DNA甲基化结合蛋白

DNA甲基化是哺乳动物细胞中最重要的表观遗传学修饰之一,大约70%—80%的CpG发生这种甲基化修饰.异常的甲基化在许多癌症中频发,启动子CpG岛的高甲基化作为普遍的失活机制介导抑癌基因沉默.甲基化信号由甲基化结合蛋白来转译,它们能够特异性识别并结合至甲基化位点通过募集辅阻遏复合物例如组蛋白去乙酰化酶(Histone Deacetylase,HDAC)等建立沉默的染色质,从而在DNA甲基化和基因沉默中起桥梁作用.目前,哺乳动物中已鉴定出的甲基化结合蛋白有三类,分别是:MBD(Methyl-CpG-Binding Domain)、Kaiso以及SRA(Set and Ring finger-associated)家族.本文就这三大家族(以MBD为主)各自的结构、功能、结合甲基化DNA的特性以及它们在某些疾病发生中的作用做一综述.     

背角无齿蚌不同组织的基因组DNA甲基化分析

用甲基化敏感扩增多态性(MSAP)对背角无齿蚌(Anodonta woodiana)腮、唇瓣、闭壳肌、外套膜和斧足五个组织基因组DNACCGG区域的甲基化水平进行了分析.结果表明,背角无齿蚌腮基因组DNA甲基化比例为47.9%,唇瓣甲基化比例为35.5%,闭壳肌甲基化比例为50%,外套膜甲基化比例为46.3%,斧足甲基化比例为56%;基因组中CCGG区域存在甲基化现象.不同组合甲基化比例不同说明该区域甲基化可能参与到基因的调控中.通过比较不同地点的采集的背角无齿蚌,发现污染严重地区(太湖三山岛水域)采集到的样品和非污染地区(南泉养殖水域)采集的蚌样甲基化区域略有变化.其中的相关性有待进一步的研究.     

不同浓度Cd~(2+)对鲤鱼基因组DNA的影响

鲤鱼(建鲤品种)幼鱼暴露于4个浓度组(0.005、0.05、0.5、5mg/L)的镉离子(Cd~(2+))2d,期间各组的个体均无死亡.用10个RAPD引物对处理后鲤鱼基因组进行扩增,亦未发现有明显的差异扩增条带.但在用甲基化敏感扩增多态性方法研究暴露后鲤鱼肌肉组织的基因组DNA甲基化的变化时发现,5mg/L的Cd~(2+)在d2会使鲤鱼基因组DNA中CCGG区域甲基化发生明显的变化.该组个体1mol后出现大量死亡.另外,0.05mg/L和0.5mg/L Cd~(2+)组个体基因组DNA中CCGG区域甲基化比例2d内略有下降,甲基化位点没有太大改变.说明鲤鱼幼鱼基因组CCGG区域的胞嘧啶甲基化比例在不同浓度Cd~(2+)处理中都比较稳定.低浓度Cd~(2+)条件下鲤鱼主要通过甲基化区域的微调减少Cd~(2+)的生理毒性.高浓度Cd~(2+)处理下,利于基因组DNA甲基化区域发生相当的变化,可能导致一些沉默基因的异常表达.图2表2参31     

铅对人Bel-7402肝癌细胞毒性及EGFP基因DNA甲基化的影响

以体外培养人Bel-7402肝癌细胞为模型,研究铅的3种常见化合物氯化铅(Pb Cl2)、乙酸铅(Pb(CH3COO)2)、硝酸铅(Pb(NO3)2)的细胞毒性和去甲基化表观遗传毒性。应用MTS方法检测细胞的存活率,以前期研究建立的评价方法评价铅化合物的去甲基化表观遗传毒性。结果显示,Pb Cl2、Pb(CH3COO)2、Pb(NO3)2均会抑制Bel-7402细胞的增值,计算求得Pb Cl2、Pb(CH3COO)2、Pb(NO3)2相应的50%细胞存活浓度(IC50)值分别为2 524μmol·L~(-1)、1 977μmol·L~(-1)、1 899μmol·L~(-1);80%细胞存活浓度(IC80)值分别为264μmol·L~(-1)、221μmol·L~(-1)、281μmol·L~(-1),通过对3种染毒物不同染毒浓度的细胞存活率进行随机区组设计的方差分析显示3种化合物间的差异无统计学意义(F=0.11;P=0.897)。去甲基化表观遗传毒性检测结果显示,Pb Cl2、Pb(CH3COO)2、Pb(NO3)2均可观察到明显的去甲基化表观遗传毒性,其相对于5-氮杂-2-脱氧胞苷(5-Aza-Cd R)的去甲基化表观遗传毒性当量分别为2.82E-03、1.50E-03、5.09E-04,三者间也无显著性差异。结果表明,铅化合物会使Bel-7402细胞的细胞存活率和转染进细胞的质粒上增强型绿色荧光蛋白基因启动子的DNA甲基化水平下降。     

汞的微生物甲基化与去甲基化机理研究进展

甲基汞具有强烈的生物毒性和生物积累性,环境中甲基汞的产生主要与微生物相关,同时微生物也能通过去甲基化作用使甲基汞转变为无机汞.然而,目前国内外研究主要集中在汞的甲基化机理及影响因素,对汞的微生物去甲基化研究甚少.本文综述了汞的微生物甲基化、去甲基化研究史,以及微生物的主要作用机理,并对相关研究进行了展望,指出微生物酶促甲基化与氧化去甲基化机理研究将是以后工作的重点.     

金矿区中国林蛙体内DNA甲基化水平

采集金矿附近山区河流水质、沉积物和当地两栖类动物中国林蛙样品,应用高效液相色谱仪测定污染区和对照区林蛙体内各组织器官的胞嘧啶(c)和5-甲基胞嘧啶(5-mc)含量,探讨因金矿开采引起的汞污染以及对林蛙体内组织器官DNA甲基化水平的变化,研究汞胁迫下,两栖类动物体内分子水平的影响。结果表明:金矿开采区河流水质和沉积物已受到甲基汞污染,污染区林蛙体内甲基汞含量远高于对照区;林蛙体内各组织器官中DNA甲基化水平发生不同的变化:污染区林蛙肝脏和皮肤中DNA甲基化水平高于对照区,肌肉和脑干DNA甲基化水平低于对照区;雄性林蛙肝脏和脑干DNA甲基化水平高于雌性,肌肉和皮肤DNA甲基化水平却低于雌性。以上结果说明汞胁迫下,中国林蛙体内组织器官DNA甲基化水平可以发生一定的变化,环境中重金属汞离子进入林蛙体内含量的不同,可以促进或抑制其体内甲基化水平的变化,引起基因毒性作用。     

运动对2,3,7,8-四氯二苯并二恶英急性暴露大鼠肝脏抗氧化能力的影响

观察8周中等强度游泳运动对2,3,7,8-四氯二苯并二恶英(2,3,7,8-tetrachlorodibenzo-p-dioxin,2,3,7,8-TCDD)急性暴露大鼠肝脏氧化应激的影响。以8周龄雄性Sprague Dawley大鼠为研究对象,将大鼠随机分为玉米油静养组(NC组)、玉米油运动组(EC组)、TCDD静养组(NT)和TCDD运动组(ET组)。将TCDD溶于玉米油中,NT和ET组大鼠按照10μg·kg-1(以单位体重计)腹腔注射TCDD,NC和EC组大鼠注射等量玉米油。正式实验开始后,EC和ET组大鼠进行运动(尾部负重5%游泳30min),每周运动5 d,共8周,NC和NT组大鼠不进行任何运动干预。8周后,称重并宰杀大鼠,收集血清和肝组织样本,待测血清天门冬氨酸氨基转移酶(AST)、丙氨酸氨基转移酶(ALT)的活性;肝组织丙二醛(MDA)含量,超氧化物歧化酶(SOD)、过氧化氢酶(CAT)以及谷胱甘肽过氧化物酶(GSH-Px)的活性。将数据进行多因素方差分析,结果表明,染毒可升高大鼠血清AST的活性,增加肝脏MDA的含量,降低肝脏SOD、CAT和GSH-Px的活性;运动可降低大鼠肝脏GSH-Px的活性;染毒后运动可减少肝脏MDA的含量,升高肝脏SOD、CAT和GSH-Px的活性。研究表明,TCDD急性暴露可导致大鼠肝细胞功能受损,导致大鼠肝脏发生氧化应激。8周有氧运动改善TCDD急性暴露诱导的肝细胞损伤,改善肝脏氧化应激,这可能是运动改善TCDD肝毒性的机制之一。     

典型水污染区环境样品的去甲基化表观遗传毒性初步研究

从去甲基化能力方面研究地表水、地下水、土壤等环境样品综合表观遗传毒性。将pEGFP-C3质粒通过人工甲基化处理获得荧光蛋白基因启动子区处于高甲基化状态的C3质粒,并将其转染进人类HepG-2肝癌细胞株,随后以该改造细胞株(EGFPHepG2)为主要工具载体,与样品提取液进行共培养,依据细胞绿色荧光强度来定量评价样品的去甲基化功能的强弱(简称EGFP方法)。同时通过电感耦合等离子体质谱法(ICP/MS)对样品提取液的成分进行扫描检测分析。结果表明,在9个测试样中,有7个显示出可以观察到的去甲基化表观遗传毒性,占测试样品的78%。其去甲基化表观遗传毒性当量介于0.065~0.257μmol·L-1的5-Aza-CdR之间。在4个存在超标的土壤或底泥样品中,有3个被检测出具有可以观察到的去甲基化表观遗传毒性,环境样品表观遗传毒性检测结果也与环境分析结果具有基本一致的趋势。结果初步显示,部分环境样品去甲基化能力较强,具有不容忽视的表观遗传毒性。     

运动对急性暴露于2,3,7,8-四氯二苯并二恶英大鼠肝组织酶活性的影响

为了研究运动对2,3,7,8-四氯二苯并二恶英(2,3,7,8-TCDD)急性暴露大鼠肝组织酶活性的影响,将40只雄性Wistar大鼠随机分为正常对照组(NC)、染毒组(NT)、运动对照组(EC)、运动染毒组(ET)。染毒组(NT组与ET组)腹腔注射10μg·kg-1(以单位体重计)的TCDD,对照组(NC组与EC组)腹腔注射等量的玉米油;NT、NC组静养4周,ET、EC组运动(尾部负重5%游泳30分钟)4周。4周后,称重并宰杀大鼠,分离肝组织,称重后-80℃保存待测7-乙氧基异吩恶唑酮脱乙基酶(EROD)、7-乙氧基香豆素-O-脱乙基酶(ECOD)及芳香烃羟化酶(AHH)的活性。将数据进行多因素方差分析(MAVONA)处理,结果表明,染毒可降低大鼠体重,增加肝湿重和肝相对重量、增加EROD、ECOD活性;运动可增加大鼠肝相对重量、增加AHH的活性;染毒后运动可降低EROD、ECOD的活性。结论:急性10μg·kg-1(以单位体重计)TCDD染毒后4周可增加大鼠肝相对重量;4周的运动能有效降低TCDD对EROD、ECOD活性的激活作用。     

低浓度阿特拉津长期暴露对鲫鱼DNA的影响

运用随机扩增多态性DNA(RAPD)技术在分子生物学水平上评价了低浓度阿特拉津长期暴露对鲫鱼DNA的影响.结果表明:0.006mg·L-1以上浓度(试验浓度系列为0.006、0.023、0.094、0.375、1.5、3mg·L-1)的阿特拉津持续暴露60d均会对鲫鱼的DNA产生影响;经筛选,确定有34条引物能够扩增出鲫鱼基因组DNA,其中有8条引物能检测出阿特拉津对鲫鱼基因组DNA影响的差异:各浓度组鲫鱼DNA的RAPD扩增产物条带均出现不同程度缺失;在较低浓度长期暴露下阿特拉津对鲫鱼基因组DNA的损伤无明显的剂量-效应关系,阿特拉津毒性在0.375mg·L-1时突然增强,但这一趋势并未向更高浓度组延续(1.5mg·L-1组表现出的毒性弱于0.375mg·L-1组和3mg·L-1组).     

Effects of Nonylphenol on immune function of female Sprague-Dawley rats

Nonylphenol (NP) is the final biodegradation product of nonylphenol polyethoxylates, which are widely used as surfactants in domestic and industrial products. NP was reported to exert estrogenic actions and shown to potentially adversely affect reproductive functions. However, NP influence on immune system function remains unclear. To address this issue, the effects of NP on spleen and thymus were examined in this study. Female Sprague-Dawley rats were treated with NP orally at doses of 0, 20, 80, or 200 mg/kg respectively. Data showed that NP increased the levels of natural killer (NK) cells and natural killer T (NKT) cells in peripheral blood and decreased the levels of interleukin-4 (IL-4) and interferon gamma (IFN-γ) in serum. These findings suggest that exposure to NP by oral route may induce adverse effects on the spleen and thymus and affect the immune function of female rats.     

DNA adducts in fish following an oil spill exposure

On 12 December 1999, one third of the load of the Erika tanker, amounting to about 10,000 t crude oil flowed into sea waters close to the French Atlantic Coast. This oil contained polycyclic aromatic compounds (PAC) that are known to be genotoxic. Genotoxic effects induce DNA adducts formation, which can thus be used as pollution biomarkers. Here, we assessed the genotoxic impact of the “Erika” oil spill by DNA adducts detection in the liver of immature fishes (Solea solea) from four locations of the French Brittany coasts. Two months after the spill, a high amount of DNA adducts was found in samples from all locations, amounting to 92–290 DNA adduct per 10⁹ nucleotides. Then total DNA adduct levels decreased to reach about 50 adducts per 10⁹ nucleotides nine months after the spill. In vitro experiments using human cell cultures and fish liver microsomes evidence the genotoxicity of the Erika fuel. They also prove the formation of reactive species able to create DNA adducts. Furthermore, in vitro and in vivo DNA adducts fingerprints are similar, thus confirming that DNA adducts are a result of the oil spill.     

Effect of selenium on mercury methylation in facultative lake sediments

The effect of selenium (Na₂SeO₃) on the methylation of mercury (HgCl₂) in facultative sediment was studied. The results showed that small amount of selenium (0.25 μg/g) added to the sediment could significantly reduce the net methylation rate of mercury. The more the selenium was added, the higher the inhibition effect was. These results made the addition of selenium to the aquatic systems more practical and safe as a way to alleviate mercury accumulation in fish. Additionally, higher temperature was favorable to the net methylation of mercury, and high concentration of methylmercury emerged earlier.     

Epigenetic effect of long-term bisphenol A exposure on human breast adenocarcinoma cells

In this research, epigenetic effects of bisphenol A (BPA) on human breast cancer MCF-7 cells were analyzed. Genome-wide DNA methylation and gene expression were analyzed in MCF-7 cells exposed to BPA (10^?5 and 10^?6 mol/L for 5 weeks). No significant changes in the global level of 5-methyl-2′-deoxycytidine and 5-hydroxymethyl-2′-deoxycytidine were observed. DNA methylation profiling analysis indicated that BPA exposure resulted in the hypermethylation of FOXK2, LKB1, LMX1A and CUGBP2 and the hypomethylation of PTPRN2, TRIM27, BCAS3 and ZNF423. Decreased expression of apoptosis genes (P38 and BCL2L1) and increased expression of chemokine (Cxcl2 and ccl20) were detected. Changes of these genes were speculated to affect the ERα-related cell growth as well as cell apoptosis.     

低质量浓度苯酚连续暴露对罗非鱼基因组DNA的影响

苯酚是中国地表水中的第一大类污染物,对水生生态环境存在一定的生态风险。RAPD技术是一种新型基因差异分析技术,具有简单灵敏和快速的优点;微核试验简便、快速、可靠,已经成为筛选化学诱变物的经典的短期试验方法。运用RAPD技术和外周血嗜多染红细胞微核试验分析评价了低质量浓度苯酚连续暴露对罗非鱼(Oreochromis aurea)DNA的影响,为保护罗非鱼的种质资源、提高罗非鱼的质量安全提供依据。RAPD试验结果表明:在12个能扩增出罗非鱼基因组DNA的引物中,引物S327能检测出0.005mg?L-1以上质量浓度苯酚暴露前后罗非鱼基因组DNA的差异,而小于0.002mg?L-1质量浓度的苯酚对罗非鱼基因组DNA没有影响。外周血嗜多染红细胞微核试验结果表明:在一定质量浓度的苯酚连续暴露后,0.005mg?L-1以下的质量浓度组罗非鱼外周血红细胞微核率与对照组相比没有显著的差异(P>0.05),而0.01mg?L-1以上的质量浓度组可诱导罗非鱼外周血红细胞产生微核。微核率与对照组相比差异显著(P<0.05),表现出明显的剂量-效应和时间-效应关系。研究表明苯酚在一定的条件下可对鱼类DNA产生影响。     

Predicting the acute lethality of a chlorinated benzene mixture in soils: a comparison of solid-phase microextraction,body residue,and solvent extraction techniques

When predicting the adverse effect(s) of chemical pollution on an exposed organism, a measurement of body residue is often considered a more accurate estimate of dose than those estimates derived from a solvent extraction or solid-phase microextraction of the polluted exposure medium. The magnitude of this perceived difference in accuracy, and thus the accuracy of the corresponding toxicity prediction, were investigated in the present two-phase study. In Phase I, an acute lethality response was correlated with dose estimates derived from body residue, solvent extraction, and SPME. In Phase II, acute lethality was predicted from Phase I data. The accuracy of Phase II toxicity predictions was determined by comparing predicted mortality to observed mortality. Although this study revealed that body residue indeed provided the most accurate prediction of toxicity, the margin of this comparatively greater accuracy suggests that alternative methods may provide equally viable dose estimates and, subsequently, equally viable toxicity predictions.