Utility of Mitochondrial DNA Barcodes in Species Conservation

Abstract:  Molecular tools are a standard part of many conservation studies and can be informative at many different levels of analysis, although there are inherent limitations and strengths of different genes or parts of genes to inform specific questions. Animal DNA barcodes, 600- to 800-base-pair segments of the mitochondrial gene cytochrome oxidase I, have been proposed as a means to quantify global biodiversity. Although mitochondrial (mt) DNA has a long history of use at the species level, recent analyses suggest that the use of a single gene, particularly mitochondrial, is unlikely to yield data that are balanced, universally acceptable, or sufficient in taxonomic scope to recognize many species lineages. Mitochondrial and nuclear genomes have different patterns of evolution and modes of inheritance, which can result in very different assessments of biodiversity. The ramifications of choosing a particular definition of species (species concept) need to be carefully considered because current efforts have designated DNA barcodes as the universal species concept without demonstrating its superiority over preexisting concepts. The results of such a barcoding paradigm may include a failure to recognize significant portions of biodiversity or nuclear/mitochondrial mixed lineages and could spuriously focus conservation resources on populations with relatively minor mtDNA divergence. DNA barcodes are most likely to provide potentially useful information for groups that are already well studied, and such taxa do not constitute the majority of biodiversity or those in most need of research attention. DNA barcode-length sequences are an important source of data but, when used alone or out of context, may offer only a fraction of the information needed to characterize species while taking resources from broader studies that could produce information essential to robust and informed conservation decisions.     

A Freshwater Classification Approach for Biodiversity Conservation Planning

Abstract:  Freshwater biodiversity is highly endangered and faces increasing threats worldwide. To be complete, regional plans that identify critical areas for conservation must capture representative components of freshwater biodiversity as well as rare and endangered species. We present a spatially hierarchical approach to classify freshwater systems to create a coarse filter to capture representative freshwater biodiversity in regional conservation plans. The classification framework has four levels that we described using abiotic factors within a zoogeographic context and mapped in a geographic information system. Methods to classify and map units are flexible and can be automated where high-quality spatial data exist, or can be manually developed where such data are not available. Products include a spatially comprehensive inventory of mapped and classified units that can be used remotely to characterize regional patterns of aquatic ecosystems. We provide examples of classification procedures in data-rich and data-poor regions from the Columbia River Basin in the Pacific Northwest of North America and the upper Paraguay River in central South America. The approach, which has been applied in North, Central, and South America, provides a relatively rapid and pragmatic way to account for representative freshwater biodiversity at scales appropriate to regional assessments.     

Conservation Assessment of Southern South American Freshwater Ecoregions on the Basis of the Distribution and Genetic Diversity of Crabs from the Genus Aegla

Abstract:  We assessed the conservation priority of 18 freshwater ecoregions in southern South America on the basis of Aegla (genus of freshwater crabs) genetic diversity and distribution. Geographical distributions for 66 Aegla species were taken from the literature and plotted against ecoregions and main river basins of southern South America. Species richness and number of threatened and endemic species were calculated for each area. To assess taxonomic and phylogenetic diversity, we generated a molecular phylogeny based on DNA sequences for one nuclear (28S) and 4 mitochondrial (12S, 16S, COI, and COII) genes. All species richness and phylogenetic methods agreed, to a large extent, in their rankings of the importance of conservation areas, as indicated by the Spearman's rank correlation coefficient ( p < 0.01); nonetheless, some of the lowest correlations were observed between taxonomic and phylogenetic diversity indices. The 5 ecoregions of the Laguna dos Patos Basin (Eastern Brazil), Central Chile, South Brazilian Coast, Chilean Lakes, and Subtropical Potamic Axis (northern Argentina and southern Uruguay and Paraguay) had the highest biodiversity scores. Conservation of these regions will preserve the largest number of species and the greatest amount of genetic diversity within the South American freshwater Aegla fauna. Biodiversity across rivers and within areas was heterogeneously distributed in the ecoregions of Upper Paraná, Ribeira do Iguape, Upper Uruguay, and South Brazilian Coast (i.e., one river showed significantly more biodiversity than any other river from the same ecoregion), but homogeneously distributed in the other ecoregions. Hence, conservation plans in the former regions will potentially require less effort than plans in the latter regions.     

Effectiveness of Environmental Surrogates for the Selection of Conservation Area Networks

Abstract:  Rapid biodiversity assessment and conservation planning require the use of easily quantified and estimated surrogates for biodiversity. Using data sets from Québec and Queensland, we applied four methods to assess the extent to which environmental surrogates can represent biodiversity components: (1) surrogacy graphs; (2) marginal representation plots; (3) Hamming distance function; and (4) Syrjala statistical test for spatial congruence. For Québec we used 719 faunal and floral species as biodiversity components, and for Queensland we used 2348 plant species. We used four climatic parameter types (annual mean temperature, minimum temperature during the coldest quarter, maximum temperature during the hottest quarter, and annual precipitation), along with slope, elevation, aspect, and soil types, as environmental surrogates. To study the effect of scale, we analyzed the data at seven spatial scales ranging from 0.01° to 0.10° longitude and latitude. At targeted representations of 10% for environmental surrogates and biodiversity components, all four methods indicated that using a full set of environmental surrogates systematically provided better results than selecting areas at random, usually ensuring that ≥90% of the biodiversity components achieved the 10% targets at scales coarser than 0.02°. The performance of surrogates improved with coarser spatial resolutions. Thus, environmental surrogate sets are useful tools for biodiversity conservation planning. A recommended protocol for the use of such surrogates consists of randomly selecting a set of areas for which distributional data are available, identifying an optimal surrogate set based on these areas, and subsequently prioritizing places for conservation based on the optimal surrogate set.     

Conservation Science and Forest Service Policy for Roadless Areas

Abstract:  Questions persist regarding whether the science of conservation biology can successfully affect environmental decision making. One of the most prominent fields of intersection between conservation science and environmental policy is public-lands debates in the United States. I reviewed the role of conservation science in the roadless-area policies of the U.S. Forest Service. Since 1971, the Forest Service has systematically evaluated roadless areas on national forests three times, most recently during the Clinton administration's Roadless Area Conservation Review (1998–2000) ( U.S. Department of Agriculture Forest Service 2000b ). Drawing on the agency's environmental impact statements and supporting documents and the internal records of conservation organizations, I examined the changing goals, methodology, and outcome of roadless-area advocacy and policy. Since the 1970s, conservation science has successfully informed public and administrative concern for roadless-area protection. Conservation science has transformed public discourse regarding roadless areas and has changed the scope and rationale of national conservation organizations' goals for roadless-area policy from protecting some to protecting all remaining national forest roadless areas. The Forest Service has increasingly drawn on the lessons of conservation biology to justify its methodology and its administrative recommendations to protect roadless areas. The 2000 Roadless Area Conservation Review resulted in a recommendation to protect all remaining national forest roadless areas, up from 22% of roadless areas in the first roadless review. Despite the scientific merits of recent roadless-area advocacy and policy, however, such initiatives have faced political difficulties. The emphasis on large-scale, top-down, national approaches to conservation policy has rendered such policies politically problematic.     

Influence of Representation Targets on the Total Area of Conservation-Area Networks

Abstract:  Systematic conservation planning typically requires specification of quantitative representation targets for biodiversity surrogates such as species, vegetation types, and environmental parameters. Targets are usually specified either as the minimum total area in a conservation-area network in which a surrogate must be present or as the proportion of a surrogate's existing spatial distribution required to be in the network. Because the biological basis for setting targets is often unclear, a better understanding of how targets affect selection of conservation areas is needed. We studied how the total area of conservation-area networks depends on percentage targets ranging from 5% to 95%. We analyzed 12 data sets of different surrogate distributions from 5 regions: Korea, Mexico, Québec, Queensland, and West Virginia. To assess the effect of spatial resolution on the target-area relationship, we also analyzed each data set at 7 spatial resolutions ranging from 0.01°× 0.01° to 0.10°× 0.10°. Most of the data sets showed a linear relationship between representation targets and total area of conservation-area networks that was invariant across changes in spatial resolution. The slope of this relationship indicated how total area increased with target level, and our results suggest that greater surrogate representation requires significantly more area. One data set exhibited a highly nonlinear relationship. The results for this data set suggest a new method for setting targets on the basis of the functional form of target-area relationships. In particular, the method shows how the target-area relationship can provide a rationale for setting targets solely on the basis of distributional information about surrogates.     

Sensitivity of Systematic Reserve Selection to Decisions about Scale, Biological Data, and Targets: Case Study from Southern British Columbia

Abstract:  The identification of conservation areas based on systematic reserve-selection algorithms requires decisions related to both spatial and ecological scale. These decisions may affect the distribution and number of sites considered priorities for conservation within a region. We explored the sensitivity of systematic reserve selection by altering values of three essential variables. We used a 1:20,000–scale terrestrial ecosystem map and habitat suitability data for 29 threatened vertebrate species in the Okanagan region of British Columbia, Canada. To these data we applied a reserve-selection algorithm to select conservation sites while altering selection unit size and shape, features of biodiversity (i.e., vertebrate species), and area conservation targets for each biodiversity feature. The spatial similarity, or percentage overlap, of selected sets of conservation sites identified (1) with different selection units was ≤40%, (2) with different biodiversity features was 59%, and (3) with different conservation targets was ≥94%. Because any selected set of sites is only one of many possible sets, we also compared the conservation value (irreplaceability) of all sites in the region for each variation of the data. The correlations of irreplaceability were weak for different selection units (0.23 ≤ r ≤ 0.67), strong for different biodiversity features ( r = 0.84), and mixed for different conservation targets ( r = 0.16; 0.16; 1.00). Because of the low congruence of selected sites and weak correlations of irreplaceability for different selection units, recommendations from studies that have been applied at only one spatial scale must be considered cautiously.     

生物多样性保护及其研究进展（综述）

由于人口的增长和人类经济活动的加剧,致使生物多样性受到了严重的威胁,引起国际社会的普遍关注．生物多样性是生物及其与环境形成的生态复合体以及与此相关的各种生态过程的总和,具有十分重要的价值,是人类生存的物质基础．各国政府和有关的国际组织积极投入到保护生物多样性的全球行动中．为了促进保护工作,国内外都开展了相关的研究工作．综观该领域的研究现状,可以看出以下７个方面已成为当前生物多样性研究的热点：①生物多样性的调查、编目及信息系统的建立;②人类活动对生物多样性的影响;③生物多样性的生态系统功能;④生物多样性的长期动态监测;⑤物种濒危机制及保护对策的研究;⑥栽培植物与家养动物及其野生近缘的遗传多样性研究;⑦生物多样性保护技术与对策．结合我国的具体情况,建议优先考虑以下４个方面的研究：①生物多样性的调查、编目与动态监测;②物种濒危机制及保护对策的研究;③生物多样性的生态系统功能与生态系统管理;④栽培植物与家养动物及其野生近缘的遗传多样性研究．     

关于制定我国区域生物多样性中心评价标准的思考

本文针对目前环境保护的热点之一——全球和地区性生物多样性保护,对其中的一个基础理论问题,即区域生物多样性评价标准进行了探索;从理论上对制定这一标准的必要性、可行性、生物多样性的基本内涵、区域生物多样性中心标准的意义及标准制定的原则和依据进行了阐述,并在此基础上提出了我国区域生物多样性中心标准的基本框架。     

Assessment of forest vegetation and conservation priorities of communities in part of Nanda Devi Biosphere Reserve,West Himalaya. Part I

In most protected areas of the Indian Himalayan region site/habitat characteristics, community diversity and distribution pattern, vegetation composition (richness of native and endemic species), structural patterns, economic importance of forest communities and community priorities have rarely been studied. Therefore, the present study has focused on these in the buffer zone of Nanda Devi Biosphere Reserve. Seventy-six woody species (trees: 24; shrubs: 52) and 13 forest communities have been recorded between 2300–3800 m asl. Tree density ranged from 533–1220 ind ha-¹, tree basal area from 14.68-80.28 m²ha-¹ and shrub density from 1490–6695 ind ha-¹. Mean density of trees was significantly lower in temperate forests in comparison to subalpine forests. Richness of trees ranged from 3–18 and shrubs from 5–29. Species diversity (H') of trees ranged from 0.45-2.08 and shrubs from 0.90-3.14. In the temperate zone, species richness and altitude had significant positive correlations whereas in the subalpine zone the two variables were negatively correlated. The native species were high in the area (> 65% species) and in communities (> 70% species), and was highest for the Picea smithiana-Pinus wallichiana mixed community, whereas the maximum numbers of natives and endemic species were recorded in the Pinus wallichiana community. The density and richness of non-natives were found to be significantly lower in comparison to the natives. Economic importance and conservation value of the communities were assessed and communities prioritized. Monitoring of the identified habitats, species, populations and communities, and development of appropriate strategies for their conservation and management are suggested.     

Priorities for Improving the Scientific Foundation of Conservation Policy in North America

Abstract:  The Society for Conservation Biology (SCB) can enhance conservation of biodiversity in North America by increasing its engagement in public policy. Toward this end, the North America Section of SCB is establishing partnerships with other professional organizations in order to speak more powerfully to decision makers and taking other actions—such as increasing interaction with chapters—geared to engage members more substantively in science-policy issues. Additionally, the section is developing a North American Biodiversity Blueprint, which spans the continental United States and Canada and is informed by natural and social science. This blueprint is intended to clarify the policy challenges for protecting continental biodiversity, to foster bilateral collaboration to resolve common problems, and to suggest rational alternative policies and practices that are more likely than current practices to sustain North America's natural heritage. Conservation scientists and practitioners can play a key role by drawing policy makers' attention to ultimate, as well as proximate, causes of biodiversity decline and to the ecological and economic consequences of not addressing these threats.     

Economic Valuation of Biodiversity Conservation: the Meaning of Numbers

Abstract:  Recognition of the need to include economic criteria in the conservation policy decision-making process has encouraged the use of economic-valuation techniques. Nevertheless, whether it is possible to accurately assign economic values to biodiversity and if so what these values really represent is being debated. We reviewed 60 recent papers on economic valuation of biodiversity and carried out a meta-analysis of these studies to determine what factors affect willingness to pay for biodiversity conservation. We analyzed the internal variables of the contingent-valuation method (measure of benefits, vehicle of payment, elicitation format, or timing of payment) and anthropomorphic, anthropocentric and scientific factors. Funding allocation mostly favored the conservation of species with anthropomorphic and anthropocentric characteristics instead of considering scientific factors. We recommend researchers and policy makers contemplate economic valuations of biodiversity carefully, considering the inherent biases of the contingent-valuation method and the anthropomorphic and anthropocentric factors resulting from the public's attitude toward species. Because of the increasing trend of including economic considerations in conservation practices, we suggest that in the future interdisciplinary teams of ecologists, economists, and social scientists collaborate and conduct comparative analyses, such as we have done here. Use of the contingent-valuation method in biodiversity conservation policies can provide useful information about alternative conservation strategies if questionnaires are carefully constructed, respondents are sufficiently informed, and the underlying factors that influence willingness to pay are identified.     

生物多样性研究进展

生物多样性是自然资源中的一个重要组成部分。在最近的40年内,生物多样性的研究发展很迅速,有关多样性的测定方法已形成了数十个数学模型和多样性指数。生物多样性的功能也研究得比较多,生物多样性的保护技术也已逐渐系统化,并开始了持续利用和合理开发的研究。     

中国生物多样性保护立法现状与需求

生物多样性保护依赖于健全的国际立法和国家立法。中国已颁布一系列有关生物多样性保护的法律和条例。这些法规的实施，使生物多样性保护工作取得重大进展，但还存在许多不足和空白。本文概述了中国在生物多样性保护方面的立法现状，在此基础上，针对存在问题，并根据《生物多样性公约》要求，从生态系统、物种和遗传多样性保护３个层次上阐明需要完善和加强法规建设的若干方面和需求。     

论生物多样性的保护问题

当前，任何地区的生物多样性都是自然和社会因素长期综合作用所造成。生物多样性最丰富的地区不一定全部由顶极植被所覆盖，而常常是一些包括所有演替类型的地方。本文通过讨论自然环境的变化和人类生产活动对不同区域景观的影响，探讨有关生物多样性的保护问题。     

Enhancement of Farmland Biodiversity within Set-Aside Land

Abstract:  The efficacy of agricultural set-aside policies for protecting farmland biodiversity is widely debated. Based on a meta-analysis of 127 published studies, we found that land withdrawn from conventional production unequivocally enhances biodiversity in North America and Europe. The number of species of birds, insects, spiders, and plants is 1–1.5 standard deviation units higher on set-aside land, and population densities increase by 0.5–1 standard deviation units. Set-aside land may be especially beneficial for desirable taxa because North American bird species that have exhibited population declines react most positively to set-aside agricultural land. Larger and older plots protect more species and higher densities, and set-aside land is more effective in countries with less-intensive agricultural practices and higher fractions of land removed from production. Although policies specifically designed to protect biodiversity might work even better, current incentives clearly improve the standing of plants and animals in farmland.     

Conservation of Deep Pelagic Biodiversity

Abstract:  The deep ocean is home to the largest ecosystems on our planet. This vast realm contains what may be the greatest number of animal species, the greatest biomass, and the greatest number of individual organisms in the living world. Humans have explored the deep ocean for about 150 years, and most of what is known is based on studies of the deep seafloor. In contrast, the water column above the deep seabed comprises more than 90% of the living space, yet less than 1% of this biome has been explored. The deep pelagic biota is the largest and least-known major faunal group on Earth despite its obvious importance at the global scale. Pelagic species represent an incomparable reservoir of biodiversity. Although we have yet to discover and describe the majority of these species, the threats to their continued existence are numerous and growing. Conserving deep pelagic biodiversity is a problem of global proportions that has never been addressed comprehensively. The potential effects of these threats include the extensive restructuring of entire ecosystems, changes in the geographical ranges of many species, large-scale elimination of taxa, and a decline in biodiversity at all scales. This review provides an initial framework of threat assessment for confronting the challenge of conserving deep pelagic biodiversity; and it outlines the need for baseline surveys and protected areas as preliminary policy goals.     

Warfare in Biodiversity Hotspots

Abstract:  Conservation efforts are only as sustainable as the social and political context within which they take place. The weakening or collapse of sociopolitical frameworks during wartime can lead to habitat destruction and the erosion of conservation policies, but in some cases, may also confer ecological benefits through altered settlement patterns and reduced resource exploitation. Over 90% of the major armed conflicts between 1950 and 2000 occurred within countries containing biodiversity hotspots, and more than 80% took place directly within hotspot areas. Less than one-third of the 34 recognized hotspots escaped significant conflict during this period, and most suffered repeated episodes of violence. This pattern was remarkably consistent over these 5 decades. Evidence from the war-torn Eastern Afromontane hotspot suggests that biodiversity conservation is improved when international nongovernmental organizations support local protected area staff and remain engaged throughout the conflict. With biodiversity hotspots concentrated in politically volatile regions, the conservation community must maintain continuous involvement during periods of war, and biodiversity conservation should be incorporated into military, reconstruction, and humanitarian programs in the world's conflict zones.     

Ecological-Economic Modeling for Biodiversity Management: Potential, Pitfalls, and Prospects

Abstract:  Ecologists and economists both use models to help develop strategies for biodiversity management. The practical use of disciplinary models, however, can be limited because ecological models tend not to address the socioeconomic dimension of biodiversity management, whereas economic models tend to neglect the ecological dimension. Given these shortcomings of disciplinary models, there is a necessity to combine ecological and economic knowledge into ecological-economic models. It is insufficient if scientists work separately in their own disciplines and combine their knowledge only when it comes to formulating management recommendations. Such an approach does not capture feedback loops between the ecological and the socioeconomic systems. Furthermore, each discipline poses the management problem in its own way and comes up with its own most appropriate solution. These disciplinary solutions, however, are likely to be so different that a combined solution considering aspects of both disciplines cannot be found. Preconditions for a successful model-based integration of ecology and economics include (1) an in-depth knowledge of the two disciplines, (2) the adequate identification and framing of the problem to be investigated, and (3) a common understanding between economists and ecologists of modeling and scale. To further advance ecological-economic modeling the development of common benchmarks, quality controls, and refereeing standards for ecological-economic models is desirable.