Mineralogy and chemistry of urinary stones: patients from North Jordan

Urinary stone diseases are increasing in the Middle East. The majority of urinary stone cases are found in the northern part of the country. Stone samples taken from patients living in the Irbid area were collected from Princess Basma Hospital. The present study concentrates on the mineralogical and chemical composition of the urinary stones and on the effective environmental factors that assist in developing the different types of urinary stones. Using X-ray diffraction techniques, the mineralogical composition of the urinary stones was found to be as follows: oxalate, cholesten, and uric acid, with cystine stones occuring more frequently than the others. Cholesten and calcium oxalate stones are the most dominant types of stones. Calcium oxalate is the most common type of oxalate stone. Calcium oxalate is represented in: whewellite, wheddellite, and calcium carbonate oxalate hydrate minerals, in addition to other minerals such as brushite, ammonium phosphate, vaterite, valleriite, and bobierrite from other types of stones. Bobierrite (phosphate group) is a new mineral reported in urinary stones, and this has not been determined in any previous study worldwide. Apatite (calcium phosphate) is deduced using scanning electron microscope (SEM) images. The SEM technique determined crystal forms and systems, shapes, morphological features, and the names of the minerals forming urine stones, while optical properties are studied by polarizing microscope. X-ray fluorescence technique determined the concentrations of major and some trace elements. It revealed that Ca is the main constituent of the urinary stones, especially those composed of calcium oxalate and calcium phosphate. The concentration of trace elements was Ba = 1.57, P = 3.61, Fe = 1.78, S = 2.08, Zr = 4.63, Mo = 3.92, Cu = 1.89, Co = 1.56, and F = 4.2% and was higher in the urinary stones of Jordanian patients than in foreigners in the country. Questionnaires completed by patients suggest that the most significant factors directly effecting the formation of stones are water, climate conditions, food rich in protein and rich in different chemicals. Moreover, some drugs and diseases might also help in developing other stones.     

X-ray diffraction and SEM study of kidney stones in Israel: quantitative analysis, crystallite size determination, and statistical characterization

Urinary calculi have been recognized as one of the most painful medical disorders. Tenable knowledge of the phase composition of the stones is very important to elucidate an underlying etiology of the stone disease. We report here the results of quantitative X-ray diffraction phase analysis performed on 278 kidney stones from the 275 patients treated at the Department of Urology of Hadassah Hebrew University Hospital (Jerusalem, Israel). Quantification of biominerals in multicomponent samples was performed using the normalized reference intensity ratio method. According to the observed phase compositions, all the tested stones were classified into five chemical groups: oxalates (43.2%), phosphates (7.7%), urates (10.3%), cystines (2.9%), and stones composed of a mixture of different minerals (35.9%). A detailed analysis of each allocated chemical group is presented along with the crystallite size calculations for all the observed crystalline phases. The obtained results have been compared with the published data originated from different geographical regions. Morphology and spatial distribution of the phases identified in the kidney stones were studied with scanning electron microscopy (SEM) and energy-dispersive X-ray spectroscopy (EDS). This type of detailed study of phase composition and structural characteristics of the kidney stones was performed in Israel for the first time.     

Mineralogical,compositional and isotope characterization of human kidney stones (urolithiasis) in a Sri Lankan population

In order to understand the processes of stone formation, compositional, spectroscopic, mineralogical and crystallographic characteristics of human urinary stones collected from patients in Sri Lanka were investigated in detail. The data showed that the majority of urinary calculi were calcium oxalate, either whewellite or weddellite. Other solid phases of stones were composed of struvite, uricite and hydroxylapatite. However, mixed compositions were common except for whewellite stones which occur frequently in pure form. Scanning electron microscope observations and associated energy-dispersive X-ray analyses revealed that whewellite or weddellite was well crystalized compared to other stones types, while phosphate stones were mostly cryptocrystalline. The average δ¹³C and δ¹⁸O of stones were − 32.2‰ (− 37.3 to − 17.4‰) and − 24.2‰ (− 26.7‰ to − 8.9‰), respectively. The δ¹³C values were highly depleted compared to North American and European urinary stones. This may be due to food habits of Asians who consume rice as the staple food.

     

Factors affecting the burrowing behaviour of Helice tridens (Grapsidae) and Macrophthalmus japonicus (Ocypodidae) in an estuary of northeast Japan

Helice tridens (De Haan) (Grapsidae) and Macrophthalmus japonicus (De Haan) (Ocypodidae) build separate burrows in reed marshes and muddy tidal flats, respectively, in the brackish-water estuaries of northeast Japan (38°11N, 141°48E). Habitat segregation between burrows of these two species was analysed by comparing the density of burrows of both species in their natural habitats, and on tidal flats subjected to various types of artificial treatment, in the summer of 1981 and 1982. Baskets, containing many stones, were placed on the ground in the reed marsh, tidal flat and creek and attracted many individuals of H. tridens, but not M. japonicus. When stones were placed on an area of tidal flat, H. tridens frequently formed burrows at the border between the stones and mud, suggesting that burrowing of H. tridens was related to the presence of solid substances lying on the ground, such as stones and shoots of the reed Phragmites australis (Cav.) Trin. In closed systems on the tidal flat and reed marsh, H. tridens and M. japonicus were able to construct burrows in both substrata regardless of high or low frequency. Moreover, it was recognized that H. tridens prevented the burrowing of M. japonicus in these closed systems. These results suggested that habitat segregation between H. tridens and M. japonicus burrows was caused primarily by an exclusive interaction between individuals of these two species.     

Effect of streambed substrate on macroinvertebrate biodiversity

Macroinvertebrates are important components of stream ecosystems, and are often used as indicator species for the assessment of river ecology. Numerous studies have shown that substrate is the primary physical environmental variable affecting the taxa richness and density of macroinvertebrates. The aim of this work is to study the effects of the characteristics of streambed substrate, such as grain size, shape, and roughness, on the composition and biodiversity of macroinvertebrates. A field experiment was done on the Juma River, a second-order mountain stream in northern China. Substrata of cobbles, hewn stones, pebbles, coarse sand, and fine sand were used to replace the original gravel and sand bed in a stretch of 30 m in length. The sampling results indicated that the macroinvertebrate assemblage is significantly affected by the grain size, porosity and interstitial dimension of the substrate, while it is rarely affected by the shape and the surface roughness of the experimental substrata. Macroinvertebrate compositions in cobbles and hewn stones were stable and changed least over time. The taxa richness and density of individuals in the substrata of cobbles, hewn stones, and pebbles are much higher than in those of the coarse sand and fine sand.     

Urinary stones as a novel matrix for human biomonitoring of toxic and essential elements

Monitoring of body burden of toxic elements is usually based on analysis of concentration of particular elements in blood, urine and/or hair. Analysis of these matrices, however, predominantly reflects short- or medium-term exposure to trace elements or pollutants. In this work, urinary stones were investigated as a matrix for monitoring long-term exposure to toxic and essential elements. A total of 431 samples of urinary calculi were subjected to mineralogical and elemental analysis by infrared spectroscopy and inductively coupled plasma mass spectrometry. The effect of mineralogical composition of the stones and other parameters such as sex, age and geographical location on contents of trace and minor elements is presented. Our results demonstrate the applicability of such approach and confirm that the analysis of urinary calculi can be helpful in providing complementary information on human exposure to trace metals and their excretion. Analysis of whewellite stones (calcium oxalate monohydrate) with content of phosphorus <0.6 % has been proved to be a promising tool for biomonitoring of trace and minor elements.

     

May a comprehensive mineralogical study of a jackstone calculus and some other human bladder stones unveil health and environmental implications?

This paper represents the first result of an active collaboration between the University of Sannio and the San Pio Hospital (Benevento, Italy), started in the 2018, that aims to a detailed mineralogical investigation of urinary stones of patients from Campania region. Herein, selected human bladder stones have been deeply characterized for clinical purposes and environmental biomonitoring, focusing on the importance to evaluate the concentration and distribution of undesired trace elements by means of microscopic techniques in the place of conventional wet chemical analyses. A rare bladder stone with a sea-urchin appearance, known as jackstone calculus, were also investigated (along with bladder stones made of uric acid and brushite) by means a comprehensive analytical approach, including Synchrotron X-ray Diffraction and Simultaneous Thermal Analyses. Main clinical assumptions were inferred according to the morpho-constitutional classification of bladder stones and information about patient’s medical history and lifestyle. In most of the analyzed uroliths, undesired trace elements such as copper, cadmium, lead, chromium, mercury and arsenic have been detected and generally attributable to environmental pollution or contaminated food. Simultaneous occurrence of selenium and mercury should denote a methylmercury detoxification process, probably leading to the formation of a very rare HgSe compound known as tiemannite.

     

Biosorption of Cr(VI) using low cost sorbents

Waste products from industrial operations, such as yohimbe bark, grape stalks, cork and olive stones were investigated for the removal of Cr(VI) from aqueous solutions. Equilibrium batch experiments at room temperature were performed. Metal uptake showed a pH-dependent profile and optimum uptake at initial pH between 2.0–3.0. Slight influence of NaCl on metal uptake was observed. The sorption data fitted well to the Langmuir model within the concentration range studied. Grape stalks proved to be the most efficient sorbent followed by yohimbe bark, cork and olive stones. N. Fiol is the recipient of the 2002 ACE Environmental Chemistry Award     

Heavy metals and parasitic geohelminths toxicity among geophagous pregnant women: a case study of Nakuru Municipality,Kenya

Environmental Geochemistry and Health - Geophagia is defined as deliberate consumption of earths’ materials, e.g. soil, clay and soft stones. The practice is widespread among pregnant women,...     

Experimental investigations on the stability of riprap layers on overtoppable earthdams

In Germany small dams (<10 m) on flood retention reservoirs are often provided with an overtoppable dam section for flood relief. In case of overtopping a protection of the dam body is absolutely mandatory as the mainly cohesive dam material is not capable to withstand the affecting erosive forces of the flow. There is a big number of possibilities how to protect the dam whilst overtopping. Some of the most common construction types of slope protection layers for a sufficient dam protection such as riprap and placed stones, have been tested in large scale physical models at the Hydraulic Laboratory at Universität Stuttgart. Thereby different experiments for the failure scenarios “erosion of single stones”, “sliding of the protection layer” as well as “disruption of the protection layer” have been conducted and analysed aiming to find some design criteria for the construction of such dams.     

On the biology of Berthellina citrina (Gastropoda: Opisthobranchia) and its defensive acid secretion

The opisthobranch gastropod Berthellina citrina (Ruppel and Leuckart, 1828¹) was collected from shallow water in the Gulf of Elat (Red Sea), where it is encountered only on sandy substrata overlaid with stones. The mollusc is nocturnal, feeds on various types of sponges, and hides during the day under stones. It releases an acid secretion (pH 1) containing sulphate and chlorine ions. This secretion is released, as a response to stimulation, from the entire body surface. In histological sections stained by standard dyes, the secretory cells remain colorless. In controlled laboratory experiments, it was found that this acid secretion protects B. citrina against all tested sea anemones, fishes, and crustaceans.     

Biomineralogy of human urinary calculi (kidney stones) from some geographic regions of Sri Lanka

Kidney stones (urinary calculi) have become a global scourge since it has been recognized as one of the most painful medical problems. Primary causative factors for the formation of these stones are not clearly understood, though they are suspected to have a direct relationship to the composition of urine, which is mainly governed by diet and drinking water. Sixty nine urinary calculi samples which were collected from stone removal surgeries were analyzed chemically for their Na, K, Ca, Mg, Cu, Zn, Pb, Fe and phosphate contents. Structural and mineralogical properties of stones were studied by XRD and FT-IR methods. The mean contents of trace elements were 1348 mg kg⁻¹ (Na); 294 mg kg⁻¹ (K); 32% (Ca); 1426 mg kg⁻¹ (Mg); 8.39 mg kg⁻¹ (Mn); 258 mg kg⁻¹ (Fe); 67 mg kg⁻¹ (Cu); 675 mg kg⁻¹ (Zn); 69 mg kg⁻¹ (Pb); and 1.93% (PO₄³⁻). The major crystalline constituent in the calculi of Sri Lanka is calcium oxalate monohydrate. Principal component analysis was used to identify the multi element relationships in kidney stones. Three components were extracted and the first component represents positively correlated Na-K-Mg-PO₄³⁻ whereas the␣second components represent the larger positively weighted Fe–Cu–Pb. Ca–Zn correlated positively in the third component in which Mn–Cu correlated negatively. This study indicates that during the crystallization of human urinary stones, Ca shows more affinity towards oxalates whereas other alkali and alkaline earths precipitate with phosphates.Contribution from the Environmental Geology Research Group (EGRG), Department of Geology, University of Peradeniya, Sri Lanka.     

Value of protected areas to avian persistence across 20 years of climate and land-use change

Establishing protected areas, where human activities and land cover changes are restricted, is among the most widely used strategies for biodiversity conservation. This practice is based on the assumption that protected areas buffer species from processes that drive extinction. However, protected areas can maintain biodiversity in the face of climate change and subsequent shifts in distributions have been questioned. We evaluated the degree to which protected areas influenced colonization and extinction patterns of 97 avian species over 20 years in the northeastern United States. We fitted single-visit dynamic occupancy models to data from Breeding Bird Atlases to quantify the magnitude of the effect of drivers of local colonization and extinction (e.g., climate, land cover, and amount of protected area) in heterogeneous landscapes that varied in the amount of area under protection. Colonization and extinction probabilities improved as the amount of protected area increased, but these effects were conditional on landscape context and species characteristics. In this forest-dominated region, benefits of additional land protection were greatest when both forest cover in a grid square and amount of protected area in neighboring grid squares were low. Effects did not vary with species’ migratory habit or conservation status. Increasing the amounts of land protection benefitted the range margins species but not the core range species. The greatest improvements in colonization and extinction rates accrued for forest birds relative to open-habitat or generalist species. Overall, protected areas stemmed extinction more than they promoted colonization. Our results indicate that land protection remains a viable conservation strategy despite changing habitat and climate, as protected areas both reduce the risk of local extinction and facilitate movement into new areas. Our findings suggest conservation in the face of climate change favors creation of new protected areas over enlarging existing ones as the optimal strategy to reduce extinction and provide stepping stones for the greatest number of species.     

Lek structure and territoriality in the chryxus arctic butterfly,Oeneis chryxus (Satyridae)

Summary The territorial and mating systems of the satyrid butterfly Oeneis chryxus were studied for 3 years on individually marked populations in algonquin Provincial Park, Ontario. Males defended territories in a dry open forest clearing by means of chases and spiral flights with conspecifies. Defended areas did not contain food or oviposition sites required by females. Territories were not uniformly distributed over the study area; the highest density of territories was clustered over bare ground covered with sand and small stones rather than areas of vegetation. This pattern of distribution of territories occurred during each year of the study. The patterns of occupancy of territories showed a high degree of consistency from one day to the next, some males defending a given territory for as many as 11 consecutive days. Removal experiments showed that a surplus of non-territorial males did not exist. Vacant territories in the high-density area were absorbed by neighboring males; those in the low-density area remained empty. Male size was not correlated with territory position in the study are. Wing patterning (i.e. size of spots) differed between males occupying territories on sandy/stony versus vegetated areas. The territorial and mating systems of O. chryxus resemble lek polygyny, and are more similar to some vertebrate lek systems than to hilltopping or landmark territoriality.     

Biosorption of copper from aqueous solutions by date stones and palm-trees waste

The removal of toxic metals from wastewaters by biosorption, based on the metal-binding capacities of various biological materials, has received much interest. However, the success of this approach depends on economic feasibility, which can be obtained by optimization of the environmental conditions. This paper evaluates, for the first time, the use of low-cost biosorbent (date stones (DS) and palm-tree waste (PTW)) to eliminate Cu(II) from aqueous solutions. The effect of some parameters on copper biosorption has been studied using date stones and palm-tree waste as solid sorbents. Results show that the highest percentage of copper adsorption was obtained for the smallest size of the sorbent particles. The biosorption process was found to occur rapidly, i.e. the maximum sorption capacity was reached within 20 min. The process involved pseudo-second-order kinetics with an activation energy value within the normal range considered for processes, where a physical interaction between the sorbate and the sorbent solid predominated. The thermodynamic parameters of the copper ions uptake onto the solid sorbents indicated that, the process was endothermic and proceeds spontaneously from the date stones. However, the thermodynamic studies of the adsorption of copper on palm-tree waste indicated that the process was exothermic and proceeds spontaneously.     

Inherent Rarity in Community Restoration

Abstract: We explore the implications of an often overlooked fact in community restoration: most species, in real or synthetic communities, are infrequent or rare, a phenomenon we call "inherent rarity." Whether from long-term interactions of many factors affecting birth, death, and establishment within natural communities, or from short-term interactions of recently created communities, species abundance distributions are roughly lognormal or even more attenuated. The greater the predisturbance species diversity of remnants or the planting diversity of restorations, and the smaller the area of a habitat patch, the more likely a large proportion of species will exist in populations so small that they are acutely or chronically vulnerable to local extinction. We suggest that habitat fragmentation will inevitably favor plants and animals that are highly mobile, early successional species, including many exotic weeds among plants, or species that are historically organized as metapopulations that happen to be common enough to function as such. We further explore rationales for countering the effects of inherent rarity, including connectivity from buffers, corridors, and stepping stones, and dominance suppression from seasonally appropriate mowing, grazing, or fire.     

Structure of a Mediterranean cryptobenthic fish community and its relationships with habitat characteristics

In the last 10 years, several studies have been carried out on the fish fauna of the Ustica Island marine reserve, yet no investigation was specifically addressed to the cryptobenthic fish assemblage. The first task of this study, conducted along the shallow rocky reefs of Ustica, was to determine the species composition, diversity and relative density of the resident cryptobenthic fishes. Furthermore, we aimed to assess the effects of some macro- and microscale habitat characteristics on the distribution pattern of fishes. In particular, the effect of predator density was indirectly evaluated by comparing density data collected within and outside the integral reserve zone. Overall, 20 species belonging to Blenniidae, Gobiidae, Tripterygiidae, Scorpaenidae and Gobiesocidae were recorded. Gobius bucchichi, Scorpaena maderensis, Tripterygion delaisi, T. melanurus and T. tripteronotus were the numerically dominant and most common species. The effects of zone (i.e. of predator density), bottom type and depth on species richness, diversity and evenness were not significant. A greater total fish density was observed on stones compared with rocky cliff and plateau, but only in the shallowest depth range. At level of single species, G. bucchichi was more abundant inside than outside the integral reserve, but only on stones and at 0–2 m depth range. Density of G. bucchichi was generally higher on stones than on rocky cliffs or plateau and between 0 and 5 m depth, although these differences were not always significant. T. delaisi was conversely more abundant in the deepest stratum (7–10 m). Canonical analyses demonstrated that bottom type and depth influenced significantly the fish assemblage structure. The observed differences in the assemblage structure relied mainly upon the dominant species. T. tripteronotus was mainly associated with rocky plateau and the intermediate depth range (3–5 m), whereas S. maderensis, T. melanurus and Lipophrys trigloides inhabited preferentially the rocky cliffs. At microscale level, the habitat choice of the investigated species was almost entirely based on whether the substrate was either vegetated or composed of bare rock. T. delaisi and T. tripteronotus were associated with substrata covered by algae, whilst G. bucchichi, S. maderensis and T. melanurus preferred bare rock bottoms. In some species, the electivity indices for the less abundant type of cover, measured at different spatial scale, changed accordingly. For instance, the smaller the size of the sampled area, the higher was the intensity of the association between G. bucchichi and Anemonia viridis.     

Postfledging Dispersal of White-crowned Pigeons: Implications for Conservation of Deciduous Seasonal Forests in the Florida Keys

From 1988 to 1991, we studied the postfledging dispersal of 31 radio-tagged White-crowned Pigeons ( Columba leucocephala ) from three natal keys in Florida Bay. Immature birds dispersed from the natal keys at 26–45 days after batching, and most young dispersed more than 20 km during the first 10 days postdispersal. Dispersing birds flew either north to the Florida mainland or east to northeast to the mainline Florida Keys. On the mainland, immature birds fed nearly exclusively within Everglades National Park or an adjacent state wildlife management area. On the mainline keys, White-crowned Pigeons selectively used 5.01–20 ha forest fragments (p < 0.10) during the first 72 hours postdispersal. After this period, dispersing birds showed no preference among fragment size classes but used deciduous seasonal forests more frequently than suburban habitat(p < 0.10). The spatial pattern of dispersal on the mainline keys suggests that, during the first 72 hours postdispersal. White-crowned Pigeons are not able to reach northern Key Largo, where 69% of the deciduous seasonal forests are protected in state or federal ownership. Protection of large forest fragments, especially on southern Key Largo, should be a priority for maintaining populations of White-crowned Pigeons. These forests provide a series of "stepping stones" that enable dispersing immature White-crowned Pigeons to fly to more distant areas where habitat availability is less restricted. This species is threatened in Florida and may play an important role in maintaining plant species diversity in the seasonal deciduous forests of south Florida by dispersing seeds of at least 37 species of trees and shrubs. Protection of sufficient habitat to allow successful postfledging dispersal of this important seed disperser will also protect the ecosystem's biodiversity.     

On how much biodiversity is covered in Europe by national protected areas and by the Natura 2000 network: insights from terrestrial vertebrates

The European Union has made extensive biodiversity conservation efforts with the Habitats and Birds Directives and with the establishment of the Natura 2000 network of protected areas, one of the largest networks of conservation areas worldwide. We performed a gap analysis of the entire Natura 2000 system plus national protected areas and all terrestrial vertebrates (freshwater fish excluded). We also evaluated the level of connectivity of both systems, providing therefore a first estimate of the functionality of the Natura 2000 system as an effective network of protected areas. Together national protected areas and the Natura 2000 network covered more than one‐third of the European Union. National protected areas did not offer protection to 13 total gap species (i.e., species not covered by any protected area) or to almost 300 partial gap species (i.e., species whose representation target is not met). Together the Natura 2000 network and national protected areas left 1 total gap species and 121 partial gap species unprotected. The terrestrial vertebrates listed in the Habitats and Birds Directives were relatively well covered (especially birds), and overall connectivity was improved considerably by Natura 2000 sites that act as stepping stones between national protected areas. Overall, we found that the Natura 2000 network represents at continental level an important network of protected areas that acts as a good complement to existing national protected areas. However, a number of problems remain that are mainly linked to the criteria used to list the species in the Habitats and Birds Directives. The European Commission initiated in 2014 a process aimed at assessing the importance of the Birds and Habitats Directives for biodiversity conservation. Our results contribute to this assessment and suggest the system is largely effective for terrestrial vertebrates but would benefit from further updating of the species lists and field management.     

Concentration effect of trace metals in Jordanian patients of urinary calculi

Due to the increase in the number of urinary calculi disease cases in Jordan, stone samples were collected from patients from various Jordanian hospitals (Princes Basma (PBH), King Abdullah University (KAUH), Al-Basheer (ABH) and Al-Mafraq (AMH)). This study concentrates on the effect of trace metals in patients of urinary calculi. Trace metals were detected in 110 urinary calculi samples using X-ray fluorescence (XRF) and atomic absorption spectroscopy (AAS) techniques. Of the calculi examined, 21 were pure calcium oxalate (CaOax), 29 were mixed calcium oxalate/uric acid, 23 were mixed calcium oxalate/phosphate (apatite), 25 were phosphate calculi (apatite/struvite), five were mixed calcium oxalate monohydrate/struvite, four were urate calculi (mixed ammonium acid urate/sodium acid urate) and three were pure cystine calculi. The concentration measurement of Ca and other trace metals levels has been found useful in understanding the mechanism of stone formation and in evaluating pathological factors. It has been found that Ca is the main constituent of the urinary calculi, especially those stones composed of calcium oxalate and calcium phosphate. The concentration of most of the trace metals that were analyzed was (Ca = 48.18, Na = 1.56, K = 0.9, Mg = 3.08, Fe = 1.17, Al = 0.49, Zn = 0.7, Cu = 0.19, Mn = 0.029, P = 10.35, S = 1.88, Sr = 0.306, Mo = 0.2, Cr = 0.146, Co = 0.05, Ni = 0.014)%. In conclusion, metals concentration in Jordanian patient’s urinary calculi samples was higher than its equivalents of other patients’. It has been noted that there is no concentration of toxic trace elements (like Li, V, Pb, Cd, and As). Some heavy metals, however, were detected Mo, Cr, Co and Ni as traces. P and S ions are present in few calculi stones as traces.