Biodegradation of N,N-bis(carboxymethyl)-L-glutamate and its utilization as sole source of carbon,nitrogen, and energy by a Rhizobium radiobacter strain in seawater

Biodegradation of N,N-bis(carboxymethyl)-L-glutamate and its utilization by micro-organisms in marine environments were studied in Organization of Economic Development and Cooperation (OECD) screening tests and with pure bacterial cultures. Biodegradation in excess of 60% was achieved in closed bottle tests in less than 60 days, suggesting complete degradation. The bacterial strain isolated from marine sandy sediment and utilizing N,N-bis(carboxymethyl)-L-glutamate as sole source of carbon, nitrogen, and energy was identified as Rhizobium radiobacter. The strain was capable to mineralize N,N-bis(carboxymethyl)-L-glutamate in seawater and in synthetic media containing 0–60 g L^?1 sea salts. Growth and adaptation studies indicated that N-carboxymethyl-L-glutamate and L-glutamate are main metabolites.     

Relative growth of different species of marine algae in wasterwater-seawater mixtures

In recent studies, we developed a combined nutrient removal-marine aquaculture process for the tertiary treatment of wastewater and the production of commercially important shellfish. Part of this process consists of an outdoor mass cultivation system for marine algae. During our previous experiments we observed that marine diatoms almost exclusively are the dominant algal species in our outdoor cultures. To better understand this phenomenon of diatom dominance we grew 16 species of marine algae in continuous monoculture under laboratory conditions simulating to some degree the conditions prevailing in our outdoor experiments. Species such as Skeletonema costatum, Monochrysis lutheri and Tetraselmis sp., which were never dominant in our outdoor cultures, grew as well in monoculture, as Phaeodactylum tricornutum, frequently, the prevalent species outdoors. However, when monocultures of Dunaliella tertiolecta and Thalassiosira pseudonana (3H) were purposely contaminated with P. tricornutum, the latter species quickly became dominant. It is suggested that a complex interaction of environmental factors is usually responsible for the dominance of a particular species; one such factor may be the nitrogen source in the growth media. Under conditions of virtually, complete nitrogen assimilation, the carbon: nitrogen ratio in the algae was high (7 to 8) when NO ₃ ^- –N was the source of nitrogen, and low (4 to 6) when NH ₄ ⁺ –N was the prime form of nitrogen. When algal growth was low, resulting in a large inorganic nitrogen residue, the carbon:nitrogen ratio was low regardless of whether NO ₃ ^- –N or NH ₄ ⁺ –N was the main nitrogen source.Contribution No. 3297 from the Woods Hole Oceanographic Institution.     

Different responses of photosynthesis and flow cytometric signals to iron limitation and nitrogen source in coastal and oceanic Synechococcus strains (Cyanophyceae)

Iron plays an important role in marine primary productivity, and Synechococcus species as major contributors to the total photosynthetic biomass in the world’s oceans might be limited by iron supply in some regions. The present study aimed to compare the photosynthesis and flow cytometric signals of four Synechococcus strains grown under different iron concentrations with either nitrate or ammonium as the sole nitrogen source. Two oceanic strains were much more sensitive to iron limitation than two coastal strains. The inhibition of iron limitation on the growth, maximal PSII photochemical yield, maximal rate of relative electron transport and photochemical quenching of the two oceanic strains was higher than for their coastal counterparts. Under iron limitation condition, the connectivity factor between individual photosynthetic units (ρ) increased for the two coastal strains, while decreased for the two oceanic strains. Furthermore, iron limitation accelerated the Q _A re-oxidation of the two oceanic strains and the PQ pool re-oxidation of the two coastal strains. Under iron limitation condition, the cell size of the two coastal strains and intracellular pigment concentrations of the two oceanic strains decreased, while the side light scatter/front light scatter (SS/FS) ratio of the two coastal strains increased. In contrast to iron limitation, nitrogen source only marginally affected the photosynthesis of the four Synechococcus strains. Ammonium enhanced the growth of the two coastal strains under iron-replete condition. For the two oceanic strains, ammonium increased their cell size and decreased their SS/FS ratio and intracellular pigment concentrations under iron-deplete and iron-replete conditions.     

Utilization of L-lysine and L-arginine by the diatomPhaeodactylum tricornutum

The rate of growth ofPhaeodactylum tricornutum Bohlin with L-lysine as sole nitrogen source is about half that with ammonium or nitrate, and only one of the two nitrogen atoms in the lysine molecule appears to be used for growth. The organism cannot grow heterotrophically with lysine as carbon source. The rate of lysine metabolism is slow and most of that utilized is incorporated into protein, this process being faster in light than in darkness. The dark incorporation of lysine-carbon into protein is stimulated by addition of ammonium, whereas incorporation in light is unaffected. Arginine-carbon is also mainly incorporated into protein. Light has little effect on this incorporation, and addition of ammonium decreases it both in light and darkness. There is no appreciable conversion of the carbon of either amino acid to carbon dioxide. Although, under anaerobiosis, lysine is taken up and accumulated, negligible metabolism of lysine occurs.     

Isolation and characterization of an Arthrobacter sp. strain HB-5 that transforms atrazine

A bacterial strain (HB-5) capable of utilizing atrazine as sole carbon and nitrogen source for growth was isolated from an industrial wastewater sample by enrichment culture. The isolate was identified as Arthrobacter sp. according to its phenotypic features, physiologic and biochemical characteristics, and phylogenetic analysis. The strain exhibited faster atrazine degradation rates in atrazine-containing mineral media than the well-characterized atrazine-degrading bacteria Pseudomonas sp. ADP. The broad optimum pH and temperature ranges observed for strain HB-5 indicate that it has potential for remediation of atrazine-contaminated sites. Strain HB-5 first metabolizes atrazine to yield hydroxyatrazine. Then, the bacterium metabolizes hydroxyatrazine to cyanuric acid, but could not mineralize atrazine.     

不同氮源对4种海洋微藻生长的影响

采用实验室一次性培养的方法,研究了硝氮、氨氮、尿素和混合氨基酸等4种不同氮源对典型赤潮藻赤潮异弯藻Heterosigma akashiwo、凯伦藻Karenia sp.、球形棕囊藻Phaeocystis globosa和常见浮游植物优势种类角毛藻Chaetoceros sp.生长的影响。结果表明,这4种海洋微藻不仅能利用无机氮硝氮和氨氮,而且也均能利用有机氮尿素和混合氨基酸。赤潮异弯藻、凯伦藻和角毛藻均在以硝氮为唯一氮源时,比生长速率分别达到最大值0.45、0.52和0.70 d-1;而球形棕囊藻在以硝氮和尿素为唯一氮源时,比生长速率均达最大值0.65 d-1。可溶性有机氮库中的重要组成成分尿素和氨基酸均能显著促进4种海洋微藻的生长;相比较而言,赤潮异弯藻和凯伦藻更加喜好有机氮氨基酸,而球形棕囊藻和角毛藻更加喜好尿素。海洋微藻具备利用有机氮源的能力,无疑扩展了其氮营养来源,在无机氮缺乏而有机氮丰富的水体中,它们在浮游植物群落中更具有竞争优势。     

Concentration Requirement of glycine as nitrogen source for supporting effective growth of certain marine microplanktonic algae

Eighteen species of marine phytoplankton from 9 algal classes were tested under axenic-culture conditions for their capacity to improve phototrophic-growth performance on glycine with increasing concentration of this amino-acid serving as sole nitrogen source. Whereas all these species showed poor-to-no growth on 0.5 mM glycine, 14 species manifested considerable gain in growth-rate and yield at higher concentration levels. The highest level tested (25 mM) was generally not inhibitory and produced the best yields in these cases. Some species (notably Skeletonema costatum) showed marked reduction in the adaptation-lag period with increased glycine concentration, but Chlamydomonas palla required a very long adaptation period, which was little affected by concentration. Dunaliella tertiolecta, Emiliania huxleyi and Chroomonas salina showed sharp (albeit elevated) concentration thresholds for efficient glycine utilization. Rhodomonas lens and two cyanophycean strains, Agmenellum quadruplicatum and Anacystis marina, appeared incapable of successful growth on glycine at all concentrations tested, while the rhodophyte Porphyridium marinum displayed marginal growth. The results were insufficient to draw taxonomically general conclusions on algal-class potential for glycine utilization, but they showed unequivocally that more than 83% of phytoplankton species from 9 algal classes can utilize glycine for growth if the appropriate substrate concentration is provided.     

Marine fungi (Ascomycetes) within and on tests of Foraminifera

Fruiting bodies of higher marine fungi occur within and on tests of foraminiferans on tropical beaches of the Pacific (Australia, Hawaii) and Atlantic Ocean (Belize, Mexico). Ascocarps (fruiting bodies ) of five intertidal species or varieties of the genera Arenariomyces, Corollospora and Lindra colonize foraminiferans in the natural habitat and may contribute to the eventual breakup of the tests. Fungal fruiting structures, which are normally subglobose when developing in other substrates, adjust to the shape of the foraminiferan chambers when growing within the tests. Pure cultures of L. thalassiae var. crassa yielded the same type of irregular fruiting bodies when grown at 30° C on foraminiferan tests as the sole source of nutrients.Smithsonian Contribution No. 174 (Investigations of Marine Shallow-Water Ecosystems Program, Reef and Mangrove Study-Belize)     

费氏中华根瘤菌ntrBC基因突变株的构建及其特性

从费氏中华根瘤菌(Sinorhizobium fredii)HN01基因文库的重组质粒pGXHN300上获得ntrB、ntrC基因完整序列.通过自杀质粒pK18mob同源单交换的方法,分别获得了HN01菌株的ntrB和ntrC基因的突变株GXHNB、GXHNC.功能检测证明GXHNB、GXHNC能以硝酸盐为唯一氮源进行正常生长,但不能以铵源作为唯一氮源进行正常生长.图4表2参15     

Catabolism of trimethylamine by a marine bacterium,Pseudomonas NCMB 1154

Macerated suspensions of Pseudomonas NCMB 1154, grown on trimethylamine as sole nitrogen source, cause the stepwise demethylation of trimethylamine, with the production of ammonia and the occurrence of dimethylamine and methylamine as transient intermediates. The initial demethylation involves a glucose activated, non-oxidative rupture of the methyl-amino linkage, is relatively specific for methyl groups, and is partially inhibited by ATP. The first methyl group is oventually oxidised, but only by whole cells, after removal from the amine molecule. The second and third demethylations involve oxidative rupture of the methyl-amino linkages, with the production of formaldehyde, are less specific with respect to the alkyl groups, are glucose activated, but are not inhibited by ATP. The third and final demethylation reaction is partially inhibited by semi-carbazide.     

纹缟虾虎鱼对Cu~(2+)、Cd~(2+)和氨氮的毒性响应和敏感性分析

以纹缟虾虎鱼为受试生物,分别进行了Cu~(2+)、Cd~(2+)和氨氮为环境因子的急性毒性实验和氨氮慢性暴露实验,结合文献数据分析纹缟虾虎鱼对3种污染物的敏感性。结果表明,Cu~(2+)、Cd~(2+)和氨氮对纹缟虾虎鱼的EC50分别为4.527、40.408和63.182mg·L~(-1)。组织切片结果显示,氨氮暴露能够引起纹缟虾虎鱼肝组织结构退化,组织细胞畸变,其损伤程度随着氨氮浓度的升高而加剧。氨氮暴露对肠管未见明显影响。敏感性分析结果表明,纹缟虾虎鱼对Cu~(2+)、Cd~(2+)和氨氮的累积概率分别为83.33%、96.27%和90.48%,均表现为不敏感。在Cu~(2+)、Cd~(2+)和氨氮对海洋生物的敏感性排名中,纹缟虾虎鱼分别在第31/35、32/32和19/20位。在8~12种海洋鱼类中,纹缟虾虎鱼对上述3种污染物的敏感性都处在较低水平。     

红球菌Chr-9降解吡啶和苯酚的特性

研究了红球菌(Rhodococcus)Chr-9菌株在基础盐培养基中降解吡啶和苯酚的特性,分析了菌株降解苯酚和吡啶间的差异.结果表明,菌株Chr-9能够在72 h内将基础盐培养基中的吡啶(200 mg L-1)和苯酚(200 mg L-1)完全降解,同时利用吡啶和苯酚进行生长.菌株降解吡啶的最适温度为35℃,最适pH为8.0.菌株降解吡啶和苯酚的速度与底物的初始浓度呈负相关;在无其它氮源的基础盐培养基中,菌株能够利用吡啶和苯酚协同生长.图7参12     

Arsenic metabolism in marine bacteria and yeast

Arsenic metabolism was studied for two marine microorganisms, a facultative anaerobic bacterium, Serratia marinorubra, and an obligately aerobic yeast, Rhodotorula rubra. Both were cultivated in media with (⁷⁴As) arsenate (As V), and the products of arsenate metabolism were determined qualitatively. Both the bacterium and the yeast produced arsenite (AS III) and methylarsonic acid [CH₃AsO(OH)₂]. In addition to the foregoing, only the yeast produced dimethylarsinic acid (CH₃)₂AsO(OH) and volatile alkylarsines. In contrast, the bacterium growing anaerobically with cobalamine as a cofactor did not synthesize gaseous forms of arsenic such as methylarsines. Neither organism synthesized arsoniumphospholipids such as those produced by marine phytoplankton or terrestrial fungi. The yeast did not accumulate arsenite, but instead transported some of it into the culture medium and methylated the remainder first to methylarsonic acid and then to dimethylarsinic acid. Finally, the latter compound was methylated further and volatile alkylarsines were formed. In contrast, the bacterium retained all products of arsenate metabolism intracellularly. Both the bacterium and the yeast, therefore, converted relatively toxic arsenate, the most abundant arsenic compound in seawater, to products that were presumably less toxic.     

Development of the ability to take up L-lysine by the diatom Phaeodactylum tricornutum

Freshly harvested cells of Phaeodactylum tricornutum Bohlin grown with nitrate, ammonium or lysine as a sole nitrogen source had a low ability to take up lysine or arginine, but this ability increased when cells were deprived, over 48 h, of either nitrogen or carbon. The effects of nitrogen and carbon deprivation were additive, and the uptake ability was greatest in cells incubated in darkness in nitrogen-free medium. Uptake ability increased in cells illuminated in the presence of 10^-5 M 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU) an inhibitor of photosynthetic electron transport. An inverse relationship between rate of development of the uptake system and rate of photosynthesis was also established. Development of the uptake system was prevented by cycloheximide or by anaerobiosis. Following transfer to a normal nitrate medium, illuminated cells lost the lysineuptake system by dilution as the cells grew. There was a linear and positive correlation between the initial rate of uptake of lysine and the maximum concentration which was maintained in the cells when equilibrium was reached, indicating that transinhibition of lysine uptake may occur and that the extent of this inhibition is related to the size of the internal amino acid pool. The relevance of the findings to the growth of phytoplankton in natural waters is discussed.     

Nitrogen fixation in the rhizosphere of marine angiosperms

High rates of acetylene reduction were observed in systems containing excised rhizomes of the Caribbean marine angiosperms Thalassia testudinum, Syringodium filiforme and Diplanthera wrightii, and the temperate marine angiosperm Zostera marina. For 4 plant and plant-sediment systems the ratio of acetylene reduced/N₂ fixed varied from 2.6 to 4.6. For T. testudinum the estimated rates of nitrogen fixation are in agreement with estimated requirements of the plant for nitrogen. For a typical T. testudinum stand, N₂ fixation is estimated to be 100 to 500 kg N/hectare per year. Numbers of N₂-fixing bacteria in the rhizosphere sediments were roughly 50 to 300 times more abundant than those in the nonrhizosphere sediments, and in both types of sediments were of the same orders as the estimated numbers of heterotrophic aerobes.Canadian IBP Contribution No. 137.     

Population structure of the common sole (<Emphasis Type="Italic">Solea solea</Emphasis>) in the Northeastern Atlantic and the Mediterranean Sea: revisiting the divide with EPIC markers

Spatial and temporal population genetic structures of the common sole, Solea solea, were studied in Northeastern Atlantic and Mediterranean Sea populations, using three polymorphic exon-primed intron-crossing (EPIC) markers. Results demonstrated significant multilocus differentiation among Eastern Mediterranean and a group composed by Western Mediterranean and Atlantic populations (θ = 0.150, P < 0.001), but also suggested unrecorded genetic differentiation of the Adriatic Sea population. No pattern of isolation-by-distance was recorded across the range covered by sampling, from the Kattegat to the Aegean Sea. Conversely to genetically structured Mediterranean populations, Atlantic populations ranging from Denmark to Portugal could be considered as representative of the same panmictic unit (θ = 0.009, not significant). Results further demonstrated stability of multilocus genetic structure among temporarily replicated cohort samples [0+, 1+, subadults] from several coastal and estuarine locations from Bay of Biscay, excepted for the amylase locus Am2B3-2 at one location (Pertuis d’Antioche). Despite coherence of such observed patterns of multilocus differentiation with previous allozymic surveys in sole, and with patterns generally obtained for other marine fish species, single-locus results from EPICs indicated divergent coalescence schemes supporting a complex response to ecology and history of sole’s populations. Results stress the use of nuclear genes such as EPIC markers to investigate population structure, but also historical, demographic, and possibly selective processes in marine fishes.     

Multi-marker estimate of genetic connectivity of sole (Solea solea) in the North-East Atlantic Ocean

A thorough knowledge on the genetic connectivity of marine populations is important for fisheries management and conservation. Using a dense population sampling design and two types of neutral molecular markers (10 nuclear microsatellite loci and a mtDNA cytochrome b fragment), we inferred the genetic connectivity among the main known spawning grounds of sole (Solea solea L.) in the North-East Atlantic Ocean. The results revealed a clear genetic structure for sole in the North-East Atlantic Ocean with at least three different populations, namely the Kattegat/Skagerrak region, the North Sea and the Bay of Biscay, and with indications for a fourth population, namely the Irish/Celtic Sea. The lack of genetically meaningful differences between biological populations within the southern North Sea is likely due to a large effective population size and sufficient connection (gene flow) between populations. Nevertheless, an isolation-by-distance pattern was found based on microsatellite genotyping, while no such pattern was observed with the cytochrome b marker, indicating an historical pattern prevailing in the latter marker. Our results demonstrate the importance of a combined multi-marker approach to understand the connectivity among marine populations at region scales.     

Photosynthetic carboxylating enzymes in Phaeodactylum tricornutum: Assay methods and properties

Rapid freezing (in liquid nitrogen) of the marine diatom Phaeodactylum tricornutum Bohlin followed by thawing permits a convenient and sensitive measurement of the activities of carboxylating enzymes without the need to prepare a cell-free extract. Using this method, the properties of RuDP and PEP carboxylases have been compared with those assayed in cell-free extracts. The most significant difference was in the Michaelis' constants (K _m 's); the values being lower in the freeze/thaw assay. The absolute rate of carbon-dioxide fixation by the enzymes was less than the rate of photosynthesis by the intact alga. Significantly, the activity of PEP carboxylase was comparable (in some experiments, greater) to that of RuDP carboxylase. The significance of this and the possibility of an enzymatic approach to measurements of marine primary productivity are discussed.     

Do plant density, nutrient availability, and herbivore grazing interact to affect phlorotannin plasticity in the brown seaweed Ascophyllum nodosum

Plants have different strategies to cope with herbivory, including induction of chemical defences and compensatory growth. The most favourable strategy for an individual plant may depend on the density at which the plants are growing and on the availability of nutrients, but this has not been tested previously for marine plant–herbivore interactions. We investigated the separate and interactive effects of plant density, nutrient availability, and herbivore grazing on the phlorotannin (polyphenolic) production in the brown seaweed Ascophyllum nodosum. Seaweed plants grown at low or high densities were exposed either to nutrient enrichment, herbivorous littorinid gastropods (Littorina obtusata), or a combination of nutrients and herbivores in an outdoor mesocosm experiment for 2 weeks. Seaweeds grown at a low density tended to have higher tissue nitrogen content compared to plants grown at a high density when exposed to elevated nutrient levels, indicating that there was a density dependent competition for nitrogen. Herbivore grazing induced a higher phlorotannin content in plants grown under ambient, but not enriched, nutrient levels, indicting either that phlorotannin plasticity is more costly when nutrients are abundant or that plants responded to herbivory by compensatory growth. However, there were no significant interactive or main effects of plant density on the seaweed phlorotannin content. The results indicate that plants in both high and low densities induce chemical defence, and that eutrophication may have indirect effects on marine plant–herbivore interactions through alterations of plant chemical defence allocation.