Macrozoobenthos diversity in an oxygen minimum zone off northern Namibia

A benthological survey in the Benguela upwelling area off northern Namibia (located at 17.3°S and water depth ranging between 26 and 117 m) showed the concentration of dissolved oxygen and the accumulation of organic-rich sediments to control macrozoobenthic community patterns. In contrast to highly biodiverse nearshore areas with well-structured shell deposits of the brachiopod Discinisca tenuis (Sowerby 1847), the benthic community in the oxygen minimum zone (OMZ) decreased strongly in species numbers. Nevertheless, a well-established community ranging from 13 to 31 species persisted. Species densities (300–3,350 ind m⁻²) and biomass (4–109 g afdw/m²) were surprisingly high for areas with near bottom oxygen concentrations from 0.06 to 0.88 ml l⁻¹. In contrast to OMZ’s of other upwelling areas, where the benthic macrofauna is generally dominated by small-bodied polychaetes, off Namibia larger key organisms like the bivalve Nuculana bicuspidata (Gould 1845) and the snail Nassarius vinctus (Marrett 1877) accounted for a large proportion of the macrozoobenthos >1 mm. This is supposed to have a distinct effect on the functional properties of the sediments.

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铜尾矿复垦后土壤微生物活性及其群落功能多样性研究

对安徽铜陵五公里尾矿区三叶草复垦后的土壤微生物活性和群落的功能多样性研究表明,复垦后每克土壤微生物细菌数已达2.3×107个,并存在一定量耐Cu2 、Cd2 、Zn2 、Cr6 、Pb2 、Ni2 的菌株,但种类少,主要为芽孢杆菌属、假单胞菌属和短杆菌属。BIOLOG测试结果显示,铜镉重金属离子的复合污染使土壤微生物群落丰富度降低;外源耐铜镉微生物菌剂的添加使尾矿区土壤微生物群落代谢剖面(AWCD)变化明显,提高微生物对单一碳源底物的利用能力,增加利用不同碳底物的微生物数量,减轻了重金属污染引起的土壤微生物群落功能多样性的下降,为尾矿区生境加速恢复提供一条有效途径。     

喀斯特山地草地植物群落物种数量特征及多样性分析

选择贵州典型喀斯特山地草地植物群落为研究对象,采用标准样地调查法,对不同海拔、坡向的植物群落数量特征、物种特性、以及物种丰富度、多样性、均匀性等特征展开研究,结果表明,（1）喀斯特山地草地植物群落密度随海拔升高呈显著增加趋势（F=20.600;P≤0.01）。植物群落中矛叶荩草（Arthraxon lanceolatus）和扭黄茅（Heteropogon contortus）种群在数量上占优势,同时矛叶荩草和扭黄茅种群密度随海拔升高呈现出增加趋势;但矛叶荩草种群密度在群落中的比例呈现出下降趋势,而扭黄茅种群密度在群落中的比例呈现出升高趋势。（2）喀斯特山地草地植物群落以禾本科（Gramineae）、菊科（Compositae）、蔷薇科（Rosaceae）、唇形科（Labiatae）为主;其中禾本科植物种类比例随海拔升高呈现出下降趋势,而菊科、蔷薇科、唇形科植物种类比例呈现出升高趋势。（3）喀斯特山地草地植物群落丰富度指数随海拔升高呈现出增加趋势,Simpson多样性指数、Shannon-Wiener多样性指数随海拔升高呈现先降后升趋势,Peilow均匀性指数随海拔升高呈现下降趋势。     

Latitudinal variation in local interactions and regional enrichment shape patterns of marine community diversity

While communities are shaped by both local interactions and enrichment from the regional species pool, we propose a hypothesis that the balance of these forces shifts with latitude, with regional enrichment dominating at high latitudes and local interactions dominating at low latitudes. To test this hypothesis, we conducted a latitudinal-scale experiment with marine epifaunal communities. In four regions of the North Atlantic Ocean and Caribbean Sea, we used mimics of ecosystem engineers to manipulate biogenic structural complexity. We iteratively evaluated diversity patterns of experimental communities up to one year after deployment. Additional data were also collected from one of our tropical sites 2.5 years after initial deployment. As hypothesized, we found a reciprocal latitudinal gradient in the effects of the structurally complex mimics and regional enrichment. In the tropics, local diversity was always higher in association with the mimics than in exposed areas that were more open to predation. This effect was consistent across two spatial scales and beyond the one-year timescale of the experiment. In temperate communities, no consistent effects of the mimics on diversity were observed. However, the proportion of species from the regional species pool that were present at the local scale increased from the tropics to the temperate zone, consistent with the hypothesis that higher-latitude communities may experience greater influence from the regional species pool than communities at low latitudes. This study represents the first large-scale experimental demonstration that suggests that the relative impact of local interactions and regional enrichment on community diversity may depend on latitude.     

Temporal variance of disturbance did not affect diversity and structure of a marine fouling community in north-eastern New Zealand

Natural heterogeneity in ecological parameters, like population abundance, is more widely recognized and investigated than variability in the processes that control these parameters. Experimental ecologists have focused mainly on the mean intensity of predictor variables and have largely ignored the potential to manipulate variances in processes, which can be considered explicitly in experimental designs to explore variation in causal mechanisms. In the present study, the effect of the temporal variance of disturbance on the diversity of marine assemblages was tested in a field experiment replicated at two sites on the northeast coast of New Zealand. Fouling communities grown on artificial settlement substrata experienced disturbance regimes that differed in their inherent levels of temporal variability and timing of disturbance events, while disturbance intensity was identical across all levels. Additionally, undisturbed assemblages were used as controls. After 150 days of experimental duration, the assemblages were then compared with regard to their species richness, abundance and structure. The disturbance effectively reduced the average total cover of the assemblages, but no consistent effect of variability in the disturbance regime on the assemblages was detected. The results of this study were corroborated by the outcomes from simultaneous replicate experiments carried out in each of eight different biogeographical regions around the world.     

Microbial RNA and DNA synthesis in marine sediments

A technique for measuring rates of RNA and DNA synthesis in sedimentary microbial communities has been adapted from methods developed for marine and freshwater microplankton research. The procedure measures the uptake, incorporation and turnover of exogenous [2, ³H]-adenine by benthic microbial populations. With minor modification, it is applicable to a wide range of sediment types. Measurement of nucleic acid synthesis rates are reported from selected benthic marine environments, including coral reef sediments (Kaneohe Bay, Oahu, Hawaii), intertidal beach sands (Oahu and southern California) and California borderland basin sediment (San Pedro Basin), and comparisons are made to selected water-column microbial communities. Biomass-specific rates of nucleic acid synthesis in sediment microbial communities were comparable to those observed in water-column assemblages (i.e., 0.02 to 2.0 pmol deoxyadenine incorporated into DNA [ng ATP]^-1 h^-1 and 0.2 to 8.9 pmol adenine incorporated into RNA [ng ATP]^-1 h^-1). DNA synthesis rates were used to calculate carbon production estimates ranging from 2 g C cm^-3 h^-1 in San Pedro Basin sediment (880 m water depth) to 807 g C cm^-3 h^-1 in coral reef sediment from the Kaneohe Bay. Microbial community specific growth rate, (d^-1), estimated from DNA synthesis rates in surface sediments ranged from 0.1 in San Pedro Basin to 4.2 in Scripps Beach (La Jolla, California) intertidal sand.     

16S rDNA克隆文库方法对制药废水处理系统中微生物多样性的研究

采用分子生物学构建16S rDNA克隆文库的方法对制药废水交替流生物反应器内的微生物群落进行了多样性研究,该反应器对CODcr、氨氮、石油类化合物以及多种特殊污染物均有较高的去除效率.代表序列的BLAST比对结果表明微生物群落具有高度多样性,优势菌群为Proteobacteria,占78.6%.微生物群落分属7个不同纲,优势顺序为Alphaproteobacteria (39.8%),Betaproteobacteria(23.5%),Gammaproteobacteria(14.3%),Chlorobil(6.3%),Firmicutes(4.1%),Flavobacteria (1.0%),Deltaproteobacteria(1.0%.使用Vector NTI Suite 6.0软件对50个OTU的代表序列和NCBI基因库中最相近的已知细菌16S rDNA序列绘制系统进化树,表明克隆子与已知菌之间的基因系统进化关系.     

Genetic diversity increases population productivity in a sessile marine invertebrate

Reductions in genetic diversity can have widespread ecological consequences: populations with higher genetic diversity are more stable, productive and resistant to disturbance or disease than populations with lower genetic diversity. These ecological effects of genetic diversity differ from the more familiar evolutionary consequences of depleting genetic diversity, because ecological effects manifest within a single generation. If common, genetic diversity effects have the potential to change the way we view and manage populations, but our understanding of these effects is far from complete, and the role of genetic diversity in sexually reproducing animals remains unclear. Here, we examined the effects of genetic diversity in a sexually reproducing marine invertebrate in the field. We manipulated the genetic diversity of experimental populations and then measured individual survival, growth, and fecundity, as well as the size of offspring produced by individuals in high and low genetic diversity populations. Overall, we found greater genetic diversity increased performance across all metrics, and that complementarity effects drove the increased productivity of our high-diversity populations. Our results show that differences in genetic diversity among populations can have pervasive effects on population productivity within remarkably short periods of time.     

A trait specific model of competition in a spatially structured plant community

The non-random dispersal of plant propagules is thought to counter competitive exclusion and thus promote the survival of competitively inferior species. We investigated this process by modelling the outcome of interactions between species with competitive ability defined as a function of both life-history traits and the environment with both random and clustered dispersal strategies and in environmentally homogeneous and heterogeneous environments. Four main results emerged: (1) environmental heterogeneity was seen to promote co-existence in conjunction with associated trait variation for tolerance to the environmental variable and where this trait variation was effectively limited by ‘trade-off’ such that no single species had an overall competitive advantage, (2) consistent with theory, random dispersal appeared to enhance the likelihood of competitive exclusion, whereas clustering favoured co-existence, (3) the ecological outcome of interactions between dispersal and competitive relationships varied as a function of the trait determining the competitive advantage within a particular environment, and (4) promotion of co-existence by clustered dispersal was most marked when associated with environmental heterogeneity. It is argued that these results suggest that current ecological models of species interactions may need to be modified to incorporate a more realistic understanding of competitive ability if we are to better understand the factors effecting species co-existence.     

Local variation of within-host clonal diversity coupled with genetic homogeneity in a marine trematode

Despite their ubiquity and importance to intertidal ecosystems, information is currently lacking regarding the genetic diversity of trematode parasites within coastal organisms and the distribution of their genetic variation among intertidal habitats. In this study, we quantified the clonal diversity of the coastal marine trematode Maritrema novaezealandensis within Zeacumantus subcarinatus snail hosts from three coastal bays in Otago Harbour, New Zealand, using five microsatellite loci to determine if differences exist in the frequency of occurrence of multi-clone infections. In addition, we examined gene flow among M. novaezealandensis collected from the three bays. The frequency of mixed-clone infections varied fourfold among bays and no genetic differentiation was detected among intertidal bays. Across the coastal bays studied, M. novaezealandensis comprises a single population that is potentially infecting multiple Z. subcarinatus populations with varying life history traits.     

Environmental grain and polychaete species' diversity in a bathyal benthic community

Patterns of polychaete species' dispersion in the San Diego Trough, Southern California Continental Borderland, North Pacific Ocean, at a depth of 1230 m are analyzed. Samples consist of 4 replicate 0.25-m² box cores, each partitioned into twenty-five 0.01-m² subcores, and of 1 unpartitioned core. The sampler is biased but, when this bias is taken into account, few species show strong aggregation either between or within cores. If all species are considered together as replicates, intraspecific aggregation is detected between cores, but uniform dispersion dominates within cores. Patchiness or habitat partitioning on the assayed scales can thus account for little of the extremely high species' diversity observed. Apparently due to an environmental structure having a “grain” smaller than 0.01-m², the diversity of species assumed to be sedentary is higher than the diversity of species assumed to be mobile. One evidence of such structure is a negative covariance between paraonid abundance and density of “mudballs” constructed by a cirratulid. Consideration of these results suggests that either grain specialization or simultaneous, biogenic disequilibrium or both act on spatial scales smaller than 0.01-m² to maintain high polychaete species' diversity in the San Diego Trough.     

Microbial community variation and its relationship with nitrogen mineralization in historically altered forests

Past land use can impart soil legacies that have important implications for ecosystem function. Although these legacies have been linked with microbially mediated processes, little is known about the long-term influence of land use on soil microbial communities themselves. We examined whether historical land use affected soil microbial community composition (lipid profiles) and whether community composition was related to potential net nitrogen (N) mineralization rates in southern Appalachian (USA) forest stands abandoned from agriculture or logging and reforested >50 yr ago. Microbial community composition was determined by a hybrid procedure of phospholipid fatty acid (PLFA) and fatty acid methyl ester (FAME) analysis. We found that community composition varied significantly with past land use. Communities in formerly farmed stands had a higher relative abundance of markers for gram-negative bacteria and a lower abundance of markers for fungi compared with previously logged and reference (i.e., no disturbance history) stands. Potential net N mineralization rates were negatively correlated with fungal and gram-negative bacterial markers in both farmed and reference stands, and fungal abundance and soil bulk density effectively predicted mineralization rates in all stands. Our results indicate that the alteration of microbial communities by historical land use may influence the ecosystem processes they mediate. This is in contrast to typical expectations about microbial community resilience to change. Here, the decrease in fungal abundance observed from disturbance appeared to result in decreased nitrogen mineralization over the long term.     

Use of environmental DNA in assessment of fish functional and phylogenetic diversity

Assessing the impact of global changes and protection effectiveness is a key step in monitoring marine fishes. Most traditional census methods are demanding or destructive. Nondisturbing and nonlethal approaches based on video and environmental DNA are alternatives to underwater visual census or fishing. However, their ability to detect multiple biodiversity factors beyond traditional taxonomic diversity is still unknown. For bony fishes and elasmobranchs, we compared the performance of eDNA metabarcoding and long-term remote video to assess species’ phylogenetic and functional diversity. We used 10 eDNA samples from 30 L of water each and 25 hr of underwater videos over 4 days on Malpelo Island (pacific coast of Colombia), a remote marine protected area. Metabarcoding of eDNA detected 66% more molecular operational taxonomic units (MOTUs) than species on video. We found 66 and 43 functional entities with a single eDNA marker and videos, respectively, and higher functional richness for eDNA than videos. Despite gaps in genetic reference databases, eDNA also detected a higher fish phylogenetic diversity than videos; accumulation curves showed how 1 eDNA transect detected as much phylogenetic diversity as 25 hr of video. Environmental DNA metabarcoding can be used to affordably, efficiently, and accurately census biodiversity factors in marine systems. Although taxonomic assignments are still limited by species coverage in genetic reference databases, use of MOTUs highlights the potential of eDNA metabarcoding once reference databases have expanded.     

Relative and interactive effects of plant and grazer richness in a benthic marine community

The interactive effects of changing biodiversity of consumers and their prey are poorly understood but are likely to be important under realistic scenarios of biodiversity loss and gain. We performed two factorial manipulations of macroalgal group (greens, reds, and browns) and herbivore species (amphipods, sea urchin, and fish) composition and richness in outdoor mesocosms simulating a subtidal, hard-substratum estuarine community in North Carolina, U.S.A. In the experiment where grazer richness treatments were substitutive, there were no significant effects of algal or herbivore richness on final algal biomass. However, in the experiment in which grazer treatments were additive (i.e., species-specific densities were held constant across richness treatments), we found strong independent and interactive effects of algal and herbivore richness. Herbivore polycultures reduced algal biomass to a greater degree than the sum of the three herbivore monocultures, indicating that the measured grazer richness effects were not due solely to increased herbivore density in the polycultures. Taking grazer density into account also revealed that increasing algal richness dampened grazer richness effects. Additionally, the effect of algal richness on algal biomass accumulation was far stronger when herbivores were absent, suggesting that grazers can utilize the increased productivity and mask the positive effects of plant biodiversity on primary production. Our results highlight the complex independent and interactive effects of biodiversity between adjacent trophic levels and emphasize the importance of performing biodiversity-ecosystem functioning experiments in a realistic multi-trophic context.     

Microbial diversity in the marine sponge Aplysina cavernicola (formerly Verongia cavernicola) analyzed by fluorescence in situ hybridization (FISH)

We have employed electronmicroscopical methods (SEM, TEM) to document the microbial community associated with the marine sponge Aplysina cavernicola (formerly Verongia cavernicola, class Demospongiae). Five dominant bacterial types were identified, three of which resemble the morphotypes originally described by Vacelet (1975). One bacterial type possesses morphological properties that are characteristic of the genus Planctomyces. In addition, morphologically uniform bacteria which reside inside the nuclei of host cells were observed. Using in situ hybridization with fluorescently labelled rRNA probes directed against known bacterial groups, the phylogenetic affiliation of the mesohyl bacteria was assessed. It could be shown that the vast majority of mesohyl bacteria belongs to the domain Bacteria with a low GC content. Among the Bacteria, the delta-Proteobacteria were most abundant, followed by the gamma-Proteobacteria and representatives of the Bacteroides cluster. Clusters of Gram-positive bacteria with a high GC content were also found consistently in low amounts. No hybridization signal was obtained with probes specific to the domain Archaea, to the alpha- and beta-Proteobacteria and to the Cytophaga/Flavobacterium cluster. This study describes for the first time the application of the “top-to-bottom approach” using 16S rRNA probes and in situ hybridization to assess the microbial diversity in Aplysina sponges. Received: 18 December 1998 / Accepted: 12 March 1999     

Similar soft-bottom polychaete diversity in Arctic and Antarctic marine inlets

The diversity of soft-bottom polychaete assemblages in one Antarctic (Admiralty Bay) and two Arctic (Kongsfjord and van Mijenfjord) localities was compared. The data sets included 79 (Admiralty Bay), 80 (Kongsfjord) and 44 (van Mijenfjord) samples collected with use of 0.1 m² van Veen grab. The number of species per sample in Kongsfjord (mean 19.9 ± 8.0 SD) was higher than that in Van Mijenfjord (13.7 ± 8.3) or Admiralty Bay (15.7 ± 9.4). The differences in species numbers reflected differences in numbers of individuals in samples: 310.4 ind/0.1 m² ± 178.0 in Kongsfjord, 132.7 ind/0.1 m² ± 88.7 in Van Mijenfjord and 138.9 ind/0.1 m² ± 91.5 in Admiralty Bay. The Hurlbert diversity for 50 individuals (ES _[50]) was similar at all sites: 10.7 ± 3.4 in Kongsfjord, 9.7 ± 4.2 in van Mijenfjord, 10.5 ± 4.9 in Admiralty Bay. The shape of species accumulation curves was also similar for all localities. There was no significant difference (at P < 0.05) either in the total number of species or in species richness as estimated by Chao1 and Chao2 estimators. The generic and family richness at three sites was also similar. We found no substantial differences in the distribution of species among families. At both poles Terebellidae, Ampharetidae, Maldanidae, Spionidae and Polynoidae were dominant in terms of species numbers. The similarity of infaunal polychaete diversity at the polar sites studied contrasts with the substantial differences reported for epi-megafauna. Our study suggests that the patterns of diversity of polar benthic communities are shaped by patterns of habitat heterogeneity which appears to mask any historical processes.     

长白山春季不同植被类型中土壤线虫的群落结构

2001年和2002年春季,对长白山白北坡不同海拔的阔叶红松林、红松云冷杉混交林、暗针叶林、岳桦林和高山苔原中土壤线虫进行了研究.结果表明,5个样地中共鉴定到线虫7684条,分别隶属于2纲8目27科60属.其中绕线属Plectus,滑刃属Aphelenchoides,垫刃属Tylenchus,小杆属Rhabditis,盘旋属Rotylenchus和鹿角唇属Cervidellus为优势属,优势属线虫主要分布在枯枝落叶层中.土壤线虫数量与土壤含水量显著相关(r=0.357;P<0.01),在不同深度和植被群落中丰富度最大的是食细菌类群线虫.土壤线虫总数和营养类群在不同土壤深度中差异显著(P<0.05);食真菌类群数量与食细菌类群数量之和与植食类群数量之比(WI)和线虫成熟指数(MI)在不同深度也存在明显差异(P<0.01).     

A mathematical model of competition and colonization in a community of marine benthic algae

A mathematical model has been constructed for the algal community on the rocky shores of a Norwegian fjord. We report here on the studies of competition and colonization along a vertical transect from the upper intertidal to the sublittoral habiats. Results on species abundance and distribution (patterns of zonation) and time to reach maturity have been compared to observations both in the fjord area and in other rocky shore areas.Competition coefficients for the algae were inferred from plant morphology and shown to be in agreement with observations of algal abundance and their zone-forming ability. Competition restricts the distribution of the species, especially at the lower elevations, but does not alter their relative position. However, increasing uniform competition prolongs the time in which zone-forming can occur, and it also decreases the overall biomass which an area can sustain. Colonization by a single species may create transient stages in community development of the same order of magnitude as algae longevity, and probably also alters the zonation pattern to some degree.The simulation results indicate that the large-scale algal distribution pattern in the Hardangerfjord area results from global stability of the rocky shore community.     

Seed plant phylogenetic diversity and species richness in conservation planning within a global biodiversity hotspot in eastern Asia

One of the main goals of conservation biology is to understand the factors shaping variation in biodiversity across the planet. This understanding is critical for conservation planners to be able to develop effective conservation strategies. Although many studies have focused on species richness and the protection of rare and endemic species, less attention has been paid to the protection of the phylogenetic dimension of biodiversity. We explored how phylogenetic diversity, species richness, and phylogenetic community structure vary in seed plant communities along an elevational gradient in a relatively understudied high mountain region, the Dulong Valley, in southeastern Tibet, China. As expected, phylogenetic diversity was well correlated with species richness among the elevational bands and among communities. At the community level, evergreen broad‐leaved forests had the highest levels of species richness and phylogenetic diversity. Using null model analyses, we found evidence of nonrandom phylogenetic structure across the region. Evergreen broad‐leaved forests were phylogenetically overdispersed, whereas other vegetation types tended to be phylogenetically clustered. We suggest that communities with high species richness or overdispersed phylogenetic structure should be a focus for biodiversity conservation within the Dulong Valley because these areas may help maximize the potential of this flora to respond to future global change. In biodiversity hotspots worldwide, we suggest that the phylogenetic structure of a community may serve as a useful measure of phylogenetic diversity in the context of conservation planning.