Ecology of Chytridiomycosis in Rainforest Stream Frog Assemblages of Tropical Queensland

Abstract:  In the wet tropics of Queensland, Australia, eight species of stream-dwelling frogs have experienced population declines. Some declines were associated with an emerging infectious disease of amphibians (chytridiomycosis) caused by the fungus Batrachochytrium dendrobatidis. We examined the spatial and temporal pattern of infection prevalence in a sample of frog populations. Infected adults and tadpoles of all species were found, and infections occurred at every site. Infection prevalence varied among species and was always < 10.0% in adults but ranged from 0.75 to 76.0% in tadpoles. In this system tadpoles and adults of some species may act as disease reservoirs, experiencing avirulent infections, whereas other hosts (declining species) experience virulent infections. Infection prevalence was higher during the cool, dry winter season (May to September) and at high elevations (600–800 m), suggesting regulation by environmental conditions, including temperature and precipitation. We found no relationships between infection prevalence and mean body condition, fluctuating asymmetry of hind limbs, population density, or the presence of metamorphosing tadpoles and juvenile frogs. Although it is not certain whether chytridiomycosis was responsible for past frog population declines in the wet tropics of Queensland, the pathogen is now endemic. Our data indicate that at the landscape level, environmental conditions have strong effects on host-pathogen dynamics. These effects interact with species-specific behavior or immune function and may be important underlying determinants of chytridiomycosis epizootics and emergence.     

Long-Term Avifaunal Impoverishment in an Isolated Tropical Woodlot

Abstract:  Long-term (>50 years) extinction patterns and processes in isolated tropical forest patches are poorly understood. Considering that forest fragments are rapidly becoming the common feature of most tropical landscapes, data on the long-term conservation value of such fragments are urgently needed. We report on avifaunal turnover in a tropical woodlot (Bogor Botanical Gardens; 86 ha; 54% native and 46% introduced plants; mean 83,649 visitors/month) that has been surveyed several times before and after its isolation in 1936. By 2004 the original avifaunal richness of this woodlot declined by 59% (97 to 40 species) and its forest-dependent avifauna declined by 60% (30 to 12 species). Large-bodied birds were particularly prone to extinction before 1987, but following this time none of the species traits we studied could be considered predictive of extinction proneness. All seven forest-dependent bird species that attempted to colonize this woodlot by 1987 perished thereafter. Our results show that area reduction, isolation, intense human use, and perverse management (e.g., understory removal) of this patch have probably negatively affected the long-term sustainability of its forest avifauna.     

Avian Community Response to Lowland Tropical Rainforest Isolation: 40 Years of Change at La Selva Biological Station, Costa Rica

Abstract:  Since 1960, most of the forest surrounding the La Selva Biological Station, an intensively studied tropical research facility in Costa Rica, has been converted to agricultural uses. We used quantitative censuses and analysis of previously published categorical abundances to assess changes in the bird community, and we evaluated potential causes of species-specific changes by assessing their association with habitat, diet, participation in mixed-species flocks, and nest type. Approximately the same percentage of species increased as decreased in abundance from 1960 to 1999 (10–20% of all species, depending on method of assessment). Diet was the single most important trait associated with declining species. At least 50% of the species that declined have insectivorous diets. Use of forest habitat and participation in mixed-species flocks were also significant factors associated with declines, but nest type was unrelated to change in abundance. The species that increased in abundance tended to occur in open habitats and have omnivorous diets. These results reinforce the importance of several population risk factors associated with tropical understory insectivory and mixed-species flocking: patchy spatial distribution, low population density, large home range, and dietary specialization. La Selva's protected area (1611 ha), despite a forested connection on one boundary with a higher elevation national park, is apparently too small to maintain at least one major guild (understory insectivores). This first quantitative assessment of bird community change at La Selva highlights the need to intensify study of the mechanisms and consequences of biological diversity change in tropical forest fragments.     

Participatory Approach for Rapid Assessment of Plant Diversity through a Folk Classification System in a Tropical Rainforest: Case Study in Xishuangbanna, China

Abstract:  Rural indigenous people are often very knowledgeable about plant and animal species, including their identification and ecology. The use of indigenous knowledge has increasingly attracted attention in scientific circles. The Dai people, a dominant nationality in southwestern Yunnan, China, have developed their own traditional plant classification system. In a case study in Xishuangbanna, we compared the differences in number of plant species identified between scientific and Dai folk classification. The Dai people identified more than 80% of the plant species, and the correspondence between folk and scientific plant species was 87.7%. Our results indicate that folk plant classification could be used in rapid assessment of plant species in certain regions. The use of folk systems of plant classification for rapid biodiversity assessment will contribute to conservation of both indigenous knowledge and regional biodiversity.     

Effects of Forest Fragmentation on Seed Dispersal and Seedling Establishment in Ornithochorous Trees

Abstract: Habitat fragmentation increases seed dispersal limitation across the landscape and may also affect subsequent demographic stages such as seedling establishment. Thus, the development of adequate plans for forest restoration requires an understanding of mechanisms by which fragmentation hampers seed delivery to deforested areas and knowledge of how fragmentation affects the relationship between seed‐deposition patterns and seedling establishment. We evaluated the dispersal and recruitment of two bird‐dispersed, fleshy‐fruited tree species (Crataegus monogyna and Ilex aquifolium) in fragmented secondary forests of northern Spain. Forest fragmentation reduced the probability of seed deposition for both trees because of decreased availability of woody perches and fruit‐rich neighborhoods for seed dispersers, rather than because of reductions in tree cover by itself. The effects of fragmentation went beyond effects on the dispersal stage in Crataegus because seedling establishment was proportional to the quantities of bird‐dispersed seeds arriving at microsites. In contrast, postdispersal mortality in Ilex was so high that it obscured the seed‐to‐seedling transition. These results suggest that the effects of fragmentation are not necessarily consistent across stages of recruitment across species. Habitat management seeking to overcome barriers to forest recovery must include the preservation, and even the planting, of fleshy‐fruited trees in the unforested matrix as a measure to encourage frugivorous birds to enter into open and degraded areas. An integrative management strategy should also explicitly consider seed‐survival expectancies at microhabitats to preserve plant‐population dynamics and community structure in fragmented landscapes.     

Effects of Local Disturbance of Tropical Forests on Frugivores and Seed Removal of a Small-Seeded Afrotropical Tree

Abstract:  Small-scale, local disturbance of tropical forests, for example from selective logging, is widespread, but its effects on biodiversity and ecosystem function have rarely been studied. In 3 East African tropical rainforests, we investigated the effect of different levels of local forest disturbance on the frugivore community and on tree visitation and fruit removal rates of the small-seeded tree Celtis durandii. We quantified birds and primates in little and heavily disturbed sites, distinguishing between forest specialists, forest generalists, and forest visitors. We quantified frugivorous tree visitors and seed removal rates of C. durandii trees in the same sites. Forest disturbance reduced the species richness and density of the frugivore community and of forest specialists. Frugivorous species and individuals visiting the study trees were reduced significantly, which led to a marginally significant decline in fruit removal by all frugivores and a significant reduction in removal by forest specialists. Reduction in fruit removal by forest specialists was not compensated for by increases in removal by forest generalists or visitors. Results did not differ among the 3 rainforests, which suggests they were consistent at a regional scale. So local forest disturbance led to a loss of frugivores and their seed removal services. This suggests that large-seeded tree species and trees with small fruits are losing seed dispersers. Thus, local forest disturbance appears to have a more general negative impact on frugivores and their seed dispersal services than anticipated previously.     

Body Size Variation of Mammals in a Fragmented, Temperate Rainforest

Abstract:  Body size is perhaps the most important trait of an organism, affecting all of its physiological and ecological processes and, therefore, fundamentally influencing its ability to survive and reproduce in different environments, including those that have been modified by human activities. We tested the hypothesis that anthropogenic transformation of old-growth forest landscapes can result in significant intraspecific changes in body size of resident biotas. We collected data on five species of nonvolant mammals (common deer mouse [Peromyscus maniculatus ], northwestern deer mouse [P. keeni] , southern red-backed vole [Clethrionomys gapperi ], montane shrew [Sorex monticolus] , and Trowbridge's shrew [S. trowbridgii] ) to test whether body size (mass and length) of these species varied across types of land cover (macrohabitats) and along elevational gradients of the fragmented, temperate rainforest of Olympic National Forest (Washington, U.S.A.). We measured 2168 and 1134 individuals for body mass and body length, respectively. Three species ( P. keeni , S. monticolus , and S. trowbridgii ) exhibited significantly different body size among macrohabitats: individuals from fragments were smaller than those in old-growth corridors and those in more extensive stands of old-growth forest. Body size of P. keeni was significantly correlated with elevation along corridors, peaking near the medial reaches of the corridors. The effects of anthropogenic transformations of this landscape of old-growth, temperate rainforest, although not universal among the five species, were significant and rapid—developing in just a few decades following tree harvests. Thus, anthropogenic fragmentation may influence not only the diversity, species composition, and densities of local biotas, but also one of the most fundamental and defining characteristics of native species—their body size.     

Long-Term Landscape Change and Bird Abundance in Amazonian Rainforest Fragments

Abstract:  The rainforests of the Amazon basin are being cut by humans at a rate >20,000 km²/year, leading to smaller and more isolated patches of forest, with remaining fragments often in the range of 1–100 ha. We analyzed samples of understory birds collected over 20 years from a standardized mist-netting program in 1– to 100-ha rainforest fragments in a dynamic Amazonian landscape near Manaus, Brazil. Across bird guilds, the condition of second growth immediately surrounding fragments was often as important as fragment size or local forest cover in explaining variation in abundance. Some fragments surrounded by 100 m of open pasture showed reductions in insectivorous bird abundance of over 95%, even in landscapes dominated by continuous forest and old second growth. These extreme reductions may be typical throughout Amazonia in small (≤10 ha), isolated fragments of rainforest. Abundance for some guilds returned to preisolation levels in 10- and 100-ha fragments connected to continuous forest by 20-year-old second growth. Our results show that the consequences of Amazonian forest loss cannot be accurately described without explicit consideration of vegetation dynamics in matrix habitat. Any dichotomous classification of the landscape into "forest" and "nonforest" misses essential information about the matrix.     

Waterbird Communities and Habitat Relationships in Coastal Pastures of Northern California

We examined waterbird assemblages (diversity, composition, and species' densities) in 20 pastures near Humboldt Bay, California, in relation to habitat characteristics (vegetation height, soil penetrability, water depth), abundance of invertebrates (worms and other invertebrates), and presence of livestock. From October 1991 to May 1992 we observed 29 species and 10,776 birds, most (78%) of which foraged. Nonrandom pasture use by birds resulted in a highly clumped spatial distribution (s²:{ovbar>x} ratio = 42.1). Habitat characteristics of pastures correlated with this nonrandom pattern: waterbird diversity and densities of three sandpiper species and one gull species correlated negatively ( r = −0.61 and r = −0.44 to −0.67, respectively) with vegetation height; densities of two plover species correlated negatively ( r = −0.39 and −0.45) with soil penetrability; and waterfowl densities correlated positively with water depth ( r = 0.97). Species composition varied among pastures. Wading birds used pastures with tall vegetation, shorebirds and gulls frequented short-grass pastures, and waterfowl used flooded pastures of waterbirds and their densities increased in association with livestock.In coastal areas where much intertidal habitat has been reclaimed as postureland, pastures offered valuable habitats to nonbreeding waterbirds. We suggest that grazing in coastal pastures can be used to provide a mosaic of vegetation heights, which would yield greater waterbird diversity as well as higher densities of some species.     

Bushmeat Supply and Consumption in a Tropical Logging Concession in Northern Congo

Abstract: Unsustainable hunting of wildlife for food empties tropical forests of many species critical to forest maintenance and livelihoods of forest people. Extractive industries, including logging, can accelerate exploitation of wildlife by opening forests to hunters and creating markets for bushmeat. We monitored human demographics, bushmeat supply in markets, and household bushmeat consumption in five logging towns in the northern Republic of Congo. Over 6 years we recorded 29,570 animals in town markets and collected 48,920 household meal records. Development of industrial logging operations led to a 69% increase in the population of logging towns and a 64% increase in bushmeat supply. The immigration of workers, jobseekers, and their families altered hunting patterns and was associated with increased use of wire snares and increased diversity in the species hunted and consumed. Immigrants hunted 72% of all bushmeat, which suggests the short‐term benefits of hunting accrue disproportionately to “outsiders” to the detriment of indigenous peoples who have prior, legitimate claims to wildlife resources. Our results suggest that the greatest threat of logging to biodiversity may be the permanent urbanization of frontier forests. Although enforcement of hunting laws and promotion of alternative sources of protein may help curb the pressure on wildlife, the best strategy for biodiversity conservation may be to keep saw mills and the towns that develop around them out of forests.     

Trophic Flexibility and the Persistence of Understory Birds in Intensively Logged Rainforest

Effects of logging on species composition in tropical rainforests are well known but may fail to reveal key changes in species interactions. We used nitrogen stable‐isotope analysis of 73 species of understory birds to quantify trophic responses to repeated intensive logging of rainforest in northern Borneo and to test 4 hypotheses: logging has significant effects on trophic positions and trophic‐niche widths of species, and the persistence of species in degraded forest is related to their trophic positions and trophic‐niche widths in primary forest. Species fed from higher up the food chain and had narrower trophic‐niche widths in degraded forest. Species with narrow trophic‐niche widths in primary forest were less likely to persist after logging, a result that indicates a higher vulnerability of dietary specialists to local extinction following habitat disturbance. Persistence of species in degraded forest was not related to a species’ trophic position. These results indicate changes in trophic organization that were not apparent from changes in species composition and highlight the importance of focusing on trophic flexibility over the prevailing emphasis on membership of static feeding guilds. Our results thus support the notion that alterations to trophic organization and interactions within tropical forests may be a pervasive and functionally important hidden effect of forest degradation. Flexibilidad Trófica y la Persistencia de Aves de Sotobosque en un Bosque Lluvioso Talado Intensivamente     

Plant Succession, Landscape Management, and the Ecology of Frugivorous Birds in Abandoned Amazonian Pastures

From towers constructed at the interface between second-growth forest and an active and an abandoned pasture, we observed inter-habitat movements of fruit-eating birds in eastern Amazônia. The abandoned pasture was composed of grasses and forbs with a scattering of shrubs and small trees. The active pasture contained a low, uniform bed of grass. A total of 47 frugivorous bird species was recorded in the second-growth forest. We observed that 18 of these species frequented the adjacent abandoned pasture but only 3 were found in the adjacent active pasture. Fruit-eating birds flying from second-growth forest typically spent only a few minutes in the abandoned pasture, and their movements were generally restricted to a pasture belt of 1–80 m along the border with the second-growth forest. Most inter-habitat movement occurred during the rainy season, which coincided with a peak in fruit availability in the abandoned pasture. Just three bird species, Ramphocelus carbo, Tachyphonus rufus , and Thraupis episcopus , accounted for an estimated 70% of the total movement of frugivores between the second-growth forest and the abandoned pasture. All three species spent most of their time in the abandoned pasture foraging on shrubs and trees but exhibited differences in their preference for specific habitat elements and in their seed-defecation habits. An understanding of bird behaviors in altered landscapes provides important information to planners and policy makers concerned with protecting regional biodiversity and maintaining landscape integrity. This research provides a rationale for placing limits on the size of clearings in the Brazilian Amazon.     

Effects of Self-Guided Snorkeling Trails on Corals in a Tropical Marine Park

Abstract: Underwater trails are intended as interpretative tools in marine parks, but concentrating divers and snorkelers in defined areas may negatively affect the surrounding environment. We examined spatial and temporal patterns in the effects of use of underwater trails on coral reef flats in the Great Barrier Reef Marine Park, Australia. Changes in benthic assemblages were assessed on two new trails used by snorkelers, two unused (control) trails, and two undisturbed areas. Total percent coral cover, numbers of broken colonies, and living coral fragments were counted 6 months before and 6 months after the new trails began to be used. Spatial patterns of effects around concentrated nodes of use were determined by stratified sampling around and away from the interpretative signs within each trail. Despite comparatively low levels of use (approximately 15 snorkelers per trail per week), snorkelers caused significant damage to corals along the trails. Branching corals (non- Acropora branching corals and Millepora spp.) were most affected. More damage occurred near the interpretative signs than elsewhere on the trails. The numbers of broken branches and damaged coral colonies in the snorkeling trails increased rapidly but stabilized within 2 months of the commencement of use. There was no significant change in overall benthic assemblages within the trails after 6 months of use by snorkelers. Although concentrating snorkelers within confined trails caused increased damage to corals, the effects can be mitigated by appropriate design and placement of the trails and by managing the behavior of snorkelers. Interpretative information should warn users about the damage they may cause when swimming along the trails. Managing the behavior of snorkelers in the water is likely to be more effective in reducing damage than simply applying fixed limits to the amount of use the trails receive.