.01);随着海拔的增加,低度和中度潜在石漠化面积所占比例逐渐增加,无石漠化和极低度潜在石漠化面积所占比例逐渐减少;随坡度的增加,无石漠化面积所占比例逐渐减少,低度、中度及极高度潜在石漠化面积所占比例逐渐增加;随着坡向由阴转阳,中度和高度潜在石漠化面积所占比例逐渐增加;而坡位与各等级潜在石漠化景观面积之间无显著相关性。     

Land use change and nitrogen enrichment of a Rocky Mountain watershed.

Headwater ecosystems may have a limited threshold for retaining and removing nutrients delivered by certain types of land use. Nitrogen enrichment was studied in a Rocky Mountain watershed undergoing rapid expansion of population and residential development. Study sites were located along a 30-km transect from the headwaters of the Blue River to Lake Dillon, a major source of drinking water for Denver, Colorado. Ground water in residential areas with septic systems showed high concentrations of nitrate-N (4.96 +/- 1.22 mg/L, mean +/- SE), and approximately 40% of wells contained nitrate with delta15N values in the range of wastewater. Concentrations of dissolved inorganic nitrogen (DIN) in tributaries with residential development peaked during spring snowmelt as concentrations of DIN declined to below detection limits in undeveloped tributaries. Annual export of dissolved organic nitrogen (DON) was considerably lower in residential streams, suggesting a change in forms of N with development. The seasonal delta15N of algae in residential streams was intermediate between baseline values from undeveloped streams and stream algae grown on wastewater. Between 19% and 23% of the annual N export from developed tributaries was derived from septic systems, as estimated from the delta15N of algae. This range was similar to the amount of N export above background determined independently from mass-balance estimates. From a watershed perspective, total loading of N to the Blue River catchment from septic and municipal wastewater (2 kg x ha(-1) x yr(-1)) is currently less than the amount from background atmospheric sources (3 kg x ha(-1) x yr(-1)). Nonetheless, nitrate-N concentrations exceeded limits for safe drinking water in some groundwater wells (10 mg/L), residential streams showed elevated seasonal patterns of nitrate-N concentration and ratios of DIN to total dissolved phosphorus, and seasonal minimum concentrations of nitrate-N in Lake Dillon have increased exponentially to 80 microg/L over the last decade from an initial value near zero. Results suggest that isotopic ratios in autotrophs can be used to detect and quantify increases in N enrichment associated with land use change. The biotic capacity of headwater ecosystems to assimilate increases in inorganic N from residential development may be insufficient to prevent nitrogen enrichment over considerable distances and multiple aquatic ecosystems downstream.     

Strategic Rat Control for Restoring Populations of Native Species in Forest Fragments

Forest fragments have biodiversity value that may be enhanced through management such as control of non‐native predators. However, such efforts may be ineffective, and research is needed to ensure that predator control is done strategically. We used Bayesian hierarchical modeling to estimate fragment‐specific effects of experimental rat control on a native species targeted for recovery in a New Zealand pastoral landscape. The experiment was a modified BACI (before‐after‐control‐impact) design conducted over 6 years in 19 forest fragments with low‐density subpopulations of North Island Robins (Petroica longipes). The aim was to identify individual fragments that not only showed clear benefits of rat control, but also would have a high probability of subpopulation growth even if they were the only fragment managed. We collected data on fecundity, adult and juvenile survival, and juvenile emigration, and modeled the data in an integrated framework to estimate the expected annual growth rate (λ) of each subpopulation with and without rat control. Without emigration, subpopulation growth was estimated as marginal (λ = 0.95–1.05) or negative (λ = 0.74–0.90) without rat control, but it was estimated as positive in all fragments (λ = 1.4–2.1) if rats were controlled. This reflected a 150% average increase in fecundity and 45% average increase in adult female survival. The probability of a juvenile remaining in its natal fragment was 0.37 on average, but varied with fragment connectivity. With juvenile emigration added, 6 fragments were estimated to have a high (>0.8) probability of being self‐sustaining (λ > 1) with rat control. The key factors affecting subpopulation growth rates under rat control were low connectivity and stock fencing because these factors were associated with lower juvenile emigration and higher fecundity, respectively. However, there was also substantial random variation in adult survival among fragments, illustrating the importance of hierarchical modeling for fragmentation studies. Control Estratégico de Ratas para Restaurar Poblaciones de Especies Nativas en Fragmentos de Bosque     

Patterns of Genetic Diversity and Its Loss in Mammalian Populations

Abstract:  Policy aimed at conserving biodiversity has focused on species diversity. Loss of genetic diversity, however, can affect population persistence, evolutionary potential, and individual fitness. Although mammals are a well-studied taxonomic group, a comprehensive assessment of mammalian genetic diversity based on modern molecular markers is lacking. We examined published microsatellite data from populations of 108 mammalian species to evaluate background patterns of genetic variability across taxa and body masses. We tested for loss of genetic diversity at the population level by asking whether populations that experienced demographic threats exhibited lower levels of genetic diversity. We also evaluated the effect of ascertainment bias (a reduction in variability when microsatellite primers are transferred across species) on our assessment of genetic diversity. Heterozygosity did not vary with body mass across species ranging in size from shrews to whales. Differences across taxonomic groupings were noted at the highest level, between populations of marsupial and placental mammals. We documented consistently lower heterozygosity, however, in populations that had experienced demographic threats across a wide range of mammalian species. We also documented a significant ( p = 0.01) reduction in heterozygosity as a result of ascertainment bias. Our results suggest that populations of both rare and common mammals are currently losing genetic diversity and that conservation efforts focused above the population level may fail to protect the breadth of persisting genetic diversity. Conservation policy makers may need to focus their efforts below the species level to stem further losses of genetic resources.     

Genetic Variation of Naturally Colonizing Wolves in the Central Rocky Mountains

Recovery of gray wolf ( Canis lupus ) populations in North America depends on minimizing human-caused mortality and enhancing migration from stable source populations to suitable habitat unoccupied by wolves. We used a combination of field observation and DNA microsatellite genotyping to examine natural wolf colonization of Glacier National Park, Montana, and surrounding lands. We found high genetic variation in the colonizing population, showing that these packs were founded by multiple, unrelated wolves from Canada. High dispersal rates, long dispersal distances, and lack of a founding population bottleneck indicate that wolves in the United States and Canada should be viewed and managed as a single population. Restoration in the United States by artificial transplants from Alberta to Yellowstone National Park and central Idaho began in 1995. The transplanted wolves will likely aid demographic recovery, but permanently retaining the high genetic variation of wolves in the United States will require assuring gene flow throughout the central Rocky Mountains.