Habitat,movements and environmental preferences of dusky sharks,Carcharhinus obscurus,in the northern Gulf of Mexico

The dusky shark (Carcharhinus obscurus) is the largest member of the genus Carcharhinus and inhabits coastal and pelagic ecosystems circumglobally in temperate, subtropical and tropical marine waters. In the western North Atlantic Ocean (WNA), dusky sharks are overfished and considered vulnerable by the International Union for the Conservation of Nature. As a result, retention of dusky sharks in commercial and recreational fisheries off the east coast of the United States (US) and in the northern Gulf of Mexico is prohibited. Despite the concerns regarding the status of dusky sharks in the WNA, little is known about their habitat utilization. During the summers of 2008–2009, pop-up satellite archival tags were attached to ten dusky sharks (one male, nine females) at a location where they have been observed to aggregate in the north central Gulf of Mexico southwest of the Mississippi River Delta to examine their movement patterns and habitat utilization. All tags successfully transmitted data with deployment durations ranging from 6 to 124 days. Tag data revealed shark movements in excess of 200 km from initial tagging locations, with sharks primarily utilizing offshore waters associated with the continental shelf edge from Desoto Canyon to the Texas/Mexican border. While most sharks remained in US waters, one individual moved from the northern Gulf of Mexico into the Bay of Campeche off the coast of Mexico. Sharks spent 87 % of their time between 20 and 125 m and 83 % of their time in waters between 23 and 30 °C. Since dusky sharks are among the most vulnerable shark species to fishing mortality, there is a recovery plan in place for US waters; however, since they have been shown to make long-distance migrations, a multi-national management plan within the WNA may be needed to ensure the successful recovery of this population.     

Fine-scale population structure of estuarine bottlenose dolphins (Tursiops truncatus) assessed using stable isotope ratios and fatty acid signature analyses

Stable isotope ratios and fatty acid signature analyses were employed to examine the fine-scale population structure of a year-round resident population of 600–800 bottlenose dolphins (Tursiops truncatus) in the Indian River Lagoon (IRL), Florida. The IRL, a 250-km-long estuary running along the central east coast of Florida (28.0°N, 80.6°W), is comprised of the northern and southern IRL, Mosquito Lagoon (ML), Banana River (BR), and St. Lucie Estuary. Samples of skin and blubber were collected from dead stranded (n = 61, 1994–2004) and live dolphins (n = 153, 2002–2007, 2010, 2011) from throughout the IRL and surrounding environs. Using stable isotopes (SI), dolphins could be assigned to a ML subpopulation, a St. Lucie Estuary subpopulation, and an IRL subpopulation. Fatty acid signature analysis (FASA) allowed for finer resolution, detecting ML and BR subpopulations, a separation of northern and southern IRL subpopulations, and a St. Lucie Estuary subpopulation. Differences between sexes were detectable within subpopulations using FASA, but not using SI. This may indicate that males and females are foraging in similar locations at a similar trophic level (detected using SI), but are varying in the types or proportions of specific prey (indicated by FASA). The combination of these complementary analyses results in a powerful tool for assessing fine-scale population substructure.     

Suitability of the coastal waters of Sri Lanka for offshore sand mining: a case study on environmental considerations

In Sri Lanka, the total demand for sand is about 12,000,000 m³ per year with a demand growth projected to increase by 10 % every year. However, Sri Lanka’s construction industry seems to face a shortage of sand if offshore sand mining is not promoted as a viable alternative and over-exploitation of river sand may lead to more significant damage to rivers (which is presently a serious issue). This article discusses the suitability or otherwise of the unexplored south-eastern, east and north-western offshore areas for exploration and mining works. This study was conducted by consulting several government organizations and universities dealing with coastal resources management, literature reviews and Key Informants’ Interviews held with Fisher Folk Societies and Divers’ Organizations in the study areas. The east and north-western offshore locations are not ideal considering the bathymetry (most locations in the east coast have water depths >20 m, hence mining is not commercially viable; in the north-western offshore areas depth is <15 m; mining is prohibited in Sri Lanka at depths ≤15 m and <2 km offshore) and the occurrence of critical habitats. In the south-eastern offshore areas the complex wave climate resulting in significant coastal/shoreline stability variations is a concern and the sea is very deep (>20 m beyond 2 km offshore). Therefore, by considering the views expressed by the Divers’ Organizations and Fisher Folk societies it would be ideal to undertake exploration studies in the offshore areas in the north-eastern stretch.     

Genetic diversity and relatedness of the mangrove Rhizophora mangle L. (Rhizophoraceae) using amplified fragment polymorphism (AFLP) among locations in Florida, USA and the Caribbean

Rhizophora mangle L. is a widespread mangrove species in the Western Hemisphere. Mangrove habitat loss and their importance to coastal and reef ecosystems make greater understanding of their genetic structure useful for conservation and management. An amplified fragment polymorphism (AFLP) analysis was performed on samples from Florida and the Caribbean to discover the genetic structure present. R. mangle had variable genetic diversity not related to latitude; P ranged 7 %–92 %. Some other factor, perhaps human impact, has caused low genetic diversity in some populations. Across Florida R. mangle populations varied in genetic diversity with less diversity (G_st?=?0.195) and greater gene flow on the Atlantic coast (Nm =2.07) than on the Gulf coast (G_st?=?0.717, Nm?=?0.197). Gene flow between Caribbean islands was low (Nm?=?0.386) compared to continental populations (Nm?=?1.40), indicating that long distance dispersal is not common between islands. Analysis of molecular variance (AMOVA) analysis showed significant deviations from Hardy-Weinberg expectations at the level of region among subpopulations and overall genetic difference among subpopulations for R. mangle. One implication for management is that small continental populations and island populations may be genetically isolated and distinct from each other.     

Movements,environmental associations,and presumed spawning locations of Atlantic halibut (Hippoglossus hippoglossus) in the northwest Atlantic determined using archival satellite pop-up tags

Large Atlantic halibut (Hippoglossus hippoglossus) off the eastern coast of Canada were tagged with pop-up satellite archival transmission tags (N = 17) to track movements, determine ambient depth and temperature, and infer spawning activity. Many halibut showed seasonal movements from deepwater slope areas in fall and winter to shallower feeding grounds on the Scotian Shelf and Grand Banks in summer. Halibut depths ranged between 0 and 1,640 m. Mean temperature of occupation was 4.7 °C. Multiple short-term vertical ascents from a consistent baseline depth, characterized as spawning rises, were identified in seven of the tagged halibut south of the Grand Banks. All presumed spawning rises occurred in multiples of 2–6 events at 2- to 9-day intervals between October and January, spanning an average vertical extent of 50–100 m at depths of about 800–1,000 m. Given the direction and velocity of the slope water currents and the duration of the pelagic stage, the calculated 300–500 km drift of the eggs and larvae would take them onto the Scotian Shelf, as well as into the Gulf of St. Lawrence. Therefore, the location of the presumed spawning grounds is consistent with expectations based on migration compensation theory, the northeasterly migratory patterns of the juveniles, the relatively static distribution of the adults off southern Newfoundland, and the prevailing currents at depth.     

Foraging habitats and migration corridors utilized by a recovering subpopulation of adult female loggerhead sea turtles: implications for conservation

From 1998 to 2008, 68 adult female loggerhead sea turtles (Caretta caretta) were instrumented with platform transmitter terminals at nesting beaches in Georgia, North Carolina (NC) and South Carolina (SC) on the East Coast of the United States of America (30°48′N, 81°28′W to 33°51′N, 77°59′W). The majority of post-nesting loggerheads (N = 42, 62 %) migrated to foraging habitats in the Mid-Atlantic Bight during May–October, with a subsequent migration occurring during November–March to foraging habitats south of Cape Hatteras, NC. Nine (13 %) loggerheads initially foraged in the near-shore, coastal areas of the South Atlantic Bight, but moved to offshore habitats—closer to the Gulf Stream—during November–March, while fourteen (21 %) loggerheads remained in foraging areas along the mid-continental shelf off of the eastern coast of Florida and/or continued southward to Florida Bay and the Bahamas. The present study delineates important, post-nesting foraging habitats and migration corridors where loggerheads may interact with commercial fisheries—providing managers opportunities to develop and implement optimally effective conservation actions for the recovery of this threatened species.     

Intertidal habitat composition and regional-scale shoreline morphology along the Benguela coast

The Benguela Current Large Marine Ecosystem off southwest Africa is a regionally valued system because of its biological productivity, which supports high biomass throughout the foodweb, and a rich diversity of habitats and species. However, the region is exposed to numerous anthropogenic pressures that are likely to escalate under future economic growth. In response, the Benguela Current Commission called for a spatial biodiversity assessment (BCC-SBA) to identify conservation priorities, including potential areas for marine protected areas. The systematic conservation-planning approach to this assessment requires a fine-scale map of coastal habitats, which was not previously available for the region. Our aim was to undertake this mapping, within tight logistic and resource limitations. We used a previously derived methodology for mapping the distribution of coastal habitats from aerial imagery. The Benguela coast is approximately 5,047 km long. Half of this extent is sandy beach, a third is rocky and mixed shores, 13 % comprises lagoonal features, and the remainder (4 %) comprises estuaries and offshore islands. The distribution and extent of these coastal habitats differs substantially alongshore (i.e. with latitude), with conditions ranging north–south from hot, humid mangrove-lined lagoons, to hyper-arid coastal desert sandy beaches. Patterns in regional geology, climate and oceanography are proposed as the main drivers of spatial heterogeneity in coastal habitat types. The resulting ecological and socio-economic wealth requires proactive protection (supported through the BCC-SBA, for example), to ensure sustainable utilization of the rich natural resources, and persistence of these resources for the benefit of current and future generations.     

Seasonal changes in movements and habitat preferences of the scalloped hammerhead shark (Sphyrna lewini) while refuging near an oceanic island

Movements and habitat preferences of sharks relative to a central location are widely documented for many species; however, the reasons for such behaviors are currently unknown. Do movements vary spatially or temporally or between individuals? Do sharks have seasonal habitat and environmental preferences or simply perform movements at random at any time of the year? To help understand requirements for the designation of critical habitats for an endangered top predator and to develop zoning and management plans for key habitats, we examined vertical and horizontal movements, and determined habitat and environmental preferences of scalloped hammerhead sharks (Sphyrna lewini). We tracked seven hammerheads for 19–96 h at Wolf Island (1.38ºN, 91.82ºW) between 2007 and 2009 using ultrasonic transmitters with depth and temperature sensors, and we profiled temperature through the water column. Movements of individual hammerheads fell in two classes: constrained (remaining near the island) and dispersive (moving offshore to pelagic environments). The central activity space or kernel off the southeast side of Wolf Island was small and common to most, but the area varied among individuals (mean ± SE 0.25 ± 0.2 km²), not exceeding 0.6 km² for any of the sharks, and not changing significantly between seasons. In general, hammerheads showed preference for the up-current habitat on the eastern side of Wolf Island in both the warm and cold seasons. However, the depth of sharks varied with season, apparently in response to seasonal changes in the vertical structure of temperature. Hammerheads performed frequent vertical excursions above the thermocline during offshore movements and, in general, were observed to prefer temperatures of 23–26 °C found above the thermocline. At times, though individuals moved into the thermocline and made brief dives below it. Our results provided evidence that hammerheads (1) are highly selective of location (i.e., habitat on up-current side of island) and depth (i.e., top of the thermocline) while refuging, where they may carry out essential activities such as cleaning and thermoregulation, and (2) perform exploratory vertical movements by diving the width of the mixed layer and occasionally diving below the thermocline while moving offshore, most likely for foraging.     

Heavy metals in the polychaete Glycera longipinnis from the southwest of India

Metal concentrations in sediment and in whole tissue of the benthic polychaete Glycera longipinnis collected along the southwest coast of India were analysed. Relative seasonal accumulation of metals (Cu, Pb, Cr, Ni, Zn, Cd, Hg) was studied by categorising the habitat as less polluted or highly polluted based on metal contamination routed through industrial and urban sources. The metal content in tissues varied seasonally in the ranges, Cu: 2.21–27.08 μg·g^?1, Pb: 0.06–4.92 μg·g^?1, Cr: 1.73–29.20 μg·g^?1, Ni: 1.60–4.61 μg·g^?1, Zn: 14.72–82.30 μg·g^?1, Cd: 0.04–1.38 μg·g^?1and Hg: below decetable limits to 0.86 μg·g^?1. Concentration of heavy metals was found to be high in the whole body of G. longipinnis pooled from the polluted transects. The results of this study suggest that G. longipinnis may act as a useful biological indicator for heavy metal pollution along the southwest coast of India.     

Monitoring the movements of harbour porpoises (Phocoena phocoena) with satellite telemetry

The movements of nine harbour porpoises, Phocoena phocoena (L.), in the Bay of Fundy and Gulf of Maine were tracked using satellite telemetry. Transmitters were attached to the porpoises in August 1994 and 1995 after they were captured near Grand Manan Island at the mouth of the Bay of Fundy. Tracking periods ranged from 2 to 212 d (mean 50 ± 65 d). Porpoises exhibited a high degree of individual variation in movement patterns; five moved out of the Bay of Fundy into the Gulf of Maine. The porpoise with the longest tracking period moved extensively throughout the Gulf of Maine. These data suggest that seasonal movement patterns of individual harbour porpoises are discrete and are not temporally coordinated migrations. Porpoises that moved out of the Bay of Fundy into the Gulf of Maine did so following the 92 m isobath, which may represent an important movement corridor. The movement of porpoises from the Bay of Fundy into the Gulf of Maine supports the hypothesis that harbour porpoises from these two regions comprise a single population at risk of entanglement in both Canadian and US fisheries. Received: 4 February 1997 / Accepted: 25 August 1997     

Survival and remigration probabilities for loggerhead turtles (Caretta caretta) nesting in the eastern Gulf of Mexico

Few long-term mark-recapture tagging datasets exist to estimate population parameters for loggerhead sea turtle (Caretta caretta) recovery units. Using a two-state open robust design model, we analyzed a 20-year (1990–2009) mark-recapture dataset from the Keewaydin Island loggerhead nesting assemblage off the southwest coast of Florida (USA) in the eastern Gulf of Mexico. For this analysis, 2,292 turtle encounters were evaluated, representing 841 individual nesting turtles. Survival was estimated at 0.73 (95 % CI 0.69–0.76). This estimate is comparable with survival estimates elsewhere in the Peninsular Florida subpopulation and is among the lowest estimates for the Northwest Atlantic loggerhead population. We documented no changes in remigration rates or clutch frequency over time. These are the first survival and remigration probabilities estimated for a loggerhead nesting assemblage in the eastern Gulf of Mexico.     

Satellite tracking reveals a dichotomy in migration strategies among juvenile loggerhead turtles in the Northwest Atlantic

Few data are available on the movements and behavior of immature Atlantic loggerhead sea turtles (Caretta caretta) from their seasonal neritic foraging grounds within the western north Atlantic. These waters provide developmental habitat for loggerheads originating from several western Atlantic nesting stocks. We examined the long-term movements of 23 immature loggerheads (16 wild-caught and seven headstart turtles) characterizing their seasonal distribution, habitat use, site fidelity, and the oceanographic conditions encountered during their migrations. We identified two movement strategies: (1) a seasonal shelf-constrained north–south migratory pattern; and (2) a year-round oceanic dispersal strategy where turtles travel in the Gulf Stream to the North Atlantic and their northern dispersal is limited by the 10–15°C isotherm. When sea surface temperatures dropped below 20°C, neritic turtles began a migration south of Cape Hatteras, North Carolina (USA) where they established fidelity to the waters between North Carolina’s Outer Banks and the western edge of the Gulf Stream along outer continental shelf. Two turtles traveled as far south as Florida. Several turtles returned to their seasonal foraging grounds during subsequent summers. Northern movements were associated with both increased sea surface temperature (>21°C) and increased primary productivity. Our results indicate strong seasonal and interannual philopatry to the waters of Virginia (summer foraging habitat) and North Carolina (winter habitat). We suggest that the waters of Virginia and North Carolina provide important seasonal habitat and serve as a seasonal migratory pathway for immature loggerhead sea turtles. North Carolina’s Cape Hatteras acts as a seasonal “migratory bottleneck” for this species; special management consideration should be given to this region. Six turtles spent time farther from the continental shelf. Three entered the Gulf Stream near Cape Hatteras, traveling in the current to the northwest Atlantic. Two of these turtles remained within an oceanic habitat from 1 to 3 years and were associated with mesoscale features and frontal systems. The ability of large benthic subadults to resume an oceanic lifestyle for extended periods indicates plasticity in habitat use and migratory strategies. Therefore, traditional life history models for loggerhead sea turtles should be reevaluated.     

Mapping risk for nest predation on a barrier island

Barrier islands and coastal beach systems provide nesting habitat for marine and estuarine turtles. Densely settled coastal areas may subsidize nest predators. Our purpose was to inform conservation by providing a greater understanding of habitat-based risk factors for nest predation, for an estuarine turtle. We expected that habitat conditions at predated nests would differ from random locations at two spatial extents. We developed and validated an island-wide model for the distribution of predated Diamondback terrapin nests using locations of 198 predated nests collected during exhaustive searches at Fisherman Island National Wildlife Refuge, USA. We used aerial photographs to identify all areas of possible nesting habitat and searched each and surrounding environments for nests, collecting location and random-point microhabitat data. We built models for the probability of finding a predated nest using an equal number of random points and validated them with a reserve set (N?=?67). Five variables in 9 a priori models were used and the best selected model (AIC weight 0.98) reflected positive associations with sand patches near marshes and roadways. Model validation had an average capture rate of predated nests of 84.14 % (26.17–97.38 %, Q1 77.53 %, median 88.07 %, Q3 95.08 %). Microhabitat selection results suggest that nests placed at the edges of sand patches adjacent to upland shrub/forest and marsh systems are vulnerable to predation. Forests and marshes provide cover and alternative resources for predators and roadways provide access; a suggestion is to focus nest protection efforts on the edges of dunes, near dense vegetation and roads.     

Migratory activity by hatchling loggerhead sea turtles (Caretta caretta L.): evidence for divergence between nesting groups

The South Florida subpopulation of loggerhead sea turtles (Caretta caretta L.) nests with great fidelity on either the southeast or the southwest coast of Florida, USA. The hatchlings that emerge from those nests must swim in opposite directions and search for different surface currents to migrate away from continental shelf waters. In this laboratory study, we compared the pattern of swimming activity shown by the hatchlings from each coast over the first 6 days of migration. Turtles from both coasts were equally active during their “frenzy” period (the first 24 h of swimming) and during the daylight hours of the 5 days that followed (the “postfrenzy” period). However, the west coast turtles were significantly more active than the east coast turtles during the nocturnal portion of the postfrenzy period. This difference may be related to the greater distance southwest coast turtles must negotiate to locate surface currents for transport out of the Gulf of Mexico and into the Atlantic Ocean basin. These differing behavioral strategies may be genetically determined, as similar correspondence between activity and distance is well known among migratory populations of birds and fish and is often based upon inherited programs of endogenously driven activity. Alternatively, behavioral differences between the two nesting groups could be a manifestation of phenotypic plasticity that arises as the hatchlings respond to unique environmental cues on each coast.     

Seasonal and diel variation in movement rhythms of sand dollar, Peronella lesueuri (Valenciennes 1841), in Cockburn Sound, Western Australia

Rates and direction of movement in the sand dollar Peronella lesueuri were measured in summer and winter in Cockburn Sound, a large coastal embayment in south-western Australia. P. lesueuri was found to have a diurnal activity pattern throughout the year and had a greater movement rate in the summer (mean of 5.3 cm h^?1, day; 3.9 cm h^?1, night) than in the winter (mean of 2.7 cm h^?1, day; 2.0 cm h^?1, night). Seasonal change in temperature and physiological requirements by the sand dollar are the most likely reason for the seasonal differences. Reasons for diurnal variation were not clear. Direction of movement was found to be random at both times of the year. Based on these movement rates, one sand dollar can bioturbate an approximate area of 0.1 m² day^?1 and 36.4 m² year^?1. At a conservative density estimate of 0.5 sand dollars per m² it takes approximately 20 days for the sand dollars to rework the entire area of the sediments in the habitats they occupy.     

Marine turtle threats in Uruguayan waters: insights from 12 years of stranding data

We present the first study conducted in a wide spatio-temporal scale on marine turtles strandings (N = 1,107) over a 12-year period (1999–2010) in Uruguay. Five species were recorded Chelonia mydas (N = 643; 58.1 %), Caretta caretta (N = 329; 29.7 %), Dermochelys coriacea (N = 131; 11.8 %), Eretmochelys imbricata (N = 3; 0.3 %), and Lepidochelys olivacea (N = 1; 0.1 %). The first three species stranded throughout the Uruguayan coast, but differences in distribution patterns were detected among species. Although occurring year round, stranding records show a clear seasonal pattern with variation in monthly distribution among species, but with a peak of records in austral summer. Strandings provide indirect evidence of threats to marine turtles in Uruguayan and surrounding waters, particularly fisheries and marine debris. Our results demonstrate that Uruguayan coastal waters likely serve as a foraging or development area for at least three endangered marine turtle species in temperate waters.     

Mitochondrial control region sequence analyses indicate dispersal from the US East Coast as the source of the invasive Indo-Pacific lionfish Pterois volitans in the Bahamas

Lionfish are popular aquarium fish from the Indo-Pacific that have invaded the western Atlantic. Two species, Pterois volitans and P. miles, were well established along the United States east coast before the first lionfish were reported from the Bahamas in 2004, where they quickly dispersed throughout the archipelago by 2007. The source of the Bahamian lionfish invasion has been in question because of the hypothesized low connectivity between Florida and Bahamas reef species as well as the temporal lag in their arrival in the Bahamas. Mitochondrial control region haplotypes (680 bp) were determined and analyzed for lionfish specimens from the Bahamas, North Carolina, and two sites within their native range (Indonesia and the Philippines). Exact tests, pairwise F _st and AMOVA analyses all showed no significant differentiation between the Bahamas and North Carolina specimens. The similarity between the Bahamas and North Carolina lionfish was also reflected in a minimum spanning network and neighbor-joining distance tree generated from the data. Sequence analyses also revealed the presence of only Pterois volitans, as no P. miles were detected in the Bahamian sample. These results indicate that the source of the Bahamian lionfish is egg and larval dispersal from the United States east coast population, and support previous models of reef fish dispersal that suggest a low level of connectivity between the Bahamas and east coast of Florida.     

Discrimination of ocean wave features by hatchling loggerhead sea turtles, Caretta caretta

At the beginning of their offshore migration, hatchling sea turtles orient directly into oceanic waves as they swim away from land. Recent experiments have demonstrated that hatchlings swimming underwater can determine the propagation direction of waves by monitoring the circular movements they experience as waves pass above. During July and August 1993, we studied how loggerhead sea turtle hatchlings (Caretta caretta L.) from the east coast of Florida, USA, responded to a range of wave parameters. We constructed a wave simulator to reproduce in air the circular movements that normally occur beneath small ocean waves. Hatchlings suspended in air and subjected to these orbital movements attempted to orient into simulated waves when periods and amplitudes were similar to those found near the Florida coast. Orbital movements with longer periods (greater than 10 s), however, failed to elicit responses. The results demonstrate that hatchling loggerheads can distinguish between waves with different periods and amplitudes, and that Florida hatchlings respond most strongly to orbital movements closely resembling those of waves that occur near their natal beach. Received: 28 May 1996 / Accepted: 17 September 1996     

Horizontal movements of Atlantic blue marlin (<Emphasis Type="Italic">Makaira nigricans</Emphasis>) in the Gulf of Mexico

We examined movements of Atlantic blue marlin (Makaira nigricans) from the Gulf of Mexico based upon 42 pop-up archival transmitting (PAT) tags. Long deployments (including one 334-day track) revealed diverse movement patterns within the Gulf of Mexico. North–south seasonal changes in blue marlin distribution showed strong correspondence with established seasonal patterns of sea surface temperature and primary production. During the summer spawning season, blue marlin utilized outer shelf and shelf edge waters in the northern Gulf of Mexico, and longer duration tracks indicated overwintering habitats in the Bay of Campeche. Egress occurred throughout the year and was difficult to determine because some tracks ended in the Straits of Florida (n = 3) while other tracks recorded movement through it or the Yucatan Channel (n = 4). Our results indicate that Atlantic blue marlin have a more restricted geographic range of habitats than previously recognized and that the Gulf of Mexico provides spatially dynamic suitable habitat that is utilized year-round through seasonal movements.     

Modeling the Effects of Fishing and Implications for the Design of Marine Protected Areas: Juvenile Fish Responses to Variations in Seafloor Habitat

Abstract: A number of recent studies have linked post-settlement survivorship of Atlantic cod (  Gadus morhua ) with the complexity of the seafloor to which fish settle. Survivorship is greater in habitats of higher complexity (e.g., pebble-cobble substratum with emergent epifauna> pebble-cobble> sand), where cover provides shelter from predators. Fishing with mobile gear such as bottom trawls and dredges reduces the complexity of seafloor habitats. We used a dynamic model to (1) link patterns in habitat-mediated survivorship of post-settlement juvenile cod with spatial variations in habitat complexity, (2) simulate habitat change based on fishing activities, and (3) determine the role of marine protected areas in enhancing recruitment success. Density-dependent natural mortality was specified as three alternative functional response curves to assess the influence of different predator foraging strategies on juvenile survivorship during the first 12 months of demersal existence. We applied the model to a theoretical patch of hard-bottom substrata and to a case study based on seafloor habitat distributions at Stellwagen Bank National Marine Sanctuary (Gulf of Maine, Northwest Atlantic). Our results demonstrate that patterns in the shape of response surfaces that show the relationship between juvenile cod survivorship and density as well as movement rate were similar regardless of functional response type, that juvenile cod movement rates and post-settlement density were critical for predicting the effects of marine protected-area size on survivorship, and that habitat change caused by fishing has significant negative effects on juvenile cod survivorship and use of marine protected areas can ameliorate such effects.