Habitat and population modelling of roe deer using an interactive geographic information system

Management of German roe deer (Capreolus capreolus) populations is a challenge for wildlife managers and foresters because population densities are difficult to estimate in forests and forest regeneration can be negatively affected when roe deer density is high. We describe a model to determine deer population densities compatible with forest management goals, and to assess harvest rates necessary to maintain desired deer densities. A geographic information system (GIS) was used to model wildlife habitat and population dynamics over time. Our model interactively incorporates knowledge of field biologists and foresters via a graphical user interface (GUI). Calibration of the model with deer damage maps allowed us to evaluate density dependence of a roe deer population. Incorporation of local knowledge into temporally dynamic and spatial models increases understanding of population dynamics and improves wildlife management.     

The structure of plankton communities of the Indian Ocean

Species diversity and trophic structure of plankton communities have been considered as most important biological features. The Fisher () and Simpson () indices and the information index H=- pi log₂ pi (Margalef) were used for evaluation of species diversity. The indices have been calculated within the group of filter feeders by numbers ( and H) and biomass ( and H) of the species; the best results were obtained in the latter case. The index H=- pi log₂ pi is proposed for the quantitative evaluation of trophic structure, where a portion of an individual trophic group is taken as pi. The plankton material was collected by the R.V. Vityaz in the northern Indian Ocean in January through February, 1960. Analysis of characteristics of zooplankton distribution, species and trophic diversity in connection with characteristics of the water regime resulted in the definition of 3 types of the plankton communities: (a) those in intensive divergence zones; (b) those in poor divergence zones; (c) those in regions with stable water stratification or with feebly marked convergence, distiguished by different values of biomass, species diversity, and trophic group ratios.     

Influence of oceanic factors on long-distance movements of loggerhead sea turtles displaced in the southwest Indian Ocean

The routes of five satellite-tracked loggerhead turtles (Caretta caretta), subjected to an experimental translocation away from their usual migratory routes, have been analysed in relation to the concurrent oceanographic conditions. Remote sensing data on sea surface temperature and height anomalies, as well as trajectories of surface drifters were used, to get simultaneous information on the currents encountered by the turtles during their long-range oceanic movements. Turtles mostly turned out to move in the same direction as the main currents, and their routes were often influenced by circulation features they encountered. A comparison between turtle ground speeds with that of drifters shows that in several instances, the turtles did not drift passively with the currents but contributed actively to the overall movement. Two turtles embarked on an oceanic crossing, probably induced by seasonal changes in surface temperatures, a crossing that was largely determined by the main currents existing in the area.     

Parasites and headless chaetognaths in the Indian Ocean

Typhloscolecid polychaetes, assigned to the genera Typhloscolex (Typhloscolex muelleri) and Travisiopsis (Travisiopsis dubia), feeding on chaetognaths are reported for the first time from the Indian Ocean. These parasitic/predatory polychaetes cause decapitation in the chaetognath Flacisagitta enflata, either by eating the head or by causing injuries to the neck or body. Data from eastern Africa to western India showed a peak of polychaete infestation and decapitation of F. enflata in the Seychelles. A 5% peak occurrence (turnover rate is unknown) of decapitated individuals indicates that this parasitism/predation may have an important impact on local F. enflata populations. The harpacticoid copepod Microsetella norwegica was found feeding on the head and the reproductive organs of F. enflata. Therefore, this copepod may cause both decapitation and castration. Flatworm parasites are reported from the body cavity of F. enflata. Digeneans probably belonging to the genera Aphanurus, Parahemiurus, Accacladocoelium and Opechona, along with the accacoeliid Cercaria owreae and didymozoid metacercariae, were found. Cestode larvae were also recovered. No nematodes were found inside chaetognaths in this study.Communicated by O. Kinne, Oldendorf/Luhe     

Seamount endemism questioned by the geographic distribution and population genetic structure of marine invertebrates

Previous studies have suggested that the high diversity associated with the Norfolk seamounts (Southwest Pacific) could reflect endemism resulting from limited dispersal due to hydrological phenomena. Crustaceans of the family Galatheidae are thoroughly studied in the New Caledonia economic zone permitting the analysis of species distribution pattern between the New Caledonia slope and Norfolk ridge seamounts. This analysis has shown that, qualitatively, the same species are sampled on seamounts and on the New Caledonia slope. Local endemism was never detected. However, on each seamount, and therefore on a small surface, a very high number of species are usually sampled, suggesting that seamounts are biodiversity hot spots. Then, to evaluate whether the seamounts constitute patches of isolated habitat, we explore the pattern of genetic diversity within several species of crustaceans and gastropods. Analysis of the intra-specific genetic structure using the mitochondrial marker COI reveals that populations of two Galatheidae species (Munida thoe and Munida zebra), polymorphic for this marker, are genetically not structured, both among seamounts and between the seamounts and the island slope. The genetic structure over a similar sampling scheme of two Eumunida species (Chirostylidae, the sister family of Galatheidae) and a planktotrophic gastropod (Sassia remensa) reveals a similar pattern. Population structure is observed only in Nassaria problematica, a non-planktotrophic gastropod with limited larvae dispersal. Thus, the limitation of gene flow between seamounts appears to be observed only for species with limited dispersal abilities. Our results suggest that the Norfolk seamounts rather than functioning as areas of endemism, instead, may be highly productive zones that can support numerous species in small areas.     

Determining the drivers of population structure in a highly urbanized landscape to inform conservation planning

Understanding the environmental contributors to population structure is of paramount importance for conservation in urbanized environments. We used spatially explicit models to determine genetic population structure under current and future environmental conditions across a highly fragmented, human‐dominated environment in Southern California to assess the effects of natural ecological variation and urbanization. We focused on 7 common species with diverse habitat requirements, home‐range sizes, and dispersal abilities. We quantified the relative roles of potential barriers, including natural environmental characteristics and an anthropogenic barrier created by a major highway, in shaping genetic variation. The ability to predict genetic variation in our models differed among species: 11–81% of intraspecific genetic variation was explained by environmental variables. Although an anthropogenically induced barrier (a major highway) severely restricted gene flow and movement at broad scales for some species, genetic variation seemed to be primarily driven by natural environmental heterogeneity at a local level. Our results show how assessing environmentally associated variation for multiple species under current and future climate conditions can help identify priority regions for maximizing population persistence under environmental change in urbanized regions.     

Distribution of marine cladocerans in the Indian Ocean

Cladocera of the Indian Ocean have been studied, on the basis of samples collected during the International Indian Ocean Expedition (IIOE). Out of a total of 1927 samples, 552 contained Cladocera. Although the distribution of this group is mainly coastal, one species, Evadne tergestina, has been found in oceanic waters also, where it may establish seasonal populations. Evadne spinifera was recorded off the Australian and South African coasts in the southern hemisphere, and in the Northeastern part of the Arabian Sea coastal waters in the northern hemisphere. Podon polyphemoides was reported from a single station in South African waters. Penilia avirostris was found in coastal waters throughout the Indian Ocean. Short-term distribution patterns of E. tergestina and P. avirostris are discussed. The possible value of this group as food for pelagic fishes has been indicated. This work makes clear that adequate sampling in space and time is required along the Continental Shelf of the Indian Ocean in order to obtain more comprehensive information on this group.Visiting Scientist at Indian Ocean Biological Centre, Cochin, India under UNESCO contract SC/2077/70-20579.     

Ranging patterns of bottlenose dolphins living in oceanic waters: implications for population structure

Very little is known about the ecology of common bottlenose dolphins (Tursiops truncatus) living in oceanic waters. This study investigated the ranging and residence patterns of bottlenose dolphins occurring in the Azores (Portugal), the most isolated archipelago in the North Atlantic. Data were collected during standardized boat-based surveys conducted over a 6-year period in an area of approximately 5,400 km² (main study area). To investigate the extent of movements of individual animals, non-systematic surveys were also conducted outside this area. Only 44 individuals out of 966 identified were frequently sighted within and between years. The remaining individuals were either temporary migrants from within or outside the archipelago, or transients. Resident dolphins showed strong geographic fidelity to the area. Long-distance movements (of almost 300 km), consistent with foraging or exploratory trips, were observed among non-resident dolphins. Home range size was estimated for 31 individuals sighted ≥10 times. Range areas of these dolphins varied in size and location, but considerable overlap was observed in the areas used, suggesting the absence of habitat partitioning between resident and non-resident dolphins. Estimates of home range size of bottlenose dolphins in the Azores were found to be considerably larger than those previously reported for this species. It is hypothesized that dolphins living in the Azores carry out extensive movements and have large home ranges in response to the lower density and patchy distribution of prey compared to other areas. The extensive ranging behaviour and the lack of territoriality provide an opportunity for interbreeding between dolphins associated with different islands, thus preventing genetic differentiation within the population of the Azores.     

Ranging patterns of bottlenose dolphins living in oceanic waters: implications for population structure

Very little is known about the ecology of common bottlenose dolphins (Tursiops truncatus) living in oceanic waters. This study investigated the ranging and residence patterns of bottlenose dolphins occurring in the Azores (Portugal), the most isolated archipelago in the North Atlantic. Data were collected during standardized boat-based surveys conducted over a 6-year period in an area of approximately 5,400 km² (main study area). To investigate the extent of movements of individual animals, non-systematic surveys were also conducted outside this area. Only 44 individuals out of 966 identified were frequently sighted within and between years. The remaining individuals were either temporary migrants from within or outside the archipelago, or transients. Resident dolphins showed strong geographic fidelity to the area. Long-distance movements (of almost 300 km), consistent with foraging or exploratory trips, were observed among non-resident dolphins. Home range size was estimated for 31 individuals sighted ≥10 times. Range areas of these dolphins varied in size and location, but considerable overlap was observed in the areas used, suggesting the absence of habitat partitioning between resident and non-resident dolphins. Estimates of home range size of bottlenose dolphins in the Azores were found to be considerably larger than those previously reported for this species. It is hypothesized that dolphins living in the Azores carry out extensive movements and have large home ranges in response to the lower density and patchy distribution of prey compared to other areas. The extensive ranging behaviour and the lack of territoriality provide an opportunity for interbreeding between dolphins associated with different islands, thus preventing genetic differentiation within the population of the Azores.     

Habitat structure,population abundance and the opportunity for selection on body weight in the amphipodEogammarus oclairi

The importance of oyster-shell habitat-characteristics (depth of the shell layer or degree of fragmentation) to the amphipodEogammarus oclairi were studied in Grays Harbor estuary (Washington, USA) in regard to their effect on local density ofE. oclairi, the risk of predation by juvenile Dungeness crabsCancer magister, and the opportunity for selection on body weight during pairing.E. oclairi was the most abundant macrofaunal species in the intertidal oyster-shell assemblages (density range = 20 to 8500 amphipods m^–2), and its density was positively correlated with the depth of the oyster-shell layer (r = 0.85,n = 30,p < 0.005). Field experiments showed that amphipod density was much lower when oyster shells were whole (x = 340.7 ± 72.1,n = 10) as opposed to fragmented [x = 41.4 ± 9.3,n = 10;t _c (Welch's approximatet-test) = 13.0,df = 9.3,p < 0.05]. Densities of a predator, juvenileC. magister, were not affected by depth of the shell layer nor by degree of fragmentation (whole shell,x = 14.6 ± 13.0 crab;fragmented shell,x = 18.7 ± 2.4 crab;t _c = 0.83,df = 9.7,p > 0.05). Predation rate on single amphipods by crabs did not differ between habitat types (whole shells vs fragmented shells), but mating pairs were consumed more often in the whole-shell treatment (whole shell,x = 0.9 ± 0.8, fragmented shell,x = 0.1 ± 0.3). There were no differences in the size of single amphipods (both sexes) consumed between treatments, or in the size of the paired males consumed. Field experiments showed that the opportunity for selection (i) on male body weight increased with increasing amphipod density which, in turn, increased with increasing degree of shell fragmentation (whole-shell treatment,i = 0.0014 ± 0.0002, fragmented-shell treatment,i = 0.3756 ± 0.0338). Large spatial and temporal fluctuations in population abundance complicate the evaluation of the importance of selection in determining traits such as body weight.     

Genetic structure of Patagonian toothfish (Dissostichus eleginoides) populations on the Patagonian Shelf and Atlantic and western Indian Ocean Sectors of the Southern Ocean

The genetic structure of Patagonian toothfish populations in the Atlantic and western Indian Ocean Sectors of the Southern Ocean (SO) were analysed using partial sequences of the mitochondrial 12S rRNA gene and seven microsatellite loci. Both haplotype frequency data (F _ST>0.906, P<0.01) and microsatellite genotype frequency data (F _ST=0.0141–0.0338, P<0.05) indicated that populations of toothfish from around the Falkland Islands were genetically distinct from those at South Georgia (eastern Atlantic Sector SO), around Bouvet Island (western Atlantic Sector SO) and the Ob Seamount (western Indian Ocean Sector of the SO). Genetic differentiation between these populations is thought to result from hydrographic isolation, as the sites are separated by two, full-depth, ocean-fronts and topographic isolation, as samples are separated by deep water. The South Georgia, Bouvet and Ob Seamount samples were characterised by an identical haplotype. However, microsatellite genotype frequencies showed genetic differentiation between South Georgia samples and those obtained from around Bouvet Island and nearby seamounts (F _ST=0.0037, P<0.05). These areas are separated by large geographic distance and water in excess of 3,000 m deep, below the distributional range of toothfish (<2,200 m). No significant genetic differentiation was detected between samples around Bouvet Island and the Ob Seamount although comparisons may have been influenced by low sample size. These localities are linked by topographic features, including both ridges and seamounts, that may act as oceanic “stepping stones” for migration between these populations. As for other species of deep-sea fish, Patagonian toothfish populations are genetically structured at the regional and sub-regional scales.     

Weight and chemical composition of some important oceanic zooplankton in the North Pacific Ocean

Wet and dry weight, total carbon, nitrogen, hydrogen, and ash contents were determined on 33 species of zooplankton distributed predominantly in the open sea region of the North Pacific. Sampling covered the waters from 44°N to the equator. Average percentage of dry weight to wet weight was about 19% of all samples from the whole area. Percentage dry weight of carbon in copepods was on an average 51.5%. The highest value, 66.6%, was obtained in eggs of the copepod Pareuchaeta sarsi. Mixed zooplankton was assumed to contain carbon comprising about 35 to 45% of the dry weight. Carbon contained in the zooplankton biomass existing in the upper 200 m in the western parts of the northern North Pacific and Bering Sea during spring and summer was estimated to range from 20 to 85 mg C/m³. Nitrogen content varied considerably with localities. Average ratio of carbon to nitrogen was 8.5 in subarctic copepods, and 4.1 in subtropic-tropic copepods. This ratio also varied with season. In the copepod Calanus cristatus the ratio was highest (10.0) in May, immediately after the spring bloom of phytoplankton, when the animals contained much fat. The ratio fell to 5.1 in December. There seemed to be a large seasonal variation in boreal zooplankton due to great fluctuations of environmental conditions, especially the amount of food available; in tropical species the range was small because of environmental uniformity. Average hydrogen content was about 6 to 10%. The percentage of ash to dry weight amounted to 39.3% in pteropods and 3.4% in copepods.     

An oceanographic interpretation of seabird distributions in the Indian Ocean

When sightings of seabirds in the Indian Ocean are analyzed in conjunction with oceanographic data, the distributions of certain species and higher taxa show significant correlation with the temperature and salinity of the surface waters. Closely related species occur preferentially over different types of surface water. Characteristic associations of species were also found corresponding to surface water-types. Seabirds are not exempted by their mobility from the constraints of the marine environment.     

Deep distributions of oceanic cirripede larvae in the Sargasso Sea and surrounding North Atlantic Ocean

From deep ( 1000 m), multi-depth zooplankton samples taken in the Azores frontal region from November 1980 to June 1981, high numbers of the two larval forms ofLepas pectinata, the commonest lepadid cirripede in this area, were sampled. The nauplii and cyprid larvae are large and long-lived. Nauplii were sampled where they feed, in the upper 150 m, closely associated with the fluorescence maximum. The cyprids were mainly sampled between 300 and 400 m, with a sharp cut-off in numbers just below the distribution peak. This deep distribution is intriguing, as the cyprids, which were not migrating diurnally, are non-feeding. To complete their life cycle they must settle on floating debris at the surface, where very few were sampled. They are negatively buoyant and there is no apparent physical reason for this deep distribution. There was no obvious pattern of changes in individual length or length/dry weight distribution with depth, the population appeared homogeneous. There was also no accumulation of other zooplankton at the same depth, or evidence from gut contents of large carnivores that the distribution pattern was caused by selective predation. A close association exists betweenL. pectinata andSargassum spp. weed, the cyprids preferentially settling on small fragments of weathered weed, the supply of which may be enhanced after winter. During winter, the harsh environment at the surface of the northern Sargasso Sea may discourage cyprid settlement. The deep distribution may be an ontogenetic migration conferring some survival advantage and saving energy due to the lower temperature and oxygen levels at depth. If it is a behavioural mechanism, duration of the cyprid stage will be extended until a more clement time of year, allowing them to settle over a longer period. The cyprids of other species were also sampled at depth, so the phenomenon appears to be widespread. If subsequent research confirms these observations as an ontogenetic migration, our current understanding of the fouling behaviour of oceanic lepadid cirripedes would be considerably modified.     

Large-scale oceanic distribution and population structure of Calanus finmarchicus, in relation to physical environment, food and predators

The investigation was carried out from 62°N to 73°N and from 14°E to 11°W in the Norwegian Sea during 19 June-12 July 1997. Regional differences in the phase of the seasonal development of the plankton community were evident, most pronounced across the Arctic front. In the Coastal and eastern Atlantic domains, post-bloom conditions prevailed, characterised by low chlorophyll a (chl a) levels and a phytoplankton assemblage dominated by coccolithophorids and small flagellates. During the study period, egg production rates of Calanus finmarchicus were low (<10 eggs female^-1 day^-1), older copepodite stages dominated, and the seasonal descent to deeper waters had started. In the Arctic domain, bloom conditions were evident by high chl a levels and a high abundance of large diatoms. Egg production rates were higher (a maximum of 29 eggs female^-1 day^-1), but the dominance of stages CI-CIII indicated that considerable spawning had already occurred prior to the spring bloom. The seasonal descent had barely started. Both invertebrate and fish predators were most abundant in the Coastal and eastern Atlantic domains, with abundance strongly decreasing north-westwards. No tight relationship between total abundance of invertebrate or fish predators and that of C. finmarchicus was apparent. However, a weak, but significant, relationship between abundance of young stages of chaetognaths and Euchaeta spp. versus young stages of C. finmarchicus was found, indicating that these invertebrate predators develop parallel to the development of the new cohort of C. finmarchicus. In early summer, C. finmarchicus had reached overwintering stages, and had started to accumulate in deeper waters in areas with the highest abundance of horizontally migratory planktivorous fish.     

The Mediterranean intertidal habitat as a natural laboratory to study climate change drivers of geographic patterns in marine biodiversity

Nylon bags containing yellow leaves of Rhizophora apiculata and Avicennia marina, were immersed for 80 days from August to October, 1996. the decomposing leaves were collected every 10 days and analysed for dry weight loss and six biochemical parameters: tannins, total amino acids, total sugars, total nitrogen, total lipids and fatty acid profile. the leaf weight initially decreased very rapidly by about 50% of the start in two species of mangroves within 10 days. Similar changes were observed with tannins, total amino acids and sugars. However, the concentration of nitrogen increased significantly with decomposition. There was no significant change in total lipid and fatty acid profile. the highest concentration of fatty acid in the decomposing leaves was palmitic acid (16:0). Unsaturated fatty acids such as, 18:1 w7c and 18:1 w9c were found to be present in decomposing leaves of both species.     

Symbiosis between bacteria and oceanic clonal sea star larvae in the western North Atlantic Ocean

Bacteria were present in the majority of clonal sea star bipinnariae (Luidia sp.) collected between June 1987 and August 1990 from oceanic populations in the subtropical western North Atlantic Ocean. Light and electron microscopy revealed dense aggregations of bacteria within lobes of the epidermal cuticle in the gastric region of larvae. Gram-negative rods and less-common elongate spiral bacteria were observed, always in close association with branching epidermal microvilli. Intact and partially digested bacteria occurred in vesicles and phagosomes within epidermal cells, a probable indication of phagocytotic activity by the host. The association of larvae of Luidia sp. and bacteria ranged widely on both geographical and temporal scales. During July and August 1988, larvae were abundant (1.6 to 11.1 m³) in the mixed surface layer (<10 to 100 m) of stations in the Gulf Stream, the Sargasso Sea and the North Equatorial Drift, and 96% (mean of 5 stations, n=8 to 10 larvae in each station) of the individuals surveyed harbored bacteria beneath their cuticle. In a single station on the Florida Current sampled during winter, spring, and summer months between 1989 and 1991, 79 to 90% of the larvae harbored bacteria. The incidence of symbiosis was higher in actively cloning larvae than in non-cloning larvae. This is the first documentation of a symbiosis in field populations of echinoderm larvae.     

Population structure of the black tiger prawn, Penaeus monodon, among western Indian Ocean and western Pacific populations

We examined the population structure of the black tiger prawn, Penaeus monodon Fabricius, 1798, in the Indo-West Pacific by analyzing the geographic distribution of elongation factor 1-alpha intron sequences from specimens collected during the winter and spring of 1997. Both the molecular phylogeny of alleles and F-statistics indicated very strong differentiation between populations from the western Indian Ocean and western Pacific. This pattern is concordant with other recent studies of marine species in this region, implying that the Indo-Australian Archipelago represents a biogeographic break between populations in the Indo-West Pacific. F _ST-values among populations in the western Indian Ocean also indicate structure within this region, whereas no structure was found among western Pacific populations. Nucleotide diversity was significantly lower in the western Indian Ocean populations than in the western Pacific, implying that the populations have regional differences in demographic history. Received: 16 November 1998 / Accepted: 26 May 1999     

Habitat structure and complexity as determinants of biodiversity in blue mussel beds on sublittoral rocky shores

Habitat-forming, ecosystem engineer species are common in most marine systems. Still, much uncertainty exists about how individual and population-level traits of these species contribute to ecosystem processes and how engineering species jointly affect biodiversity. In this manipulative field experiment, we examined how biodiversity in marginal blue mussel beds is affected by blue mussel (1) body size, density and patch context and (2) presence of fucoid and algal structures. In the study area, bladder-wrack (Fucus vesiculosus), filamentous algae and blue mussels (Mytilus edulis) coexist at shallow depths in a variety of patch configurations and offer complex habitats with a high variability of resources. We hypothesized that complexity in terms of mussel bed structure and algal presence determines species composition and abundance. Results from the experiment were compared with macrofaunal communities found in natural populations of both engineering species. Results show that the physical structure and blue mussel patch context are important determinants for species composition and abundance. Results further show that the presence of algal structures positively affects diversity in blue mussel habitats due to increased surface availability and complexity that these algae offer. This study shows that blue mussel beds at the very margin of their distribution have an indisputable function for promoting and maintaining biodiversity and suggest that facilitative effects of habitat-modifying species are important on Baltic Sea rocky shores with fundamental importance to community structure.     

Production and fate of copepod fecal pellets across the Southern Indian Ocean

The vertical distribution of copepods, fecal pellets and the fecal pellet production of copepods were measured at seven stations across the Southern Indian Ocean from productive areas off South Africa to oligotrophic waters off Northern Australia during October/November 2006. We quantified export of copepod fecal pellet from surface waters and how much was retained. Furthermore, the potential impact of Oncaea spp. and harpacticoid copepods on fecal pellets degradation was evaluated and found to be regional substantial. The highest copepod abundance and fecal pellet production was found in the western nutrient-rich stations close to South Africa and the lowest at the central oligotrophic stations. The in situ copepod fecal pellet production varied between 1 and 1,000 μg C m⁻³ day⁻¹. At all stations, the retention of fecal pellets in the upper 400 m of the water column was more than 99% and the vertical export of fecal pellets was low (<0.02 mg m⁻² day⁻¹).