Measurement of copepod predation on nauplii using qPCR of the cytochrome oxidase I gene

A method to directly measure predation rates by older stage copepods upon copepod nauplii using species-specific primers for the mitochondrial cytochrome oxidase subunit one gene (mtCOI) and real-time quantitative PCR (qPCR) was developed. The general approach is to determine the mtCOI gene copy number of an individual prey organism and the copy number of the same gene in the stomachs of predatory copepods collected in the field. From the knowledge of DNA disappearance rates in the stomachs, ingestion rates can be calculated. In October 2006, laboratory experiments were carried out with Acartia tonsa N1 and N2 as prey and adult female Centropages typicus as predator. The copepods were collected in Narragansett Bay, USA. A. tonsa mtCOI copy numbers copepod⁻¹ were determined for stages N1–C1 and for adults. A. tonsa DNA was detectable in the guts of the predators for as long as 3 h. Exponential rates of decline in prey DNA from the stomachs of the predators are similar to those measured for gut pigments. Because of the very small amount of DNA in an individual N1 or N2 nauplius, procedures were developed to maximize the quantitative extraction and recovery of DNA and to increase the sensitivity of the method. Two quite divergent haplotypes of A. tonsa were found in Narragansett Bay, which required separate qPCR primers; one was present in summer (July) and the other in fall and winter (October and February). With modification, the methods in this study can likely be applied to a range of predator–prey systems.     

Quantitative PCR to estimate copepod feeding

Copepods play a central role in marine food webs as grazers of plankton and as key prey for many predators. Therefore, quantifying their specific trophic interactions is critical for understanding the role of copepods in ocean processes. However, because of methodological constraints, it remains difficult to investigate in situ copepod feeding without reliance on laborious intrusive and potentially biased incubation approaches. Recent advances in PCR-based methodologies have demonstrated the feasibility of directly identifying copepod diets based on prey DNA sequences. Yet, obtaining quantitative information from these approaches remains challenging. This study presents results of systematic efforts to develop a quantitative PCR (qPCR) assay targeted to 18S rRNA gene fragments to estimate copepod gut content of specific species of prey algae. These results were first compared to gut content estimates based on fluorescence in the copepod Calanus finmarchicus fed monocultures of two different microalgae species in controlled laboratory studies. In subsequent field studies, we compared feeding rates obtained by microscopy and qPCR for Temora longicornis and Acartia clausi feeding on the haptophyte Phaeocystis globosa in natural blooms. These investigations demonstrate a semi-quantitative relationship between gut content estimates derived from qPCR, gut pigment, and direct microscopy. However, absolute estimates of gut content based on qPCR methodology were consistently lower than expected. This did not appear to be explained by the extraction methods used, or interference by non-target (predator) DNA in the PCR reactions, instead suggesting digestion of prey-specific nucleic acids. Furthermore, the 18S rDNA target gene copy number of the phytoplankton varied with growth phase. Nonetheless, when prey target gene copy number in the ambient water is quantified, the qPCR-approach can be compared to other methods, and then used to semi-quantitatively estimate relative copepod grazing on specific prey in situ without involving further incubations. A distinct advantage of a DNA-based molecular approach compared to gut fluorescence and direct microscopic observation, is the ability to detect non-pigmented and macerated prey. Future studies should aim to correct for breakdown in prey DNA and perform extensive calibrations to other methods in order to achieve a quantitative measure of feeding rates in situ.     

Quantification of copepod gut content by differential length amplification quantitative PCR (dla-qPCR)

Quantification of feeding rates and selectivity of zooplankton is vital for understanding the mechanisms structuring marine ecosystems. However, methodological limitations have made many of these studies difficult. Recently, molecular based methods have demonstrated that DNA from prey species can be used to identify zooplankton gut contents, and further, quantitative gut content estimates by quantitative PCR (qPCR) assays targeted to the 18S rRNA gene have been used to estimate feeding rates in appendicularians and copepods. However, while standard single primer based qPCR assays were quantitative for the filter feeding appendicularian Oikopleura dioica, feeding rates were consistently underestimated in the copepod Calanus finmarchicus. In this study, we test the hypothesis that prey DNA is rapidly digested after ingestion by copepods and describe a qPCR-based assay, differential length amplification qPCR (dla-qPCR), to account for DNA digestion. The assay utilizes multiple primer sets that amplify different sized fragments of the prey 18S rRNA gene and, based on the differential amplification of these fragments, the degree of digestion is estimated and corrected for. Application of this approach to C. finmarchicus fed Rhodomonas marina significantly improved quantitative feeding estimates compared to standard qPCR. The development of dla-qPCR represents a significant advancement towards a quantitative method for assessing in situ copepod feeding rates without involving cultivation-based manipulation.     

The role of ciliates,heterotrophic dinoflagellates and copepods in structuring spring plankton communities at Helgoland Roads,North Sea

Mesocosm experiments coupled with dilution grazing experiments were carried out during the phytoplankton spring bloom 2009. The interactions between phytoplankton, microzooplankton and copepods were investigated using natural plankton communities obtained from Helgoland Roads (54°11.3′N; 7°54.0′E), North Sea. In the absence of mesozooplankton grazers, the microzooplankton rapidly responded to different prey availabilities; this was most pronounced for ciliates such as strombidiids and strobilids. The occurrence of ciliates was strongly dependent on specific prey and abrupt losses in their relative importance with the disappearance of their prey were observed. Thecate and athecate dinoflagellates had a broader food spectrum and slower reaction times compared with ciliates. In general, high microzooplankton potential grazing impacts with an average consumption of 120% of the phytoplankton production (P _p ) were measured. Thus, the decline in phytoplankton biomass could be mainly attributed to an intense grazing by microzooplankton. Copepods were less important phytoplankton grazers consuming on average only 47% of P _p . Microzooplankton in turn contributed a substantial part to the copepods’ diets especially with decreasing quality of phytoplankton food due to nutrient limitation over the course of the bloom. Copepod grazing rates exceeded microzooplankton growth, suggesting their strong top-down control potential on microzooplankton in the field. Selective grazing by microzooplankton was an important factor for stabilising a bloom of less-preferred diatom species in our mesocosms with specific species (Thalassiosira spp., Rhizosolenia spp. and Chaetoceros spp.) dominating the bloom. This study demonstrates the importance of microzooplankton grazers for structuring and controlling phytoplankton spring blooms in temperate waters and the important role of copepods as top-down regulators of microzooplankton.     

Omnivorous feeding behavior of the Antarctic krill Euphausia superba

Feeding experiments were conducted at Palmer Station from December 1985 to February 1986 to examine the potential role of copepod prey as an alternative food source for Euphausia superba. Copepod concentration, copepod size, phytoplankton concentration, the duration of krill starvation and the volume of experimental vessels were altered to determine effects on ingestion and clearance rates. Krill allowed to feed on phytoplankton and copepods in 50-litre tubs showed greatly increased feeding rates relative to animals feeding in the much smaller volumes of water traditionally used for krill-feeding studies. Clearance rates on copepods remained constant over the range of concentrations offered, but clearance rates on phytoplankton increased linearly with phytoplankton concentration. Feeding rates increased when larger copepods were offered and when krill were starved for two weeks prior to experiments. Clearance rates of krill feeding on copepods were higher than, but not correlated with, their clearance rates on phytoplankton in the same vessel. E. superba may have a distinct mechanism for capturing copepods, perhaps through mechanoreception. Although our observed clearance rate of 1055 ml krill^-1 h^-1 indicates that krill can feed very efficiently on copepod prey, such feeding would meet less than 10% of their minimum metabolic requirements at the typical copepod concentrations reported for Antarctic waters. However, substantial energy could be gained if krill fed on the patches of high copepod concentrations occasionally reported during the austral summer, or if krill and copepods were concentrated beneath the sea ice during the winter or spring months. Our results, indicating efficient feeding on zooplankton and higher clearance rates on phytoplankton than previously believed, represent a step towards balancing the energy budget of E. superba in Antarctic waters.     

Feeding four species of pelagic copepods under experimental conditions

Different qualitative and quantitative aspects of feeding with varied compositions of diets have been studied in 4 species of pelagic copepods: Calanus helgolandicus, Centropages typicus, Temora stylifera and Acartia clausi. By feeding copepods different algal concentrations, it was shown that when food concentration increases grazing rate decreases; the ingestion rate remains fairly constant in the lower range of concentrations, but then increases, reaching a plateau at higher algal concentrations. There is a significant correlation between daily food intake and fecal pellet production. On a pluri-algal diet, selective grazing is observed: larger phytoplankton cells are more efficiently removed than smaller ones. Using Artemia nauplii, it is shown that the copepods studied are also able to eatch and ingest animal prey. Increased daily food intake affects respiration and oviposition. Metabolic requirements, gross growth-efficiency, and food assimilation have been ealculated in Calanus helgolandicus, Centropages typicus and T. stylifera for a large range of algal concentrations.     

Vulnerability of the copepod Acartia tonsa to predation by the scyphomedusa Chrysaora quinquecirrha : effect of prey size and behavior

Although scyphomedusae have received increased attention in recent years as important predators in coastal and estuarine environments, the factors affecting zooplankton prey vulnerability to these jellyfish remain poorly understood. Current models predicting feeding patterns of cruising entangling predators, such as Chrysaora quinquecirrha (Desor, 1948), fail to account for the selection of fast-escaping prey such as copepods. Nevertheless, our analysis of gastric contents of field-collected medusae showed that this scyphomedusa fed selectively on the calanoid copepod Acartia tonsa (Dana, 1846) and preferentially ingested adult over copepodite stages. We measured feeding rates in a planktonkreisel while simultaneously videotaping predator–prey interactions. C. quinquecirrha consumed adult A. tonsa ten times faster than copepodites. Differences in prey behavior, in the form of predator–prey encounter rates or post-encounter escape responses, could not account for the elevated feeding rates on adults. Prey size, however, had a dramatic impact on the vulnerability of copepods. In experiments using heat-killed prey, feeding rates on adults (1.5 times longer than copepodites) were 11 times higher than on copepodites. In comparison, medusae ingested heat-killed prey at only two to three times the rate of live prey. These results suggest that during scyphomedusan–copepod interactions, prey escape ability is important, but ultimately small size is a more effective refuge from predation. Received: 26 September 1997 / Accepted: 20 May 1998     

Phytoplankton pigments in the gut concents of planktonic copepods from coastal waters off southern California

Phytoplankton xanthophylls in the gut contents of the copepods Calanus pacificus, Corycaeus anglicus, and Paracalanus parvus, collected from 5 stations off San Onofre, California, in June 1982, were measured by reverse phase, high-performance liquid chromatography (HPLC). The dinoflagellate pigment, peridinin, was usually the most abundant xanthophyll in the guts of all three species of copepods. Evidently, feeding was principally on dinoflagellates (which dominated the phytoplankton biomass). The level of feeding activity, rather than the class of phytoplankton ingested, seemed to differentiate the behaviors of the copepods. Xanthophyll content per unit copepod wet weight was higher in Corycaeus anglicus and Paracalanus parvus than in Calanus pacificus. Chlorophyll a fluorescence of the copepod gut contents was measured in conjunction with the analysis of gut xanthophylls. The xanthophyll content of the gut varied directly with the concentration of chlorophyll a in the gut. Xanthophyll content was not related to the concentration of pheopigments in the gut. Apparently, the xanthophylls that were detected were due to the presence of recently ingested phytoplankton biomass.     

Combining DNA and morphological analyses of faecal samples improves insight into trophic interactions: a case study using a generalist predator

The diet of pinnipeds is most commonly inferred from morphologically diagnostic remains of prey in their scats. Although this method can generate quantitative estimates of diet simply, important prey types may not always be detected. DNA-based methods improve detection of prey in scats, but they are not quantitative. While some studies have combined morphological and DNA-based methods, these have only assessed prey that are represented by their hard remains in scats. To overcome this bias, we apply molecular and morphological analyses to the soft and hard portions of faecal samples respectively, to estimate the diet of lactating Antarctic fur seals (Arctocephalus gazella) on Heard Island. The diet of this population is of particular interest because it is expanding rapidly and may rely to some extent on mackerel icefish (Champsocephalus gunnari), which are subject to commercial fisheries. Based on results from morphological analysis and likely important prey types, we tested for DNA remains of C. gunnari, myctophids and squid in faecal samples. The proportion of samples (n = 54) yielding no dietary information was reduced from around 25.9% using either method alone, to 9.3% when combined. Detection of all prey types tested for was notably improved by integrating molecular and morphological data. Data from either method alone would have underestimated the number of animals consuming C. gunnari by around 25.7%. Detection of multiple prey types in samples increased from 9.3% when using morphological analysis only, to 33.3% when using DNA only, to 46.3% when using both methods. Taken in isolation, morphological data inferred that individual seals consume either C. gunnari or myctophids, probably foraging in separate locations characteristic of those prey. Including molecular data demonstrated that while this may be true of some individuals, many other seals consume a mixed diet of at least C. gunnari, myctophids and squid. This new approach of combining DNA-based and morphological analyses of diet samples markedly increased the number of samples yielding dietary information, as well as increasing the amount of information attained from those samples. Our findings illustrate the broad potential of this technique to improve insight into trophic interactions in marine ecosystems.

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Calanoid copepod escape behavior in response to a visual predator

Calanoid copepods typically exhibit escape reactions to hydrodynamic stimuli such as those generated by the approach of a predator. During the summers of 2000, 2001 and 2004, two small calanoid species, Temora turbinata Dana, 1849 and Paracalanus parvus Claus, 1863 were exposed to a visual predatory fish, the blenny Acanthemblemaria spinosa Metzelaar, 1919, and their predator–prey interactions were recorded using both high-speed and standard videographic techniques. Copepod escape reaction components, including swimming pattern, reactive distance, turning rate, and jump kinetics, were quantified from individual predation events using motion analysis techniques. Among the observed escape reaction components, differences were noted between the species’ swimming patterns prior to attack and their response latencies. Temora turbinata was a continuous cruiser and P. parvus exhibited a hop-and-sink swimming pattern. During periods of sinking, P. parvus stopped beating its appendages, which presumably reduced any self-generated hydrodynamic signals and increased perceptual abilities to detect an approaching predator. Response latency was determined for each copepod species using a hydrodynamic stimulus produced by a 1 ms acoustic signal. Response latencies of T. turbinata were significantly longer than those of P. parvus. Despite some apparent perceptual advantages of P. parvus, the blenny successfully captured both species by modifying its attack behavior for the targeted prey.     

Prey selection by the scyphomedusan predator Aurelia aurita

We describe feeding behavior of Aurelia aurita (Linnaeus) using gut content analyses of field-collected specimens and a mesocosm experiment. The field studies were conducted in Narragansett Bay, Rhode Island, USA from March to April 1988, and the mesocosm studies were done at the Marine Ecosystems Research Laboratory at the University of Rhode Island. Patterns of prey selection changed with medusa diameter. Smaller medusae (12 mm diameter) consumed mostly hydromedusan prey whereas larger medusae (up to 30 mm diameter) ingested greater numbers of copepod prey. While larger medusae did feed on copepods, their diet also contained more barnacle nauplii and hydromedusae than expected from the relative abundances of these prey types in plankton samples. A marginal flow mechanism of feeding by A. aurita provided an explanation for the patterns of prey selection we observed in medusae of different sizes and among widely divergent prey types. Our data indicated that large prey, with escape speeds slower than the marginal flow velocities around the bell margins of A. aurita, made up a substantial fraction of the daily ration when they were available. Such prey species may be more important to nutrition than the more abundant copepods and microzooplankton. Successful development of young medusae may depend upon an adequate supply of slowly escaping prey.     

Assessing feeding of a carnivorous copepod using species-specific PCR

The polymerase chain reaction (PCR) offers a sensitive and selective way to detect trace amounts of biological remnants. Here, we show that this simple molecular technique can be applied to identify prey copepods in the fecal pellets of carnivorous zooplankton. Using variation in the mitochondrial cytochrome C oxidase subunit I (mtCOI) sequence, we developed a species-specific oligonucleotide PCR primer (COI-2026) for Calanus helgolandicus. In a touch-down PCR, Calanus DNA was amplified from pellets collected from freshly incubated individuals of the carnivorous copepod Pareuchaeta norvegica. Positive results could easily be detected by agarose gel electrophoresis.Electronic Supplementary Material Supplementary material is available in the online version of this article at Communicated by M. Kühl, Helsingør     

Fatty acid signatures of stomach contents reflect inter- and intra-annual changes in diet of a small pelagic seabird,the Thin-billed prion <Emphasis Type="Italic">Pachyptila belcheri</Emphasis>

In diet analyses of seabirds, fatty acid signatures (FAS) can be used to overcome biases due to differential digestion of prey and enable the analysis of very digested diet samples. We applied FAS analysis to stomach contents of a small sub-Antarctic seabird, the Thin-billed Prion Pachyptila belcheri, which feeds mainly on squid during incubation and on crustacea during chick rearing. This seasonal dietary switch of Thin-billed prions was reflected in differences in FAS in regurgitates, as were inter-annual differences in diet composition. A discriminant function analysis correctly classified 93.4% of cases with respect to year (2006–2008) and stage of the breeding cycle (incubation versus chick rearing). The dominant types of crustacea in the diet of Thin-billed prions (amphipods Themisto gaudichaudii, euphausiids, decapods Munida gregaria, and calanoid copepods) were distinguished well by characteristic FAS patterns. However, the FAS of the two main types of prey by volume, amphipods T. gaudichaudii and squid Gonatus antarcticus, were similar to each other. Although FAS were successfully applied in the analysis of prey in stomach contents of prions, FAS of some prey species were similar and may not be distinguishable from each other if used in quantitative diet analyses.     

Variation in cadmium uptake by estuarine phytoplankton and transfer to the copepod Eurytemora affinis

The pathways of cadmium (Cd) uptake and transfer within an estuarine planktonic community from the Patuxent River, Maryland, USA, were investigated using an assemblage of natural phytoplankton and the copepod Eurytemora affinis Poppe. The experiment was carried out in October 1992 in replicated 500-liter, flow-through, fiberglass tanks. Growth rate, species composition, and Cd loading affected the accumulation of Cd by the phytoplankton. Uptake of Cd by phytoplankton was proportional to the amount of Cd available in the water column. Partition coefficients (K _d) for phytoplankton uptake averaged 4.4 × 10⁴. As metal loading rates and phytoplankton species composition changed during the 12-d experiment, Cd partitioning declined. Transfer of Cd to E. affinis occurred from Cd-laden phytoplankton, with levels in the copepods being approximately the same as, or somewhat less, than in the phytoplankton. Some Cd uptake occurred in copepods exposed to dissolved Cd only; however, the uptake was considerably less than that seen from food. Thus, Cd content of higher trophic levels, such as copepods, can be affected by the degree of Cd incorporation in their food source, and by ecological factors regulating phytoplankton ingestion. Received: 13 September 1995 / Accepted: 29 October 1998     

Predation on meiofauna by juvenile fish in a Western Mediterranean flatfish nursery ground

The authors investigated the gut contents of juveniles of three flatfish species (Buglossidium luteum, Arnoglossus thori and A. laterna) collected from Banyuls Bay, Western Mediterranean, from January 1981 through June 1982. Young solenettes, B. luteum, appear to be dependent on meiofauna, particularly harpacticoid copepods, as prey during their first year of benthic life. By comparison, the scaldfish, especially A. laterna, prey primarily upon peracarids from the beginning of their benthic life. Evidence of prey selection exists for the genera Photis (amphipod) and Longipedia (harpacticoid copepod). By regrouping these results with those of Bodiou and Villiers (1978/1979) on the goby Deltentosteus quadrimaculatus, and comparing them with other data from the literature, it appears that the impact of predation by juvenile fish is significant for some meiofaunal species, providing that they are actively selected by the predators, as is Longipedia scotti. Generally, however, predation impact on the meiofauna as a whole is weak.     

Modelling the horizontal spatial structure of planktonic community in Lake Trasimeno (Umbria,Italy) using multivariate geostatistical methods

Spatial heterogeneity of ecological systems has been recognised in recent years as an important ecological feature of an ecosystem, rather than a mere statistical nuisance. However, although considerable interest has been paid to the development of statistical methods for the analysis of spatial environmental data, when in presence of more species or environmental variables common analyses still fail to recognise the necessity of a joint modelling of the whole correlation structure. In this paper, we propose to study the multivariate spatial autocorrelation of a plankton community by making explicit reference to a spatial linear factor model entailing a set of constraints for the spatial structure of the planktonic species. The data set examined come from an intensive 2-day sampling survey performed in July 1991 on Lake Trasimeno (Italy) to investigate the horizontal spatial heterogeneity and distribution of the planktonic community, from small (50 m) to large (1000–10,000 m) scale. The analysis revealed that zooplankton and phytoplankton essentially have different degrees of heterogeneity and different spatial structures which required separate modelling. On the other hand, the similarity of the spatial autocorrelation found within zooplankton and phytoplankton communities, indicates that at the investigated scales of observation the horizontal organisation of both components is not appreciably affected by species-specific behaviours. The analysis of the multivariate spatial patterns emerging from the mapping of the extracted factors suggested an interpretation of the distribution of macrozooplankton and phytoplankton assemblages in terms of planktonic responses to environmental factors of a lake-size scale.     

Zooplankton capture by two scleractinian corals,Madracis mirabilis andMontastrea cavernosa,in a field enclosure

Capture of zooplankton by scleractinian corals has been noted for several species, yet quantitative information on rates of capture and differential capture by prey taxon has been lacking. We used field enclosures to examine prey capture for two coral species,Madracis mirabilis (Duchassaing and Michelotti) andMontastrea cavernosa (Linnaeus), on the north coast of Jamaica (Discovery Bay) in November 1989, February and March 1990, and January 1992.M. mirabilis has small polyps and a branching colony morphology (high surface/volume ratio), whereasM. cavernosa has large polyps and mounding colonies (low surface/volume ratio). Corals were isolated front potential prey, then were introduced into enclosures with enhanced zooplankton concentrations for 15- to 20-min feeding periods. Corals were fixed immediately after the experiment to prevent digestion, and coelenteron contents were examined for captured zooplankton. Plankton pumps were used to sample ambient zooplankton in the enclosures near the end of each run. Selectivity and capture rates were calculated for each prey taxon in each experiment; both indices were high for relatively uncommon large prey, and low for copepods, which were often the most common items in the plankton. Sizes of zooplankton captured by both species were generally larger than those available considering all prey taxa combined, but were almost the same for both coral species, even though the corals' polyp sizes are very different. This occurred primarily because small copepods, with low capture rates, dominated most plankton samples. For specific prey species, or group of species, there were few significant differences in size between the prey available and the prey captured.M. mirabilis, with small polyps, also captured far more prey per unit coral biomass than didM. cavernosa, with much larger polyps. We hypothesize that the large differences in capture rate of prey taxa are related to escape or avoidance behavior by those potential prey, and to the mechanics of capture, rather than to any selectivity by the corals.     

Osmoacclimation in Enteromorpha intestinalis: long-term effects of osmotic stress on organic solute accumulation

The fate of the protease trypsin in intestines of individual herring larvae Clupea harengus L. was studied following digestion of the copepod Acartia tonsa. Trypsin was retained in the intestine during two consecutive pulses of feeding and defaecation of copepods. Quantification of herring trypsin in digested, defaecated copepods showed that ca. 1% of larval intestinal enzyme was defaecated along with 1 to 3 copepods. Following ingestion of a single meal, the level of intestinal trypsin post-ingestion declined to pre-ingestion levels within 1 to 2 d of starvation. All enzyme data thus indicated that trypsin, released in response to ingestion of a meal, was retained. In addition, analysis of fed subgroups of starved larvae clearly indicated that release of trypsin from the pancreas stopped after 6 to 8 d of starvation. As the fish still contained substantial amounts of trypsinogen, the underlying cause might be defective release mechanisms. Daily secretion of trypsin and processes responsible for enzyme retention in the gut are discussed. Assimilation efficiency in herring larvae was estimated for copepodite prey. Average carbon assimilation was 90%.     

Food web of an Antarctic midwater ecosystem

The diets of 93 species of plankton and micronekton taken in the upper 1000 m of Croker Passage (Gerlache Strait) in the austral fall, 1983, were examined and the principal features of the food web were characterized. Most species were small particle feeders, with phytoplankton and debris (of phytoplankton and krill) being the principal diet components. Krill remains were found in the guts of the majority of species examined, with the krill playing a greater role in the form of molts and debris than as living prey. Carcinores fed mostly on copepods, coelenterates and salps. Some of the larger species fed on live krill. No-hierarchical cluster analysis of diet information supported the concept of resource partitioning and determined the arrangement of the species into 21 feeding groups. Cluster analysis groupings tended to be along genetic lines with closely related and morphologically similar species having similar diets. These analyses were based on collections made in the austral fall (March–April, 1983) when phytoplankton standing crop was low, most zooplankton species had descended into the mesopelagic zone, and some of the more abundant species, such as Calanoides acutus, had ceased feeding. Because the trophodynamics of Antarctic ecosystems is strongly pulse-induced, it is essential to examine the food web at different periods in the seasonal cycle.     

Pacific harbor seals (<Emphasis Type="Italic">Phoca vitulina</Emphasis>) and salmon: genetics presents hard numbers for elucidating predator-prey dynamics

We used a PCR-based species test and microsatellite genotyping to determine salmonid species composition and quantity of Chinook among Pacific harbor seal (Phoca vitulina) prey. Tests were applied to DNA extracted from all salmonid bones recovered from scat (fecal) samples. Condition of bone samples and quantity of DNA varied substantially. Although DNA extraction and species identification was only successful for just over half of the bone samples, 93% of all scat samples had bones that were identified to species. Most often only a single salmonid prey species was evident within a scat sample (39% exclusively coho and 46% exclusively Chinook) but 13% contained bones from more than one species of salmonid. For scat samples that contained Chinook bones, 68% had skeletal remains from the same fish and 32% had bones from more than one individual Chinook, varying in number from two to four individuals per scat. In one case, bones from one individual Chinook were recovered in three different scat samples.