Numerical simulations of the effect of building configurations and wind direction on fine particulate matters dispersion in a street canyon

To explore the effect of traffic emissions on air quality within street canyon, the wind flow and pollutant dispersion distribution in urban street canyons of different H/W, building gap and wind direction are studied and discussed by 3D computational fluid dynamics simulations. The largest PM_2.5 concentrations are 46.4, 37.5, 28.4 µg/m³ when x = ? 88, ? 19.3, ? 19.3 m in 1.5 m above the ground level and the ratio of H/W is 1:1, 1:2 and 2:1, respectively. The flow around the top of the building and clearance flow between the buildings in street canyon influence by different H/W, which affected the diffusion of fine particulate matters. The largest PM_2.5 concentrations are 88.1, 31.6 and 33.7 µg/m³ when x = 148.0, ? 92.3 and ? 186.7 m above the ground level of 1.5 m height and the building gap of 0, 20 and 40%, respectively. The air flows are cut by the clearance in the street canyons, and present the segmental characteristics. The largest PM_2.5 concentrations are 10.6, 11.2 and 16.0 µg/m³ when x = 165.3 m, x = 58.0 and 1.5 m above the ground level of 1.5 m height and wind direction of the parallel to the street, perpendicular to the street and southwest, respectively. Modelled PM_2.5 concentrations are basic agreement with measured PM_2.5 concentrations for southwest wind direction. These results can help analyze the difussion of PM_2.5 concentration in street canyons and urban planning.

     

Diet induced differences in carbon isotope fractionation between sirenians and terrestrial ungulates

Carbon isotope differences (Δ¹³C) between bioapatite and diet, collagen and diet, and bioapatite and collagen were calculated for four species of sirenians, Dugong dugon (Müller), Trichechus manatus (Linnaeus), Trichechus inunguis (Natterer), and the extinct Hydrodamalis gigas (Zimmerman). Bone and tooth samples were taken from archived materials collected from populations during the mid eighteenth century (H. gigas), between 1978 and 1984 (T. manatus, T. inunguis), and between 1997 and 1999 (D. dugon). Mean Δ¹³C values were compared with those for terrestrial ungulates, carnivores, and six species of carnivorous marine mammals (cetaceans = 1; pinnipeds = 4; mustelids = 1). Significant differences in mean δ¹³C values among species for all tissue types were detected that separated species or populations foraging on freshwater plants or attached marine macroalgae (δ¹³C values < −6‰; Δ¹³C_{bioapatite–diet} ∼14‰) from those feeding on marine seagrasses (δ¹³C values > −4‰; Δ¹³C_{bioapatite–diet} ∼11‰). Likewise, Δ¹³C_{bioapatite–collagen} values for freshwater and algal-foraging species (∼7‰) were greater than those for seagrass-foraging species (∼5‰). Variation in Δ¹³C values calculated between tissues and between tissues and diet among species may relate to the nutritional composition of a species’ diet and the extent and type of microbial fermentation that occurs during digestion of different types of plants. These results highlight the complications that can arise when making dietary interpretations without having first determined species-specific Δ¹³C_{tissue–diet} values. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Monitoring trihalomethanes in water by differential ultraviolet spectroscopy

Ultraviolet (UV) spectroscopy is a valid surrogate for monitoring the formation of disinfection by-products (DBPs). Sodium thiosulphate is commonly used to remove disinfectant residual. However, it produces interferences with absorbance in the UV region. Relationship between trihalomethane (THM) formation and differential UV absorbance (−ΔA _λ ) was explored in the presence of sodium thiosulphate. Chlorination of two synthetic and five natural waters was carried out. Sodium thiosulphate showed high UV absorption at 254 nm. This effect can be overcome selecting a higher wavelength. Optimum wavelength varied being about 290 nm for fulvic acid and 300 nm for humic acid type natural organic matter. Correlation between THMs formation and −ΔA _λ was linear for all the analysed samples. Regression curves do not pass through zero indicating the existence of a threshold absorbance decreasment. Once it is surpassed THM release begins. Chlorination of surface waters showed that the presence of bromide significantly increases THMs vs. −ΔA _λ slope. Furthermore, slope decreased with the aromaticity–hydrophobicity of organic matter.     

On thermally forced flows in urban street canyons

During sunny days with periods of low synoptic wind, buoyancy forces can play a critical role on the air flow, and thus on the dispersion of pollutants in the built urban environments. Earlier studies provide evidence that when a surface inside an urban street canyon is at a higher temperature than that of local ambient air, buoyancy forces can modify the mechanically-induced circulation within the canyons (i.e., gaps between buildings). The aspect ratio of the urban canyon is a critical factor in the manifestation of the buoyancy parameter. In this paper, computational fluid dynamics simulations are performed on urban street canyons with six different aspect ratios, focusing on the special case where the leeward wall is at a greater temperature than local ambient air. A non-dimensional measure of the influence of buoyancy is used to predict demarcations between the flow regimes. Simulations are performed under a range of buoyancy conditions, including beyond those of previous studies. Observations from a field experiment and a wind tunnel experiment are used to validate the results.     

Behaviour that influences dispersal and connectivity in the small,young larvae of a reef fish

Determining the scale of larval dispersal and population connectivity in demersal fishes is a major challenge in marine ecology. Historically, considerations of larval dispersal have ignored the possible contributions of larval behaviour, but we show here that even young, small larvae have swimming, orientation and vertical positioning capabilities that can strongly influence dispersal outcomes. Using young (11–15 days), relatively poorly developed (8–10 mm), larvae of the pomacentrid damselfish, Amblyglyphidodon curacao (identified using mitochondrial DNA), we studied behaviour relevant to dispersal in the laboratory and sea on windward and leeward sides of Lizard Island, Great Barrier Reef. Behaviour varied little with size over the narrow size range examined. Critical speed was 27.5 ± 1.0 cm s⁻¹ (30.9 BL s⁻¹), and in situ speed was 13.6 ± 0.6 cm s⁻¹. Fastest individuals were 44.6 and 25.0 cm s⁻¹, for critical and in situ speeds, respectively. In situ speed was about 50% of critical speed and equalled mean current speed. Unfed larvae swam 172 ± 29 h at 8–10 cm s⁻¹ (52.0 ± 8.6 km), and lost 25% wet weight over that time. Vertical distribution differed between locations: modal depth was 2.5–5.0 and 10.0–12.5 m at leeward and windward sites, respectively. Over 80% of 71 larvae observed in situ had directional swimming trajectories. Larvae avoided NW bearings, with an overall mean SE swimming direction, regardless of the direction to nearest settlement habitat. Larvae made smaller changes between sequential bearings of swimming direction when swimming SE than in other directions, making it more likely they would continue to swim SE. When swimming NW, 62% of turns were left (more than in other directions), which would quickly result in swimming direction changing away from NW. This demonstrates the larvae knew the direction in which they were swimming and provides insight into how they achieved SE swimming direction. Although the cues used for orientation are unclear, some possibilities seemingly can be eliminated. Thus, A. curacao larvae near Lizard Island, on average swam into the average current at a speed equivalent to it, could do this for many hours, and chose different depths in different locations. These behaviours will strongly influence dispersal, and are similar to behaviour of other settlement-stage pomacentrid larvae that are older and larger.     

Flows across high aspect ratio street canyons: Reynolds number independence revisited

The Reynolds number for flow in a street canyon, Re?=?U_refH/ν (where U_ref is a reference velocity, H the street canyon height, and ν the kinematic viscosity), cannot be matched between reduced-scale experiments and full-scale field measurements. This mismatch is often circumvented by satisfying the Re independence criterion, which states that above a critical Re (Re_c), the flow field remains invariant with Re. Re_c?=?11,000 is often adopted in reduced-scale experiments. In deep street canyons with height-to-width aspect ratio ≥?1.5, reduced-scale experiments have shown two recirculation vortices induced by the mean flows, but full-scale field measurements have observed only one vortex. We investigated this discrepancy by conducting water channel experiments with Re between 10⁴ and 10⁵ at three aspect ratios. The canyons with aspect ratio 1.0 have Re_c?=?11,000, the canyons with aspect ratio 1.5 have Re_c between 31,000 and 58,000, while the canyons with aspect ratio 2.0 have Re_c between 57,000 and 87,000. Therefore, the widely adopted Re_c?=?11,000 is not applicable for canyons with aspect ratio greater than 1.5. Our results also confirm that there is only one vortex in deep canyons at high Re. This single-vortex flow regime could change our fundamental understanding of deep canyons, which are often assumed to exhibit multiple-vortex flow regimes. Applications such as numerical model validation based on the multiple-vortex regime should be revisited. Our experimental data with Re up to 10⁵ could be used to validate numerical models at high Re.     

Vehicle-related ammonia emissions in Hong Kong

Weekly passive sampling of ambient ammonia has been performed at ground or rooftop levels at 12 locations in Hong Kong representing different land use categories. The highest weekly average roadside level of ammonia in Hong Kong was 7.1 μg m⁻³ at a street canyon site. Ambient ammonia concentrations for a rooftop urban-residential site with nearby light traffic were <1 μg m⁻³, being less than at an adjacent road and indoor car-park. Rooftop levels of ammonia showed a significant correlation with nitrogen monoxide concentrations. Honeycomb denuder samplings were also carried out at the rooftop site and the results were consistent with passive sampling. It is concluded that the 0.54 M vehicles in Hong Kong make a considerable contribution to ambient ammonia concentrations, which are otherwise low.     

Feeding of Clausocalanids (Calanoida,Copepoda) on naturally occurring particles in the northern Gulf of Aqaba (Red Sea)

A total of 12 feeding experiments were conducted in the northern Gulf of Aqaba during spring (March/April) and autumn (September/October) 2002 at the Marine Science Station (MSS) in Aqaba. Females of three species of clausocalanids were selected: Clausocalanus farrani, C. furcatus and Ctenocalanus vanus. Natural occurring particle (NOP) larger than 5 μm were investigated as food source. The ambient chlorophyll a concentration at sampling depth (∼70 m) ranged between 0.15 and 1.00 μg chl a l⁻¹ and NOP concentrations ranged between 1.78 and 14.0 × 10³ cells l⁻¹ during the sampling periods. The division of particles into five size classes (5–10, 10–20, 20–50, 50–100 and >100 μm) revealed that most of the particles were found in the size classes below 50 μm (81–98%), while most of the natural occurring carbon (NOC) was concentrated in the size classes larger than 20 μm (70–95%). Ingestion rates were food density dependent rather than size dependent ranging between 0.02 and 1.65 × 10³ NOP ind⁻¹ day⁻¹ and 0.01 and 0.41 μg NOC ind⁻¹ day⁻¹, respectively, equivalent to a body carbon (BC) uptake between 0.4 and 51.8% BC day⁻¹. The share of the size classes to the total ingestion resembled in most cases the size class composition of the natural particle community.     

Oceanographic preferences of Atlantic bluefin tuna, <Emphasis Type="Italic">Thunnus thynnus</Emphasis>, on their Gulf of Mexico breeding grounds

Electronic tagging and remotely sensed oceanographic data were used to determine the oceanographic habitat use and preferences of Atlantic bluefin tuna (Thunnus thynnus L.) exhibiting behaviors associated with breeding in the Gulf of Mexico (GOM). Oceanographic habitats used by 28 Atlantic bluefin tuna exhibiting breeding behavior (259 days) were compared with available habitats in the GOM, using Monte Carlo tests and discrete choice models. Habitat utilization and preference patterns for ten environmental parameters were quantified: bathymetry, bathymetric gradient, SST, SST gradient, surface chlorophyll concentration, surface chlorophyll gradient, sea surface height anomaly, eddy kinetic energy, surface wind speed, and surface current speed. Atlantic bluefin tuna exhibited breeding behavior in the western GOM and the frontal zone of the Loop Current. Breeding areas used by the bluefin tuna were significantly associated with bathymetry, SST, eddy kinetic energy, surface chlorophyll concentration, and surface wind speed, with SST being the most important parameter. The bluefin tuna exhibited significant preference for areas with continental slope waters (2,800–3,400 m), moderate SSTs (24–25 and 26–27°C), moderate eddy kinetic energy (251–355 cm² s⁻²), low surface chlorophyll concentrations (0.10–0.16 mg m⁻³), and moderate wind speeds (6–7 and 9–9.5 m s⁻¹). A resource selection function of the bluefin tuna in the GOM was estimated using a discrete choice model and was found to be highly sensitive to SST. These habitat utilization and preference patterns exhibited by breeding bluefin tuna can be used to develop habitat models and estimate the probable breeding areas of bluefin tuna in a dynamic environment.     

Phytoplankton community structure and primary production in small intertidal estuarine-bay ecosystem (eastern English Channel,France)

From May 2002 to October 2003, a fortnightly sampling programme was conducted in a restricted macrotidal ecosystem in the English Channel, the Baie des Veys (France). Three sets of data were obtained: (1) physico-chemical parameters, (2) phytoplankton community structure illustrated by species composition, biovolume and diversity, and (3) primary production and photosynthetic parameters via P versus E curves. The aim of this study was to investigate the temporal variations of primary production and photosynthetic parameters in this bay and to highlight the potential links with phytoplankton community structure. The highest level of daily depth-integrated primary production Pz (0.02–1.43 g C m⁻² d⁻¹) and the highest maximum photosynthetic rate P ^B _max (0.39–8.48 mg C mg chl a ⁻¹ h⁻¹) and maximum light utilization coefficient α^B [0.002–0.119 mg C mg chl a ⁻¹ h⁻¹ (μmol photons m⁻² s⁻¹)] were measured from July to September. Species succession was determined based on biomass data obtained from cell density and biovolume measurements. The bay was dominated by 11 diatoms throughout the year. However, a Phaeocystis globosa bloom (up to 25 mg chl a m⁻³, 2.5 × 10⁶ cells l⁻¹) was observed each year during the spring diatom bloom, but timing and intensity varied interannually. Annual variation of primary production was due to nutrient limitation, light climate and water temperature. The seasonal pattern of microalgal succession, with regular changes in composition, biovolume and diversity, influenced the physico-chemical and biological characteristics of the environment (especially nutrient stocks in the bay) and thus primary production. Consequently, investigation of phytoplankton community structure is important for developing the understanding of ecosystem functioning, as it plays a major role in the dynamics of primary production.     

Ferrate(VI) oxidation of ibuprofen: A kinetic study

The kinetics of ferrate(VI) (Fe^VIO₄ ²⁻, Fe(VI)) oxidation of an antiphlogistic drug, ibuprofen (IBP), as a function of pH (7.75–9.10) and temperature (25–45°C) were investigated to see the applicability of Fe(VI) in removing this drug from water. The rates decrease with an increase in pH and the rates are related to protonation of ferrate(VI). The rates increase with an increase in temperature. The E _a of the reaction at pH 9.10 was calculated as 65.4±6.4 kJ mol⁻¹. The rate constant of the HFeO₄ ⁻ with ibuprofen is lower than with the sulphur drug, sulfamethoxazole. The use of Fe(VI) to remove ibuprofen is briefly discussed.     

Effects of diurnal variations in phytoplankton photosynthesis obtained from natural fluorescence

Effects of diurnal variation in phytoplankton photosynthesis on estimating daily primary production (DPP) were examined using field data from Sagami Bay, Japan. DPP at 5 m depth was calculated from the continuous data of chlorophyll a (Chl a) and light intensity monitored by a natural fluorescence sensor with and without considering time-dependent changes in the photosynthesis–irradiance (P–E) relationship. Chl a could be estimated from natural fluorescence examining the variations in the quantum yield of fluorescence (φ _f) and Chl a-specific light absorption coefficient (a*_ph), and relating them to Chl a. The P–E relationship was determined by water sampling three times daily. A distinct diurnal pattern was observed for the maximum photosynthetic rate (P*_max), being maximal at noon, while periodicity of the maximum light utilization coefficient (α*) was less obvious. The actual DPP was calculated by interpolating the P–E parameters from those obtained at dawn, noon, and dusk. For comparison, DPP was calculated by fixing the P–E parameters as the constants measured at dawn, noon or dusk for a day. The difference from the actual DPP was small when the P–E parameters measured at dawn (3% on average) and noon (5%) were used as the constants for a day. The difference was largest when the values at dusk were used (−43%). The medium values of P*_max at dawn, its low values at dusk, and the fact that a major part of the DPP was produced around noon were responsible for these results. The present study demonstrates that measurement of the P–E parameters at dawn or noon can give a good estimation of DPP from natural fluorescence.     

Phytoplankton growth and microzooplankton grazing rates in a restricted Mediterranean lagoon (Bizerte Lagoon,Tunisia)

Phytoplankton growth and microzooplankton grazing were investigated in the restricted Bizerte Lagoon in 2002 and 2004. The 2002 study, carried out at one station from January to October, showed significant seasonal variations in phytoplankton dynamics. High growth rates (0.9–1.04 day⁻¹), chlorophyll a (Chl a) concentrations (6.6–6.8 μg l⁻¹) and carbon biomass (392–398 μg C l⁻¹) were recorded in summer (July), when several chain-forming diatoms had intensively proliferated and dominated the carbon biomass (74%). In 2004, four stations were studied during July, a period also characterized by the high proliferation of several diatoms that made up 70% of the algal carbon biomass. In 2004, growth rates (0.34–0.45 day⁻¹) and biomass of algae (2.9–5.4 μg Chl a l⁻¹ and 209–260 μg C l⁻¹) were low, which may be related to the lower nutrient concentrations recorded in 2004. Microzooplankton >5 μm were mainly composed of heterotrophic dinoflagellates and ciliates. Microzooplankton biomass peaked during summer (2002 320–329, 2004 246–361 μg C l⁻¹), in response to the enhanced phytoplankton biomass and production. The grazer biomass was dominated by ciliates (71–76%) in July 2002 and by heterotrophic dinoflagellates (52–67%) in July 2004. Throughout the year and at different stations, microzooplankton grazed actively on phytoplankton, removing 26–58% of the Chl a and 57-84% of the primary production. In 2002, the highest grazing impact was observed on the large algae (>10 μm) during the period of diatom dominance. These results have a significant implication for carbon export to depth. Indeed, the recycling of most of the diatom production by the microbial food web in the upper water column would reduce the flux of material to the seafloor. This should be considered when modeling the carbon cycling in coastal environments and under conditions of diatom dominance. During both studies, ciliates had higher growth rates (0.5–1.5 day⁻¹) and a higher carbon demand (165–470 μg C l⁻¹ day⁻¹) than dinoflagellates (0.1–0.5 day⁻¹, 33–290 μg C l⁻¹ day⁻¹). Moreover, when grazer biomass was dominated by ciliates (in July 2002), herbivory accounted for 71–80% of the C ingested by microzooplankton while it accounted only for 14–23% when dinoflagellates dominated the grazer biomass (in July 2004). These results suggest that, in contrast to findings from open coastal waters, ciliate species of the restricted Bizerte Lagoon were more vigorous grazers of the large algae (diatoms) than were dinoflagellates.     

Spring sea ice photosynthesis,primary productivity and biomass distribution in eastern Antarctica, 2002–2004

While it is known that Antarctic sea ice biomass and productivity are highly variable over small spatial and temporal scales, there have been very few measurements from eastern Antarctic. Here we attempt to quantify the biomass and productivity and relate patterns of variability to sea ice latitude ice thickness and vertical distribution. Sea ice algal biomass in spring in 2002, 2003 and 2004 was low, in the range 0.01–8.41 mg Chl a m⁻², with a mean and standard deviation of 2.08 ± 1.74 mg Chl a m⁻² (n = 199). An increased concentration of algae at the bottom of the ice was most pronounced in thicker ice. There was little evidence to suggest that there was a gradient of biomass distribution with latitude. Maximum in situ production in 2002 was approximately 2.6 mg C m⁻² h⁻¹ with assimilation numbers of 0.73 mg C (mg Chl a)⁻¹ h⁻¹. Assimilation numbers determined by the ¹⁴C incubations in 2002 varied between 0.031 and 0.457 mg C (mg Chl a)⁻¹ h⁻¹. Maximum fluorescence quantum yields of the incubated ice samples in 2002 were 0.470 ± 0.041 with E _k indices between 19 and 44 μmol photons m⁻² s⁻¹. These findings are consistent with the shade-adapted character of ice algal communities. In 2004 maximum in situ production was 5.9 mg C m⁻² h⁻¹ with an assimilation number of 5.4 mg C (mg Chl a)⁻¹ h⁻¹. Sea ice biomass increased with ice thickness but showed no correlation with latitude or the time the ice was collected. Forty-four percent of the biomass was located in bottom communities and these were more commonly found in thicker ice. Surface communities were uncommon.     

Microsensor studies of photosynthesis and respiration in the symbiotic foraminifer Orbulina universa

Oxygen and pH microelectrodes were used to investigate the microenvironment of the planktonic foraminifer Orbulina universa and its dinoflagellate endosymbionts. A diffusive boundary layer surrounds the foraminiferal shell and limits the O₂ and proton transport from the shell to the ambient seawater and vice versa. Due to symbiont photosynthesis, high O₂ concentrations of up to 206% air saturation and a pH of up to 8.8, i.e. 0.5 pH units above ambient seawater, were measured at the shell surface of the foraminifer at saturating irradiances. The respiration of the host–symbiont system in darkness decreased the O₂ concentration at the shell surface to <70% of the oxygen content in the surrounding air-saturated water. The pH at the shell surface dropped to 7.9 in darkness. We measured a mean gross photosynthetic rate of 8.5 ± 4.0 nmol O₂ h⁻¹ foraminifer⁻¹. The net photosynthesis averaged 5.3 ± 2.7 nmol O₂ h⁻¹. In the light, the calculated respiration rates reached 3.9 ± 1.9 nmol O₂h⁻¹, whereas the dark respiration rates were significantly lower (1.7 ± 0.7 nmol O₂ h⁻¹). Experimental light–dark cycles demonstrated a very dynamic response of the symbionts to changing light conditions. Gross photosynthesis versus scalar irradiance curves (P vs E _o curves) showed light saturation irradiances (E _k) of 75 and 137 μmol photons m⁻² s⁻¹ in two O. universa specimens, respectively. No inhibition of photosynthesis was observed at irradiance levels up to 700 μmol photons m⁻² s⁻¹. The light compensation point of the symbiotic association was 50 μmol photons m⁻² s⁻¹. Radial profile measurements of scalar irradiance (E _o) inside the foraminifera showed a slight increase at the shell surface up to 105% of the incident irradiance (E _d). Received: 26 January 1998 / Accepted: 11 April 1998     

UV- and salinity-induced oxidative effects in the marine diatom <Emphasis Type="Italic">Cylindrotheca closterium</Emphasis> during simulated emersion

The diatom Cylindrotheca closterium was exposed to transient light- and osmotic conditions as occur during its tidal emersion. The objective was to analyze how this simulated emersion contributes to the production of active oxygen species (AOS) and via this, to oxidative cell damage. Light- and salinity conditions were varied in factorial combination: low light (no UVB) or high light (unweighted UVB-dose rates of respectively 0.01; 0.07; 0.24; 1.03 W m⁻²) at normal (30 psu) or high salinity (60 psu). UVB (0.01–0.24 W m⁻²) and high salinity had a significant, negative effect on the photosynthetic efficiencies ΔF/F _m’ (steady-state quantum yield) and F _v/F _m (maximum yield). UVB at 1.03 W m⁻² (15 kJ m⁻² d⁻¹) almost arrested electron transport. At ecologically relevant UVB levels, i.e. below 0.24 W m⁻² (≈3.4 kJ m⁻² d⁻¹) with UVB:PAR<0.4:100 (PAR photosynthetically active radiation) only dynamic photoinhibition was observed (protection via heat dissipation). Non-photochemical quenching was positively correlated with the de-epoxidation of diadinoxanthin (DD) to diatoxanthin (DT). A decreasing ratio DT/(DD+DT) after 4 h of UVB at >0.07 W m⁻² and at 60 psu indicated a reversal of the diatom xanthophyll cycle (diminished photoprotection) which may be caused by an enhanced AOS production. Oxidative stress and -damage to C. closterium cells were assessed applying fluorescent indicator dyes, via confocal microscopy and quantitative image analysis. AOS production rates (cellular DCF fluorescence) were stimulated by UV, and were ~50% higher at 60 psu. AOS production decreased with an increasing pre-exposure (0–4 h) to normal UVB (0.24 W m⁻²), which indicated a stimulation of the antioxidative defence. Non-protein thiols (indicator CMF) and glutathione pools (HPLC-analyzed) decreased with UVB-dose rates (0.01–0.24 W m⁻²), most likely due to AOS-mediated thiol oxidation. Hypersalinity (60 psu) and UVB (0.01–0.24 W m⁻²) caused membrane depolarization (dye DIBAC₄(3)) and phospholipid hydrolysis (phospholipase A₂ dye: bis-BODIPY FL-C₁₁-PC). AOS production may have diminished the membrane polarity, and peroxidized the membrane lipids (HPLC-analyzed malondialdehyde) which enhanced PLA₂ activity. The dyes indicated an increased oxidative (lipid) damage at a 15% inhibition of photosynthesis in this diatom, at UVB levels and salinities that can be expected in situ during its periodic tidal emersion.     

Differences in photosynthetic pigment signatures between phytoneuston and phytoplankton communities in a coastal lagoon of Baja California

In order to understand the relationships between the dynamics of phytoplankton populations in the surface microlayer (MIL) and in the water column below (SSW), this study used high-performance liquid chromatography-derived pigment markers in samples from a coastal lagoon of Baja California (Estero de Punta Banda, EPB) under summer (October 2003) and winter (December 2003) conditions. Photosynthetic pigment signatures of phytoplankton at the air–sea interface (phytoneuston) and subsurface measurements were related to bottom-up (temperature, salinity, nutrient concentrations) and top-down factors (zooplankton abundance). Slicks and scum layers were observed in the inner part of the lagoon and coincided with greater stratification of layers just below the sea surface and lower wind intensities. In general, spatial variability in pigment markers and ancillary data was very high and resulted in non-significant differences between MIL and subsurface samples when different regions of EPB or sampling dates were compared. However, different patterns were found between pigments and environmental factors of MIL and SSW samples when the relative numbers of stations with positive and negative differences (ΔX = X _MIL−X _SSW) were computed. For each survey, pigment markers of phytoneuston and phytoplankton samples were not necessarily correlated. Further analysis revealed that those markers (19′-butanoyloxyfucoxanthin, prasinoxanthin, divinil-chlorophyll a) corresponded to picophytoplankton groups (haptophyte, prasinophyte, and prochlorophyte). On both dates, the MIL was enriched in 19′-hexanoyloxyfucoxanthin (a marker for a type 4 haptophyte) and fucoxanthin (marker for bacillariophytes, haptophytes, and crysophytes) and depleted in peridinin (marker for dinophytes). Different zooplankton grazers accumulated in the MIL (loricate tintinnids) and in SSW (copepod nauplii).     

Photoacclimation in phytoplankton: implications for biomass estimates, pigment functionality and chemotaxonomy

Chl a and C-normalized pigment ratios were studied in two dinophytes (Prorocentrum minimum and Karlodinium micrum), three haptophytes (Chrysochromulina leadbeateri, Prymnesium parvum cf. patelliferum, Phaeocystis globosa), two prasinophytes (Pseudoscourfieldia marina, Bathycoccus prasinos) and the raphidophyte Heterosigma akashiwo, in low (LL, 35 μmol photons m⁻² s⁻¹) and high light (HL, 500 μmol photons m⁻² s⁻¹). Pigment ratios in LL and HL were compared against a general rule of photoacclimation: LL versus HL ratios ≥1 are typical for light-harvesting pigments (LHP) and <1 for photoprotective carotenoids. Peridinin, prasinoxanthin, gyroxanthin-diester and 19′-butanoyloxy-fucoxanthin were stable chemotaxonomic markers with less than 25% variation between LL versus HL Chl a–normalized ratios. As expected, Chls exhibited LL/HL to Chl a ratios >1 with some exceptions such as Chl c ₃ in P. globosa and MV Chl c ₃ in C. leadbeateri. LL/HL to Chl a ratios of photosynthetic carotenoids were close to 1, except Hex-fuco in P. globosa (four-fold higher Chl a ratio in HL vs LL). Although pigment ratios in P. globosa clearly responded to the light conditions the diadinoxanthin-diatoxanthin cycle remained almost unaltered at HL. Total averaged pigment and LHP to C ratios were significantly higher in LL versus HL, reflecting the photoacclimation status of the studied species. By contrast, the same Chl a-normalized ratios were weakly affected by the light intensity due to co-variation with Chl a. Based on our data, we suggest that the interpretation of PPC and LHP are highly dependent on biomass normalization (Chl a vs. C).     

In situ net primary productivity and photosynthesis of Antarctic sea ice algal, phytoplankton and benthic algal communities

Primary production at Antarctic coastal sites is contributed from sea ice algae, phytoplankton and benthic algae. Oxygen microelectrodes were used to estimate sea ice and benthic primary production at several sites around Casey, a coastal area in eastern Antarctica. Maximum oxygen export from sea ice was 0.95 mmol O₂ m⁻² h⁻¹ (~11.7 mg C m⁻² h⁻¹) while from the sediment it was 6.08 mmol O₂ m⁻² h⁻¹ (~70.8 mg C m⁻² h⁻¹). When the ice was present O₂ export from the benthos was either low or negative. Sea ice algae assimilation rates were up to 3.77 mg C (mg Chl-a)⁻¹ h⁻¹ while those from the benthos were up to 1.53 mg C (mg Chl-a)⁻¹ h⁻¹. The contribution of the major components of primary productivity was assessed using fluorometric techniques. When the ice was present approximately 55–65% of total daily primary production occurred in the sea ice with the remainder unequally partitioned between the sediment and the water column. When the ice was absent, the benthos contributed nearly 90% of the primary production.     

Swimming ability of eels (<Emphasis Type="Italic">Anguilla rostrata,Conger oceanicus</Emphasis>) at estuarine ingress: contrasting patterns of cross-shelf transport?

The transport of eel early life stages may be critical to their population dynamics. This transport from ocean spawning to freshwater, estuarine and coastal nursery areas is a combination of physical and biological processes (including swimming behavior). In New Jersey, USA, the American eel (Anguilla rostrata) enters estuaries as glass eels (48.7–68.1 mm TL) in contrast to the Conger eel (Conger oceanicus) that enters as larger (metamorphosing) leptocephali (68.3–117.8 mm TL). To begin to understand the mechanisms of cross-shelf transport for these species, we measured the potential swimming capability (critical swimming speed, U _crit) under ambient conditions throughout the ingress season. A. rostrata glass eels were collected over many months (January–June) at a range of temperatures (4–21°C), with relative condition declining over the course of the ingress period as temperatures warmed. C. oceanicus occurred later in the season (April–June) and at warmer temperatures (14–24.5°C). Mean U _crit values for A. rostrata (11.7–13.3 cm s⁻¹) and C. oceanicus (14.7–18.6 cm s⁻¹) were comparable, but variable, with portions of the variability explained by water temperature, relative condition, ontogenetic stage, and fish length. Travel times to Little Egg Inlet, New Jersey, estimated using 50% U _crit values, indicate it would take A. rostrata ~30 and ~60 days to swim from the shelf edge and Gulf Stream, respectively. Travel times for C. oceanicus were shorter, ~20 days from the shelf edge, and ~45 days from the Gulf Stream. Despite differences in life stage, our results indicate both species are competent swimmers, and suggest they are capable of swimming from the Gulf Stream and/or edge of the continental shelf to estuarine inlets.