Planktonic bacteria in the Humber Estuary; Seasonal variation in population density and heterotrophic activity

Seasonal variation in population density and heterotrophic activity (as maximum potential rate, V _max, for glucose mineralization) of bacteria attached to suspended solids, of free bacteria and of total bacteria was examined in the water of the Humber Estuary, north-east England. At the principal site, which was studied over 2 yr, values of density and activity of attached and total bacteria showed marked seasonal periodicity, being low in summer and high from autumn to spring. This was a consequence of density of attached bacteria being dependent on the concentration of suspended solids, which was high in winter and low during summer. Values of density and activity of free bacteria, which were less than those of attached bacteria, showed no seasonal pattern but fluctuated irregularly and were independent of concentration of suspended solids. At two further sites, which were studied over 1 yr only, the density of bacteria varied seasonally in a similar manner, but the activity of attached and total bacteria showed no distinct seasonal pattern — this may, however, be due to limitations of the data rather than to fundamental differences between the sites studied.     

Comparison between the carbon-14 and oxygen consumption method for the determination of the activity of heterotrophic bacterial populations

The activity of the heterotrophic microbial population in the saline Lake Grevelingen (The Netherlands) and the Mediterranean Etang Salses Leucate (France) was determined by measuring the oxygen consumption rate, and the uptake of ¹⁴C-labelled glycollate, pyruvate and an amino acid mixture. The maximum uptake rate of the applied organic compounds in Lake Grevelingen was generally less than 10% of the carbon mineralization rate calculated from the oxygen consumption experiments. Only for pyruvate and glycollate higher values were found of about 30 to 40% with one exceptionally high value for pyruvate of 149%. However, these higher percentages were found in winter, when the activity of the heterotrophic microbial population was very low. In Etang Salses Leucate higher maximum uptake rates of the ¹⁴C-labelled compounds were found, relating this uptake to the oxygen consumption rate. Yet the maximum uptake rate is still always lower than 35% of the carbon mineralization calculated from the oxygen uptake rate. Taking into account that maximum uptake rates were considered, the results demonstrate that the uptake of ¹⁴C-labelled organic compounds represents a serious underestimation of the activity of the bacterial population in situ. The extent of the underestimation depends on the water type. It was concluded that the determination of the heterotrophic activity by measuring oxygen consumption rates offers a better insight into the carbon mineralization process in natural waters than the uptake experiments with ¹⁴C-labelled substrates.Communication no. 228 of the Delta Institute for Hydrobiological Research, Yerseke, The Netherlands     

Heterotrophic activity associated with particulate size fractions in a Spartina alterniflora salt-marsh estuary,Sapelo Island,Georgia, USA,and the continental shelf waters

An investigation was undertaken to determine the distribution and activity of the heterotrophic microplankton associated with particles from a Georgia salt marshestuarine ecosystem to the western edge of the Sargasso Sea. Heterotrophic activity was determined by the uptake of ¹⁴C-glucose. More than 80% of the activity was associated with detritus greater than 3 m in creek, river and coastal (within 4 km of shore) waters. In the Gulf Stream, approximately 80% of the heterotrophic activity was in the fraction less than 3 m. In the estuary, total heterotrophic activity fluctuated with the tides; the greatest activity occurred near low ebb tide at all locations. The lowest activity was measured at slack low and high tides. In creek water most of the heterotrophic activity was associated with particles between 14 and 180 m, whereas in coastal waters (less than 4 km from shore) most of the activity was in the fraction greater than 180 m.Contribution No. 331 from the University of Georgia Marine Institute, Sapelo Island, Georgia 31327, USA.     

Micro-analysis of nitrogen transport and conversion inside activated sludge flocs using microelectrodes

To investigate the nitrogen transport and conversion inside activated sludge flocs, micro-profiles of O₂, NH₄⁺, NO₂^–, NO₃^–, and pH were measured under different operating conditions. The flocs were obtained from a laboratory-scale sequencing batch reactor. Nitrification, as observed from interfacial ammonium and nitrate fluxes, was higher at pH 8.5, than at pH 6.5 and 7.5. At pH 8.5, heterotrophic bacteria used less oxygen than nitrifying bacteria, whereas at lower pH heterotrophic activity dominated. When the ratio of C to N was decreased from 20 to 10, the ammonium uptake increased. When dissolved oxygen (DO) concentration in the bulk liquid was decreased from 4 to 2 mg·L^-1, nitrification decreased, and only 25% of the DO influx into the flocs was used for nitrification. This study indicated that nitrifying bacteria became more competitive at a higher DO concentration, a higher pH value (approximately 8.5) and a lower C/N.     

1株贫营养好氧反硝化菌的分离鉴定及其脱氮特性

从水库底泥样品中,以硝酸盐为唯一氮源进行驯化、分离筛选出1株能在贫营养及好氧条件下进行高效反硝化的菌株PY8,经过电镜形态学观察、生理生化和16S rDNA序列分析,并基于16SrDNA序列结果,构建了该菌株的系统发育树,最终确定菌株PY8为根瘤菌Rhizobiumsp.。考察了初始pH值、温度、C/N、初始硝酸钠质量浓度、投菌量对菌株PY8硝酸盐还原活性的影响,以及该菌株的异养硝化性能。结果表明,在pH6.0～10.0,温度25～30℃,C/N1.0～9.0,初始硝酸钠质量浓度0.01～0.50g·L-1,投菌量1%～15%时,菌株PY8培养72h后的硝氮去除率可达到95%以上。另外,该菌株具有同时硝化-反硝化作用,在培养过程中氨氮去除率可达到58%左右。实验结果表明,菌株PY8在微污染水体生物脱氮领域中具有很大的应用潜力。     

Determination of the Manning roughness coefficient influenced by vegetation in the river Aa and Biebrza river

The aim of this study was to investigate the variation of channel bed roughness in two rivers, as important parameter in hydraulic modelling especially with regard to flood control. The universities of Ghent (UG) and Antwerp (UA) are conducting scientific research in the river Aa in Belgium and the Biebrza river in Poland in order to better understand the phenomena involved and to come to a more accurate determination of the different parameters influencing flow. In this paper, the determination of the roughness coefficient ‘n’ from the Manning equation is used. This coefficient is not easy to determine and is varying constantly. It is influenced by the meandering character of the river, the bed material and the average grain size, the channel bed forms, the channel obstructions, the geometry changes between sections and the vegetation in the channel. Furthermore, due to these parameters, the roughness of the channel is not equally distributed over the channel, the banks and the floodplains. So, using literature data does not always lead to satisfactory results, due to the different situation in the field (Werner et al. J Hydrol 314:139–157, 2005). Therefore, measurements are necessary to determine the variation of the Manning coefficient. The Manning coefficient is a function of the discharge, but will also vary over the time due to the mentioned influences. In a multidisciplinary research project on the fundamental exchange processes in river ecosystems, hydraulic measurements were performed on a regular base in the river Aa. During these measurement campaigns, velocity and discharge measurements were carried out in multiple cross-sections. Once a month, the discharge and the water levels were measured at the upstream and the downstream end of the test stretch. On the river Biebrza, similar intensive measurement campaigns took place along a 6 km stretch in the upstream part of the river. An accurate determination of the Manning coefficient according a seasonal variation is an important tool in hydraulic modelling.     

Distribution and structure of heterotrophic protist communities in the northeast equatorial Pacific Ocean

The distribution and structure of heterotrophic protist communities and size-fractionated chlorophyll a were studied during the Korea Deep Ocean Study 98 (KODOS 98) research expedition (July 1998) in the northeast equatorial Pacific Ocean (5–11°N). Areas of convergence and divergence formed at the boundaries of the South Equatorial Current (SEC), North Equatorial Current (NEC), and North Equatorial Counter Current (NECC) during the expedition. Water column physicochemical characteristics significantly influenced the size structure of heterotrophic protist communities. Intense vertical mixing and high nutrient and chlorophyll a concentrations characterized SEC and NECC areas, which were affected by converging and diverging water masses, respectively. Nanophytoplankton dominated in SEC and NECC areas; both areas also had relatively high heterotrophic protist biomasses (average 743 µg C m^–2). NEC areas were characterized by a stratified vertical structure, low nutrient and chlorophyll a concentrations, and picophytoplankton dominance. The heterotrophic protist biomass in NEC areas averaged 414 µg C m^–2; nanoprotists (<20 µm) dominated the community. The nanoprotist biomass comprised 49–54% of the total heterotrophic protist biomass in SEC/NECC areas and 67–72% in NEC areas. The biomass of heterotrophic protists was higher in SEC/NECC areas than in NEC areas, but the relative importance of nanoprotists was greater in NEC areas than in SEC/NECC areas. Heterotrophic dinoflagellates were dominant components of the <20 µm and >20 µm size classes in both water columns. The biomass of heterotrophic protists significantly correlated with the net-, nano-, and picophytoplankton biomass in SEC/NECC areas and with the nano- and picophytoplankton biomass in NEC areas. Heterotrophic protists and phytoplankton also showed strong positive correlation in the study area. The size structure of the phytoplankton biomass coincided with that of heterotrophic protists; the heterotrophic protist biomass positively correlated with the protists prey source. These relationships suggest that the community structure of heterotrophic protists and the microbial food web depended on size classes within the phytoplankton biomass. Microzooplankton grazing and phytoplankton growth rates were higher in SEC/NECC areas than in NEC areas. In contrast, the potential primary production grazed by microzooplankton was relatively high in NEC areas (127.3%) compared with SEC/NECC areas (94.6%). Our results indicate that the relative importance and size structure of heterotrophic protists might vary according to two distinct water column structures.Communicated by T. Ikeda, Hakodate     

Calorific,ash, carbon and nitrogen content in relation to length and dry weight of Parathemisto gaudichaudi (Amphipoda: Hyperiidea) in the North East Atlantic Ocean

The calorific, ash, carbon and nitrogen content, length and dry weight were determined for the hyperiid Parathemisto gaudichaudi (Guerin). Regression equations for all these variables were determined so that they can be estimated by calculation from measurements of length of the hyperiid. Mean values for total nitrogen and carbon were 7.79±0.85% and 36.80±4.18% of the dry weight, respectively. The carbon to calorific equivalent for P. gaudichaudi was 10.37 kcal g^-1 carbon (9.13 kcal g^-1 when corrected for nitrogen). The calorific value for ash-free adult P. gaudichaudi was 5.138 kcal g^-1±1.309 (4.510 kcal g^-1 when corrected for nitrogen). This large variation in the calorific content (coefficient of variation of 25.84%) can be accounted for largely by variation in the ash content (coefficient of variation of 21.84%). The calorific value determined for P. gaudichaudi is similar to that measured for other carnivorous crustaceans and adds support to the hypothesis that animals with high calorific content have a low fecundity and an energy-rich store which can be used as a buffer during unfavourable periods in their life.     

High recovery of culturable bacteria from the surfaces of marine algae

The culturability of heterotrophic marine bacteria obtained from the surfaces of two species of marine algae (Lobophora variegata andHalimeda copiosa) was assessed by comparing total DAPI-stained cell counts to colony-forming bacterial counts on two agar media. The colony-forming bacterial counts on a low-nutrient medium (LN) consisting of seawater and agar were significantly greater for both algal species than counts obtained on a high-nutrient medium (HN) similar in composition to that typically used for the isolation of heterotrophic marine bacteria. On average, 14 and 58%, respectively, of the total bacteria fromL. variegata andH. copiosa were culturable on LN. These recovery rates far exceed those typically reported for marine bacteria. Of 119 LN strains obtained in pure culture, 55% failed to grow on HN. The yeast extract component of HN (1.5 gl^-1) was responsible for the majority of the observed inhibition, suggesting that this nutrient can be highly toxic to marine bacteria. Eighty-nine percent of the strains inhibited by HN were capable of growth when the nutrients in this medium were diluted by a factor of 100 with seawater. Of 66 epiphytic strains, 30 (45%) initially inhibited by HN showed the ability to adapt to this medium after a period of laboratory handling. The initial inability of low-nutrient-adapted bacteria to grow on high-nutrient media may be due to nutrient shock. The results presented here indicate that the culturability of specific populations of marine bacteria can be dramatically improved by the use of low-nutrient media. Further, the importance of developing new medium formulations that eliminate traditional nutrients, some of which are clearly toxic to bacteria, is demonstrated.     

Spatial connectivity in a large river system: resolving the sources and fate of dissolved organic matter

Large rivers are generally heterogeneous and productive systems that receive important inputs of dissolved organic matter (DOM) from terrestrial and in situ sources. Thus, they are likely to play a significant role in the biogeochemical cycling of the DOM flowing to the oceans. The asymmetric spatial gradient driven by directional flow and environmental heterogeneity contributes to the fate of DOM flowing downstream. Yet, the relative effects of spatial connectivity and environmental heterogeneity on DOM dynamics are poorly understood. For example, since environmental variables show spatial heterogeneity, the variation explained by environmental and spatial variables may be redundant. We used the St. Lawrence River (SLR) as a representative large river to resolve the unique influences of environmental heterogeneity and spatial connectivity on DOM dynamics. We used three-dimensional fluorescence matrices combined with parallel factor analysis (PARAFAC) to characterize the DOM pool in the SLR. Seven fluorophores were modeled, of which two were identified to be of terrestrial origin and three from algal exudates. We measured a set of environmental variables that are known to drive the fate of DOM in aquatic systems. Additionally, we used asymmetric eigenvector map (AEM) modeling to take spatial connectivity into account. The combination of spatial and environmental models explained 85% of the DOM variation. We show that spatial connectivity is an important driver of DOM dynamics, as a large fraction of environmental heterogeneity was attributable to the asymmetric spatial gradient. Along the longitudinal axis, we noted a rapid increase in dissolved organic carbon (DOC), mostly controlled by terrestrial input of DOM originating from the tributaries. Variance partitioning demonstrated that freshly produced protein-like DOM was found to be the preferential substrate for heterotrophic bacteria undergoing rapid proliferation, while humic-like DOM was more correlated to the diffuse attenuation coefficient of UVA radiation.     

Observations of heterotrophic activity on photoassimilated organic matter

The natural heterotrophic utilization of released and particulate photoassimilated compounds by natural phytoplankton populations was followed during the summer of 1975 in the Kiel Bight (Western Baltic Sea). Phytoplankton exudates (2 to 21% of primary production) seem to represent an important substrate for heterotrophic bacteria: uptake rates between 8 and 17,5%/h were observed. Samples incubated with antibiotics indicated that the heterotrophic uptake of phytoplankton exudates during photosynthesis could lead to underestimation of the release rate. Production of 14_{CO 2}was used as an estimate of the mineralization of particulate photoassimilated matter. The mineralization rates measured were in the range of 6 to 20% after 20 h. In order to confirm the quantitative measurements, micro-autoradiographic examinations of the samples were performed.     

Enzyme activities of marine bacteria involved in Laminaria-thallus decomposition and the resulting sugar release

The extracellular decomposing enzyme activities of marine bacteria, including 60 and 16 strains of Laminaria-thallus decomposing bacteria (LDB) and non-LDB, respectively, were determined against several algal polysaccharides. A number of LDB decomposed alginate, fucoidan, and cellulose, but not laminarin. Clear decomposing activity was not observed in the culture supernatant from nutrient broth, but was detected in that from a Laminaria-thallus medium, suggesting that decomposing enzymes were induced. During the incubation of LDB in Laminaria-thallus medium, depolymerized sugar materials with a wide range of molecular size were released into the culture fluid. Total sugars released into the culture fluid after 4 d of incubation amounted to a maximum of 95% of the initial content in the thallus tissues. These findings suggest that microbial decomposition of Laminaria thallus in sea water could be a good source of carbohydrates which may support the heterotrophic growth of marine organisms.     

淮北市采煤塌陷区土壤养分状况

研究了淮北市采煤塌陷区内湿地(南湖湿地、东湖湿地)、园林绿地、耕地3种土地利用类型土壤的养分含量情况.结果显示:湿地中受人为干扰强烈的南湖湿地土壤全氮量为1.128g/kg,显著高于园林绿地,与人为干扰弱的东湖湿地和耕地无显著差异;湿地有机质含量南湖为23.781 g/kg,东湖为11.250 g/kg,二者之间无差异...     

Diel variation of TCO2 in the upper layer of oceanic waters reflects microbial composition,variation and possibly methane cycling

Six diel TCO₂ cycles determined by infrared (IR) photometry from five drift stations occupied between 24 February and 16 March 1979 in the mixed layer of the northwestern Caribbean Sea are examined. Comparison of TCO₂ variation with coincident salinity and O₂ variation demonstrated that TCO₂ often co-varied with these independently measured variables. During five diel cycles TCO₂ variation was characterized by nocturnal production and diurnal consumption. The inverse, diurnal production of CO₂, occurred downstream from Misteriosa Bank, whose corals apparently contributed to a water mass having a twofold increase of POC and a sixfold larger population of heterotrophic nanoplankters. For the five diel studies carried out in waters with balanced or nearly blanced heterotrophic and phototrophic components of the nanoplankton, CO₂ consumption at constant salinity always occurred between 06.00 and 09.00 hrs. Net uptake often continued through 15.00 hrs, but not always in the absence of significant salinity changes. At constant salinity net O₂ evolution never exceeded 0.5 mol l^-1 h^-1 while net CO₂ uptake consistently averaged 3 mol l^-1 h^-1 for an apparent net production of 36 mg C m^-3 h^-1, which greatly exceeds the O₂ changes and open ocean ¹⁴C estimates from the literature. Diurnal consumption was apparently balanced by nocturnal production of CO₂ so that no significant net daily change in TCO₂ was observed. Departures from theoretical PQ and RQ and the possibility of nocturnal variations in formaldehyde and carbonate alkalinity imply that chemotrophs, both methane producers and methane oxidizers, play a significant role in CO₂ cycling. This could be through the metabolism of the nonconservative gases CH₄, CO, and H₂, and a link between chemotrophy and phototrophy through these gases is hypothesized. These open system measurements were subject to diffusion and documentable patchiness, but temporal TCO₂ changes appear to indicate the net direction of microbiological activity and join a growing body of literature showing dynamic variation in CO₂ and O₂ that exceeds estimates by ¹⁴C bottle assays of carbon fixation.     

华南滨海小流域降雨入渗对地下水的补给分析

以华南滨海小流域——中山大学滨海水循环试验基地（试验基地）作为研究区,在对该流域地下水和雨水分别进行采样、实验分析的基础上,利用氯量平衡法（CMB）与地下水动态法计算了该流域的降雨入渗补给系数与给水度。研究发现,试验基地地下水主要受降雨补给,地下水埋深在雨季（4—9月）、旱季（10—3月）的变动范围大致为0～1.5 m与0～0.5 m。根据CMB计算结果,补给区、中间区雨季降雨入渗补给系数分别为旱季的1.3～1.6倍和1.3～2.0倍,且补给区大于中间区（M5井除外）。利用地下水动态法计算次降雨入渗补给系数,所得雨季、旱季的均值（7.6%和4.6%）与CMB计算结果（7.7%和5.3%）较为接近。给水度、雨强与入渗补给系数均存在一定的线性关系。将地下水埋深分别与降雨入渗补给量及潜水蒸发量进行多项式拟合对比,发现降雨入渗对地下水的最大入渗补给埋深约为2.3 m,当埋深为3.1 m时,地下水可获得最大净补给量。     

Acetylene reduction (nitrogen fixation) in a Delaware,USA salt marsh

Acetylene reduction (nitrogen fixation) was measured in several vegetational areas in a Delaware, USA salt marsh. Samples were collected for 1 yr and the results showed a seasonally variable pattern of acetylene reduction at all stations. Peak rates were generally recorded during the later summer and early fall (September–October). The seasonality was influenced mainly, although not exclusively, by the soil temperature. In addition, samples collected in short Spartina alterniflora stands exhibited rates which were up to 20-fold higher than those found in samples from tall S. alterniflora stands. Over 50% of the total yearly ethylene production occurred from mid-August until the beginning of December at the tall and short S. alterniflora stations. Maximum activity occurred at 5 cm depth for all stations. Surface activity accounted for only 3–4% of the total measured in the top 20 cm. Addition of glucose or mannitol resulted in considerable increases in activity, thus suggesting that heterotrophic acetylene reduction is carbon and/or energy limited. The results obtained in this study indicate that the measured rates are only potential rates and that considerable caution must be used in extrapolating from acetylene reduction rates to nitrogen fixation rates in situ.     

冷藏技术对发光细菌活性及毒性测试性能的影响

由于发光细菌的在线毒性监测技术受到了细菌生物活性稳定性保持问题的制约,探索一种脱脂牛奶菌悬液冷藏复苏方法,以提高发光细菌活性的保持时间。比较了明亮发光杆菌新鲜菌液冷藏、冻干粉菌悬液冷藏和脱脂牛奶菌悬液冷藏对发光细菌生物活性的影响,同时,比较了不同渗透压调节液对菌悬液急性毒性测试的灵敏度和稳定性的影响。结果表明,质量分数为25%的脱脂牛奶可提高发光细菌生物活性的稳定性,菌悬液冷藏7d后复苏,相对发光率仍可达92%。2%NaCl和10%蔗糖为渗透压调节液时,冷藏至第7天的发光细菌脱脂牛奶菌悬液对重金属毒性测试的灵敏度,与新鲜菌液基本相同,但添加蔗糖降低了其对有机物的测试灵敏度。利用发光细菌脱脂牛奶冷藏菌悬液对Zn~(2+)进行连续7d的毒性测试,EC_(50)的变异系数小于15%,结果稳定性良好。     

Repeatability of physiological traits in juvenile Pacific abalone, Haliotis discus hannai

Several studies on individual physiological traits assume that past records may predict future performance. Marine mollusks, as other animals, show a wide range of between- and within-individual variation of physiological traits. However, in this group, almost nothing is known about the relative influence of genetic factors on that variation. Repeatability (R) is a measure of the consistency of the variation of a trait, which includes its genetic variance and represents the maximum potential value of its heritability (h ²). Traits that show high inter-individual variation and high repeatability levels could potentially evolve through selection (natural or artificial). We estimated the repeatability [using intra-class (τ) and Pearson-moment (r) correlation coefficients] of several physiological traits related to energy acquisition and allocation in juvenile Pacific abalone Haliotis discus hannai, maintained under controlled environment growing systems. In order to estimate the range of the R values and the effect of the time elapsed between measurements on these estimates, we measured these traits monthly during 6 months for each individual. Among the physiological traits, those related to energy allocation like oxygen consumption (standard metabolic rate, SMR) and ammonium excretion rates, and oxygen/nitrogen ratio (O/N), showed intermediate levels of repeatability (0.48, 0.55 and 0.39, respectively), when this was estimated by τ coefficient. However, the r estimation showed that SMR and O/N repeatability were significant and high (0.6–0.7 and 0.5–0.7, respectively) during the first 5 consecutive measurements, decreasing strongly (0.3 and 0.2, respectively) during the last measurement. For ammonia excretion, although repeatability (r) decreased from 0.8 to 0.5 during the 6 consecutive measurements, they remain significant during the experimental period. Therefore, our results indicate that for H. discus hannai juveniles, physiological traits like SMR, ammonia excretion and O/N are significantly repeatable (i.e. good predictors of future measurements) during a period of 4–5 months. These significant repeatability values suggest an important genetic control upon the phenotypic variation of these physiological traits, and could potentially respond to natural or artificial selection, and be used in genetic improvement programs. By contrast, those traits related to energy acquisition (i.e. ingestion, absorption and assimilation) and physiological efficiencies (i.e. net growth and scope for growth) showed very low levels of repeatability (0–0.07). This indicates that the phenotypic variation of these traits would be more influenced by environment rather than by genetic factors.     

Evidence of high organotrophic potentiality of bacteria in the deep ocean

The organotrophic potentiality of heterotrophic microorganisms 50 cm above the ocean floor (5,207 m depth) was measured in situ, at a station in the subarctic Pacific Ocean (44° N; 154° E). In certain enriched deep-sea samples incubated in situ, the microorganisms exhibited nearly the same organotrophic activity as those in the surface water layers. Rod-shaped barophilic bacteria (0.4 to 0.6 μ x 1.0 to 2.0 μ), which multiplied at a generation time of about 10 h, were responsible for this activity.