High genetic diversity of the symbiotic dinoflagellates in the coral Pocillopora meandrina from the South Pacific

Symbioses between dinoflagellates in the genus Symbiodinium (commonly referred to as zooxanthellae) and scleractinian corals are an essential feature for the maintenance of coral reefs. The fine-scale diversity and population structure of the zooxanthellae inhabiting the coral Pocillopora meandrina, a major reef building species in Polynesia, was examined. We used two polymorphic microsatellites to study seven populations from the South Pacific, whose host structuring has been previously investigated. The symbionts of P. meandrina showed high levels of diversity, with more than one zooxanthella genotype being identified in most of the host individuals. Genetic differentiation between symbiont populations was detected at a large scale (2,000 km) between the Tonga and the Society Archipelagos. Within the Society Archipelago, the two most remote populations (Tahiti and Bora-Bora; 200 km apart) were only weakly differentiated from each other. Statistical tests demonstrated that the symbiont genetic structure was not correlated with that of its host, suggesting that dispersal of the symbionts, whether they are transported within a host larva or free in the water, depends mainly on distance and water currents. In addition, the data suggests that hosts may acquire new symbionts after maternal transmission, possibly following a disturbance event. Lastly, the weak differentiation between symbiont populations of P. verrucosa and P. meandrina, both from Moorea, indicated that there was some host-symbiont fine-scale specificity detectable at the genetic resolution offered by microsatellites.     

Carbon metabolism and strobilation in Cassiopea andromedea (Cnidaria: Scyphozoa): Significance of endosymbiotic dinoflagellates

Scyphopolyps and scyphomedusae of Cassiopea andromeda Forskål (Cnidaria, Scyphozoa) containing dinoflagellate endosymbionts (zooxanthellae) were investigated for rates and pathways of carbon fixation. Photosynthesis by the algae, accounting for 80 and 15 mol C h^-1 on a dry weight basis in medusae and polyps, respectively, by far exceeds dark incorporation of inorganic carbon by the intact association. Photosynthetic carbon fixation is operated via C₃ pathway of carbon reduction. DCMU-treatment (1×10^-6 M and 1×10^-5 M) completely inhibits light-dependent carbon assimilation. Major photosynthates presumably involved in a metabolite flow from algal symbionts to animal tissue are glycerol and glucose. A total of 5–10% net algal photosynthate appears to be seleased in vivo to the host. This is probably less than the energy supply ultimately required for the nutrition of the polyps and medusae. The presence of zooxanthellae proved to be indispensable for strobilation in the scyphopolyps. However, photosynthesis by algal symbionts as well as photosynthate release is obviously not essential for the initiation of ephyrae as is shown by DCMU-treatment, culture in continous darkness, and aposymbiotic controls. It is therefore concluded that strobilation is supported, but not triggered by algal photosynthetic activity. The induction of strobilation thus seems to depend on a more complex system of regulation.     

The relative importance of host-plant genetic diversity in structuring the associated herbivore community

Recent studies suggest that intraspecific genetic diversity in one species may leave a substantial imprint on the surrounding community and ecosystem. Here, we test the hypothesis that genetic diversity within host-plant patches translates into consistent and ecologically important changes in the associated herbivore community. More specifically, we use potted, grafted oak saplings to construct 41 patches of four saplings each, with one, two, or four tree genotypes represented among the host plants. These patches were divided among two common gardens. Focusing first at the level of individual trees, we assess how tree-specific genotypic identity, patch-level genetic diversity, garden-level environmental variation, and their interactions affect the structure of the herbivore community. At the level of host-plant patches, we analyze whether the joint responses of herbivore species to environmental variation and genetic diversity result in differences in species diversity among tree quartets. Strikingly, both species-specific abundances and species diversity varied substantially among host-tree genotypes, among common gardens, and among specific locations within individual gardens. In contrast, the genetic diversity of the patch left a detectable imprint on local abundances of only two herbivore taxa. In both cases, the effect of genetic diversity was inconsistent among gardens and among host-plant genotypes. While the insect community differed significantly among individual host-plant genotypes, there were no interactive effects of the number of different genotypes within the patch. Overall, additive effects of intraspecific genetic diversity of the host plant explained a similar or lower proportion (7-10%) of variation in herbivore species diversity than did variation among common gardens. Combined with the few previous studies published to date, our study suggests that the impact of host-plant genetic diversity on the herbivore community can range from none to nonadditive, is generally low, and reaches its most pronounced impact at small spatial scales. Overall, our findings strengthen the emerging view that the impacts of genetic diversity are system, scale, and context dependent. As the next step in community genetics, we should then start asking not only whether genetic diversity matters, but under what circumstances its imprint is accentuated.     

Variation among congeneric dinoflagellates from the northeastern United States and Canada

Relationships among dinoflagellates of the genus Alexandrium (=Protogonyaulax) from Long Island, New England, USA, and northeastern Canada were investigated between 1983 and 1987 using enzyme electrophoresis. A relative lack of heterogeneity among toxic isolates was observed despite large geographic separations of source populations. This observation is in marked contrast to observations on toxic members of this genus from the west coast of Canada and the United States. These different enzyme variability patterns support the proposal that dispersal of toxic strains in the east from a common source has occurred recently, presumably from established populations in northern Maine, USA, or Canada. Non-toxic strains from the study area were only distantly related to toxic isolates, consistent with their different morphology and separate species designations. One non-toxic isolate from a different region, that is conspecific with a number of the toxic strains, was more similar to these isolates than to other non-toxic clones.     

High genetic relatedness among nestmate queens in the polygynous ponerine ant Gnamptogenys striatula in Brazil

Gnamptogenys striatula is a polygynous ant species, in which all workers are potentially able to mate. The reproductive status, relatedness and pedigree relationships among nestmate queens and winged females in a Brazilian population were investigated. We collected all the sexual females of 12 colonies (2–44 queens per colony, plus 2–18 winged females in 3 colonies). Dissections revealed that 98% of the queens were inseminated and that the queens in the most polygynous colonies did not lay equal numbers of eggs. The sexual females and a sample of the population were genotyped using eight microsatellite markers. Relatedness among nestmate queens was among the highest recorded to date (0.65±0.25), and tests of pedigree relationship showed that they were likely to be full-sisters, and sometimes cousins. Mated winged females were always full-sisters, the estimated genetically effective queen numbers were low and tests of pedigree relationship showed that only a few queens in the colony could be the mothers. These results suggest that the high queen-queen relatedness in polygynous colonies of G. striatula is maintained by an unusual mechanism: winged females are mostly produced by only one or a few queens, and these groups of full-sisters are recruited back into their original nest after mating. Received: 26 November 1999 / Revised: 7 September 2000 / Accepted: 7 September 2000     

High seagrass diversity and canopy-height increase associated fish diversity and abundance

Seagrass species function as typical foundation species that unifies most ecosystem processes. This ecosystem role depends largely on the morphological characteristics and structural complexity of seagrass beds, including their ecological importance for fish species. This study examined relationships between seagrass bed characteristics and associated fish communities in mixed seagrass beds. Correspondence analysis (CA) and canonical correlation analysis (CCoA) were performed to estimate relationships for individual seagrass bed characteristics. The CCoA results revealed that species richness and three-dimensional structure of seagrass had great effect on the biomass and richness of the associated fish community. The CA results revealed that the relative importance of seagrass bed characteristics differed among fish functional groups including fishes appearing on the surface of, inside, and on the bottom of seagrass beds. The fishes found on the surface of the beds preferred beds with low seagrass biomass and high three-dimensional structure, those inside the beds preferred beds with high seagrass biomass and high three-dimensional structure, and those on the bottom of the beds preferred locations with low seagrass biomass and low three-dimensional structure. The results of this study provide compelling evidence that seagrass beds with high species diversity and high three-dimensional structure, but intermediate biomass, may provide the great benefit to the associated fish community. Such niche complementarity among fishes may be a process facilitated by seagrass diversity for secondary production as an ecosystem functioning.     

The consequences of genetic diversity in competitive communities

Several lines of evidence suggest that the species diversity and composition of communities should depend on genetic diversity within component species, but there has been very little effort to directly assess this possibility. Here I use models of competition among genotypes and species to demonstrate a strong positive effect of the number of genotypes per species on species diversity across a range of conditions. Genetic diversity allows species to respond to selection imposed by competition, resulting in both functional convergence and divergence among species depending on their initial niche positions. This ability to respond to selection promotes species coexistence and contributes to a reduction in variation in species composition among communities. These models suggest that whenever individual fitness depends on the degree of functional similarity between a focal individual and its competitors, genetic diversity should promote species coexistence; this prediction is consistent with the few relevant empirical data collected to date. The results point to the importance of considering the genetic origin and diversity of material used in ecological experiments and in restoration efforts, in addition to highlighting potentially important community consequences of the loss of genetic diversity in natural populations.     

Loss of genetic diversity in Harpacticoida near offshore platforms

Offshore oil and gas production platforms can be a source of chronic stress that could lead to sublethal impacts on resident benthic organisms. In June 1993 and January 1994, genetic diversity of Harpacticoida (Copepoda) living proximal to operating, offshore platforms in the Gulf of Mexico was estimated to test if platforms are associated with strong selective pressures. Because harpacticoids have short generation times and direct benthic development, they are suitable organisms for examining population responses. Genetic diversity was estimated by comparing restriction fragment length polymorphisms generated from mitochondrial DNA amplified by the polymerase chain reaction on individuals of five species (Cletodes sp., Enhydrosoma pericoense, Normanella sp., Robertsonia sp., and Tachidiella sp.). Populations living at Near regions (stations<50 m from a platform) had significantly less haplotype diversity than populations of the same species living at Far regions (stations>3 km from a platform). The levels of haplotype diversity exhibited by the Far populations were similar at three different platforms located hundreds of kilometers apart. The differences in haplotype diversity between Near and Far regions were the result of a higher proportion of dominant haplotypes, and a loss of less common haplotypes. Haplotypic diversity was inversely correlated with a multivariate measurement of levels of sediment contaminants. The pattern of haplotype diversity on the Gulf of Mexico continental shelf seems to consist of a uniform level of haplotype diversity, punctuated by islands of lower diversity around oil and gas platforms. The selective pressures that lead to a loss of genetic diversity may be the result of contaminants, other differences in the physico-chemical environment, or disturbance in general.     

Green and blue fluorescing dinoflagellates in Bahamian waters

At three stations in Bahamas waters, in 1989, 15 to 30% of all the dinoflagellates >20µm diameter observed in near-surface waters fluoresced green under blue excitation light, 55 to 66% fluoresced red, and the remainder did not fluoresce at all. The abundance of these green-fluorescing dinoflagellates ranged from ca 5 to 10 cells l^–1 at the study sites. Under UV excitation, however, the dinoflagellates had a blue to blue-green appearance. Almost all the blue-green fluorescing dinoflagellates appeared to be heterotrophic, except for one species,Phalacroma rapa Stein, which also contained red-fluorescing (under blue light) chlorophylla. The emission spectra from all species examined were of three basic types. Type 1 typically had two fluorescence emission peaks (ca 440 and ca 510 nm). Type 2 spectra possessed one sharp peak at 495 nm. Spectra belonging to Type 3 had a broad peak around 470 to 480 nm. The green fluorescence thus is likely caused by different substances in individual species. The attempt to reconstitute observed spectra with nicotinamide adenine dinucleotide (NADH) and riboflavin 5-phosphate (FMN) solutions was unsuccessful.     

喀斯特地区白三叶形态和遗传多样性研究

白三叶（Trifolium repens）的形态学特征随利用年限的增加而进化,单株叶数、生长点数、中叶长、中叶长宽比以及种群内个体之间变异性随着年限的增加而增加,而叶层高度、中叶宽则下降。三个不同年龄草地的平均单株叶质量、根质量、地上生物量、地上生物量与地下生物量的比值等指标数值接近,差异不显著。但是,与茎有关的指标如茎质量等差异显著,匍匐茎生物量随年限的增加而增加,以回避动物采食等干扰,并有利于占据动态空斑而增加种群的持久性。100年白三叶的等位基因数没有20年的高,意味着年限越长的种群以少数大克隆体占优势。     

Hidden genetic diversity in a key model species of coral

A total of 43 colonies of the scleractinian coral Pocillopora damicornis from lagoonal and reef slope sites in the western Indian Ocean (WIO) region were genetically characterised at one nuclear and two mitochondrial sequence markers and six microsatellite loci. Both mitochondrial and microsatellite data support the existence of two reciprocally monophyletic clusters (F- and NF-types) and provide evidence of the existence of two cryptic species of P. damicornis on reefs in WIO region and put current morphological delineation and geographical boundaries of P. damicornis and Pocillopora molokensis into question. The results add to ongoing studies on the phylogeny and phylogeography within the genus Pocillopora, which all point towards a range of unresolved morphological and molecular species boundaries. Nuclear phylogenies derived from the present and previously published sequences show evidence for incomplete lineage sorting and/or introgressive hybridisation between Pocillopora morphospecies. However, the two WIO types largely remain in separate clusters, further supporting the theory that these represent two different species.     

Incorporating differences between genetic diversity of trees and herbaceous plants in conservation strategies

Reviews that summarize the genetic diversity of plant species in relation to their life history and ecological traits show that forest trees have more genetic diversity at population and species levels than annuals or herbaceous perennials. In addition, among-population genetic differentiation is significantly lower in trees than in most herbaceous perennials and annuals. Possible reasons for these differences between trees and herbaceous perennials and annuals have not been discussed critically. Several traits, such as high rates of outcrossing, long-distance pollen and seed dispersal, large effective population sizes (N_e), arborescent stature, low population density, longevity, overlapping generations, and occurrence in late successional communities, may make trees less sensitive to genetic bottlenecks and more resistant to habitat fragmentation or climate change. We recommend that guidelines for genetic conservation strategies be designed differently for tree species versus other types of plant species. Because most tree species fit an LH scenario (low [L] genetic differentiation and high [H] genetic diversity), tree seeds could be sourced from a few populations distributed across the species’ range. For the in situ conservation of trees, translocation is a viable option to increase N_e. In contrast, rare herbaceous understory species are frequently HL (high differentiation and low diversity) species. Under the HL scenario, seeds should be taken from many populations with high genetic diversity. In situ conservation efforts for herbaceous plants should focus on protecting habitats because the typically small populations of these species are vulnerable to the loss of genetic diversity. The robust allozyme genetic diversity databases could be used to develop conservation strategies for species lacking genetic information. As a case study of reforestation with several tree species in denuded areas on the Korean Peninsula, we recommend the selection of local genotypes as suitable sources to prevent adverse effects and to insure the successful restoration in the long term.     

Structural organisation,transfer and biological fate of endosymbiotic bacteria in gutless oligochaetes

From differences in size and structure, it appears there are two species of gram-negative bacteria in the gutless oligochaetes Phallodrilus leukodermatus and P. planus from Bermuda. A non-random, differentiated and consisten distribution pattern of the extracellular bacteria along the length of the worm's body underlines the regulated nature of the bacterial colonization. This emerges also from studies on the transfer of the bacteria between host generations: exceptional for oligochaetes, eggs are deposited singly in a sticky mucus sheath and not together in a cocoon. They become infected immediately at oviposition, apparently by intrusion from large stores of bacteria in a genital pad abutting the female pores. During ontogenesis, a balance is established between extracellular, active bacteria and intracellular lytic forms enclosed in vacuoles by the epidermal cells. In early developmental stages, lytic bacteria prevail, but older worms harbour mainly extracellular prokaryotes underneath their cuticle. The thick epidermis/cuticle complex is differentiated in regular zones with a progressive trend towards enclosing and digesting bacteria intracellularly in the deeper layers. These are the first results on the transfer and biological fate of endosymbiotic bacteria living in animals from sulfide biotopes.     

Colony genetic diversity affects task performance in the red ant Myrmica rubra

High relatedness and low genetic diversity among individuals in a group is generally considered crucial to the evolution of cooperative behaviour. However, in about a third of social insect species, intracolonial genetic diversity is increased because of derived polyandry (multiple mating by queens) and/or polygyny (multiple reproductive queens). Several studies have shown that increased intracolonial genetic diversity can enhance task performance in honey bees, but evidence of such effect in other social insects is still lacking. Why increased genetic diversity has evolved in some, but not all species, is a fundamental question in sociobiology. In this study, we investigated the effect of intracolonial genetic diversity on the task of nest migration, using the facultatively polyandrous and polygynous red ant Myrmica rubra. Genetic diversity significantly affected migration speed, but its effects were context dependent. Migration speed correlated positively with genetic diversity in one experiment in which migrations were into a known nest site, due to quicker transfer of brood into the new nest once consensus was reached. However, in a another experiment in which migration included scouting for new nest sites, migration speed correlated negatively with genetic diversity, due to slower discovery of new nest sites and slower transfer of brood into the new nest. Our results show for the first time that genetic diversity affects task performance in a social insect other than the honeybee, but that it can produce contrasting effects under different conditions.     

Population and species diversity fluctuations in a rocky intertidal community relative to severe aerial exposure and sediment burial

From a series of 10 quarterly assessment between October 1975 and May 1978 (inclusive), fluctuations in abundance were determined for macroinvertebrates and macrophytes of a rocky intertidal community on Santa Cruz Island, California, USA. During afternoon low tides in late fall and winter of the first 2 yr of study, organisms of the upper and middle intertidal zones were subjected to prolonged aerial exposure. Many species there tolerated this exposure, but die-backs occurred for a barnacle (Chthamalus fissus/C. dalli) and several algae (Endocladia muricata, Pelvetia fastigiata f. gracilis, Corallina officinalis var. chilensis, Corallina vancouveriensis, Cylindrocarpus rugosus and Codium fragile). These die-backs were succeeded by blooms of Ulva californica and Porphyra perforata. In the upper and middle intertidal zones, the major cover organisms that could tolerate prolonged aerial exposure were disproportionately prevalent and appeared to be maintained by the periodic repression of species intolerant to such exposure. In February 1978, heavy rainfall caused sediment inundation of the middle and lower intertidal zones. This event was followed by declines in abundance of a barnacle (Tetraclita rubescens) and several algae (Pelvetia fastigiata f. gracilis and corallina spp.). Shannon-Wiener H species diversity fluctuated from a high in October to a low the following May during both 1975–1976 and 1976–1977 in conjunction with the period of increased daytime aerial exposure in late fall and winter. A further decline in diversity following sediment inundation in February 1978 contributed to a long-term trend of declining H species diversity (3.06 in October 1975 to 1.87 in May 1978). We hypothesize that predictable late fall to winter aerial exposure stresses, in combination with a random physical disturbance (sediment burial), exceeded an optimal intermediate level of disturbance predicted for maximal species diversity.     

外来入侵物种的基因签名及其遗传多样性聚类分析

密码子的使用频率分布能够反映一定的生物特性,因而可作为一种基因签名。本文使用CGR方法来研究外来入侵物种不同组织序列的基因签名及遗传多样性聚类分析,首先得出了刺花莲子草(Alternanthera pungens),紫茎泽兰(Ageratina adenophora),水葫芦(Eichhornia crassipes),微甘菊(Mikania micrantha),土荆芥(Chenopodium ambrosioides),一枝黄花(Solidago canadensis)等6种外来入侵植物的31条序列核苷酸字串长k=1到k=6的情况,并选取k=3,即基因序列的密码子,作为生物特性的一个重要表达。并且构造序列间的CGR欧式距离,进而对外来入侵植物序列遗传多样性进行了聚类分析。通过对所获得的6种外来入侵植物的31条序列的基因签名,得出如下结果：CGR是一种简便且计算量小的方法,且基于CGR方法的基因签名,具有典型的生物特性;入侵植物的基因序列在密码子的使用上是非均衡的,且物种亲缘关系近的,则基因签名相似越高;而且基因签名也揭示出了密码子的第三位碱基偏好使用碱基T的现象,与一般物种密码子第三位碱基偏好G/C情况有强烈反差。此外,从获得的6个物种的31条序列聚类谱系图可以直观看出,入侵植物间存在着一定的亲缘关系,遗传多样性较丰富。由于我们所建立的基于CGR方法的基因签名,不仅能够反映植物特性和进化关系,而且能揭示序列中密码子和碱基的偏好使用情况,因而该方法有利于对外来入侵物种的遗传多样性分析、风险评估及预防控制等提供科学依据。     

Extreme genetic diversity and temporal rather than spatial partitioning in a widely distributed coral reef fish

Mitochondrial control region (HVR-1) sequences were used to identify patterns of genetic structure and diversity in Naso vlamingii, a widespread coral reef fish with a long evolutionary history. We examined 113 individuals from eight locations across the Indo-Pacific Ocean. Our aims were to determine the spatial scale at which population partitioning occurred and then to evaluate the extent to which either vicariance and/or dispersal events have shaped the population structure of N. vlamingii. The analysis produced several unexpected findings. Firstly, the genetic structure of this species was temporal rather than spatial. Secondly, there was no evidence of a barrier to dispersal throughout the vast distribution range. Apparently larvae of this species traverse vicariance barriers that inhibit inter-oceanic migration of other widespread reef fish taxa. Thirdly, an unusual life history and long evolutionary history was associated with a population structure that was unique amongst coral reef fishes in terms of the magnitude and pattern of genetic diversity (haplotype diversity, h = 1.0 and nucleotide diversity π = 13.6%). In addition to these unique characteristics, there was no evidence of isolation by distance (r = 0.458, R ² = 0.210, P = 0.078) as has also been shown for some other widespread reef species. However, some reductions in gene flow were observed among and within Ocean basins [Indian–Pacific analysis of molecular variance (AMOVA), Φ _st = 0.0766, P < 0.05; West Indian–East Indian–Pacific AMOVA Φ _st = 0.079, P < 0.05]. These findings are contrasted with recent studies of coral reef fishes that imply a greater degree of spatial structuring in coral reef fish populations than would be expected from the dispersive nature of their life cycles. We conclude that increased taxon sampling of coral reef fishes for phylogeographic analysis will provide an extended view of the ecological and evolutionary processes shaping coral reef fish diversity at both ends of the life history spectrum.     

Local variation of within-host clonal diversity coupled with genetic homogeneity in a marine trematode

Despite their ubiquity and importance to intertidal ecosystems, information is currently lacking regarding the genetic diversity of trematode parasites within coastal organisms and the distribution of their genetic variation among intertidal habitats. In this study, we quantified the clonal diversity of the coastal marine trematode Maritrema novaezealandensis within Zeacumantus subcarinatus snail hosts from three coastal bays in Otago Harbour, New Zealand, using five microsatellite loci to determine if differences exist in the frequency of occurrence of multi-clone infections. In addition, we examined gene flow among M. novaezealandensis collected from the three bays. The frequency of mixed-clone infections varied fourfold among bays and no genetic differentiation was detected among intertidal bays. Across the coastal bays studied, M. novaezealandensis comprises a single population that is potentially infecting multiple Z. subcarinatus populations with varying life history traits.