Characterization of microbial communities from coastal waters using microarrays

Molecular methods, including DNA probes, were used to identify and enumerate pathogenic Vibrio species in the Chesapeake Bay; our data indicated that Vibrio vulnificus exhibits seasonal fluctuations in number. Our work included a characterization of total microbial communities from the Bay; development of microarrays that identify and quantify the diversity of those communities; and observation of temporal changes in those communities. To identify members of the microbial community, we amplified the 16S rDNA gene from community DNA isolated from a biofilm sample collected from the Chesapeake Bay in February, 2000. The resultant 75 sequences were 95% or more similar to 7 species including two recently described Shewanella species, baltica and frigidimarina, that have not been previously isolated from the Chesapeake. When the genera of bacteria from biofilm after culturing are compared to those detected by subcloning amplified 16S fragments from community DNA, the cultured sample exhibited a strong bias. In oysters collected in February, the most common bacteria were previously unknown. Based on our 16S findings, we are developing microarrays to detect these and other microbial species in these estuarine communities. The microarrays will detect each species using four distinct loci, with the multiple loci serving as an internal control. The accuracy of the microarray will be measured using sentinel species such as Aeromonas species, Escherichia coli, and Vibrio vulnificus. Using microarrays, it should be possible to determine the annual fluctuations of bacterial species (culturable and non-culturable, pathogenic and non-pathogenic). The data may be applied to understanding patterns of environmental change; assessing the health of the Bay; and evaluating the risk of human illness associated with exposure to and ingestion of water and shellfish.     

An investigation of environmental and sustainability discourses associated with the substantive purposes of environmental assessment

This paper investigates the discursive construction of the substantive purposes of environmental assessment (EA). It addresses these purposes by exploring the complex and often multifaceted linkages between political factors and plural views of democracy, public participation, and the role of science that are embedded in environmental and sustainability discourses. The interaction between policy-making and public actors leads to the formulation of divergent and potentially competing rationales for public participation, and for social appraisal more generally. Participatory approaches have also given impetus to the development of several interpretations on the role of science in assessment procedures. Science is important in mediating public participation and the two are therefore reciprocally linked. This leads to discourses that become manifest in the construction of substantive purposes. Discourse analysis in EA is a relevant method for examining trends and patterns in sustainable development. It is argued that public participation is an important, if not decisive, variable in the articulation and civil legitimacy of certain purposes. A general proposition that results from this paper is that EA, although typically presented as an objective scientific tool, is an intrinsically normative process. Enhanced knowledge on the construction, and reconstruction over time, of substantive purposes is required if environmental and sustainability discourses are to be used and understood as meaningful analytical instruments to assess the socio-political implications of EA.     

An assessment of heavy metal contamination in surface sediment using statistical analysis

The distribution and accumulation of heavy metals in the sediments, especially those nearest of wastewater discharges of south of Spain, were investigated. Sediment samples from 14 locations were collected and characterised for metal content (e.g. Ni, Cu, Zn, Cr, Pb, Mn, Cd and Hg), organic carbon, total nitrogen, total phosphorous, n-hexane-extractable material, carbonates and grain size. Concentration data were processed using correlation analysis and factor analysis. The correlation analysis of concentrations data showed important positive correlations among organic carbon, total phosphorus, Cu, Zn, Cd and Hg, otherwise weak correlations among Mn, Cr, Ni and CO₃ ^2???, indicating that these metals have complicated geochemical behaviours. The use of statistical factor analysis also confirmed these results. Sediments pollution assessment was carried out using geoaccumulation and metal pollution indexes (MPI₈). The results revealed that sediments of Cádiz bay and Sancti Petri channel were uncontaminated with the studied metals.     

Comparing the natural variation of oribatid mite communities with their changes associated with anthropogenic disturbance

Several organism communities serve as ecological and environmental indicators to detect changes in human-impacted habitats. However, the composition of indicator communities may vary because of natural variation in addition to the changes associated with human disturbances. This meta-analysis compared the natural variation of oribatid mite assemblages, a good indicator model group in soil ecosystems, with their deviations associated with disturbance using diversity and dissimilarity indices and three human disturbance types. Literature data were collected about oribatid mite assemblages from natural and disturbed habitats. Human disturbances consisted of agriculture, heavy metal pollution and forest management. Biodiversity indices (Shannon and Berger-Parker) and dissimilarity indices (Jaccard and Bray-Curtis) were calculated among natural habitats and between disturbed and control habitats at the species and genus level. We considered oribatid mite assemblages as effective community-level indicators when the methods separated the differences of assemblages between disturbed and control habitats from their varieties among natural habitats. In addition, the study analysed the correlation between these indices and environmental variables of the study sites. Oribatid mite assemblages performed high indication strength with Bray-Curtis index for agricultural disturbances since dissimilarity values between disturbed and control habitats were as high as between different natural habitats and higher than among the same types of natural habitats. Genus-level values showed similar results to the species level. This approach may be useful to test the effectiveness of other indicator groups and methods.     

Development of the microbial communities in lake donghu in relation to water quality

There is increasing recognition that protozoa is very useful in monitoring and evaluating water ecological healthy and quality. In order to study the relationship between structure and function of protozoan communities and water qualities, six sampling stations were set on Lake Donghu, a hypereutrophic subtropical Chinese lake. Microbial communities and protists sampling from the six stations was conducted by PFU (Polyurethane foam unit) method. Species number (S), diversity index (DI), percentage of phytomastigophra, community pollution value (CPV), community similarity and heterophy index (HI) were mensurated. The measured indicators of water quality included total phosphorus (TP), dissolved oxygen (DO), Chemical oxygen demand (COD), NH(4)(+), NO(2)(-) and NO(3)(-). Every month water samples from stations I, II, III, IV were chemically analyzed for a whole year, Among the chemically analyzed stations, station I was the most heavily polluted, station II was the next, stations III and IV had similar pollution degrees. The variable tendencies of COD, TP, NH(3), NO(2)(-), NO(3)(-), and DO during the year was approximately coincident among the six stations. Analysis from the community parameters showed that the pollution of station 0 was much more serious than others, and station V was the most slight. Of the community parameters, CPV and HI were sensitive in reflecting the variables of the water quality. Community similarity index was also sensitive in dividing water qualities and the water quality status of different stations could be correctly classified by the cluster analysis. DI could reflect the tendency of water quality gradient, species number and percentage of Phytomastigophora was not obvious in indicating the water quality gradient.     

An assessment of selected trace elements in intertidal surface sediments collected from the Peninsular Malaysia

Concentrations of 11 trace elements (V, Cr, Co, Ni, Cu, Zn, As, Ag, Cd, Pb, and U) were determined in the intertidal surface sediments of Peninsular Malaysia. The average trace element concentrations are ranked as follows: Zn>V>As>Cr>Pb>Cu>Ni>Co>U>g>Cd. Interim Sediment Quality Guidelines (ISQGs) employed in present study are the Australia and New Zealand joint guideline (ANZECC/ARMCANZ), and the Hong Kong authorities. From the pooled data, none of these trace elements have the average concentration above the ISQG-high values. However, As and Ag average concentrations were over the ISQG-low values. Some elements were found to have the average concentration above the ISQG-high and/or ISQG-low in certain locations, including Kampung Pasir Putih (JPP), Lumut Port (ALP), Kuala Perai (PKP), Port Dickson (NPD), and others. The lowest and highest concentrations in a specific sampling location and maritime area varied among the elements, variations that were greatly affected by natural and anthropogenic activities in a given area. For each trace element, there were various levels of concentration among the sampling locations and maritime areas. These patterns indicated pollutant sources of an element for each area perhaps derived from nearby areas and did not widely distributed to other locations. It is necessary for Malaysia to develop an ISQG for effective quick screening and evaluation of the coastal environment of Peninsular Malaysia.     

Risk assessment and remediation suggestion of impacted soil by produced water associated with oil production

Produced water is water trapped in underground formations that is brought to the surface along with oil or gas production. Oilfield impacted soil is the most common environmental problem associated with oil production. The produced water associated with oil-production contaminates the soil and causes the outright death of plants, and the subsequent erosion of topsoil. Also, impacted soil serves to contaminate surface waters and shallow aquifers. This paper is intended to provide an approach for full characterization of contaminated soil by produced water, by means of analysis of both the produced water and the impacted soil using several recommended analytical techniques and then identify and assay the main constituents that cause contamination of the soil. Gialo-59 oilfield (29N, 21E), Libya, has been chosen as the case study of this work. The field has a long history of petroleum production since 1959, where about 300,000 bbl of produced water be discharged into open pit. Test samples of contaminated soil were collected from one of the disposal pits. Samples of produced water were collected from different points throughout the oil production process, and the analyses were carried out at the labs of Libyan Petroleum Institute, Tripoli, Libya. The results are compared with the local environmental limiting constituents in order to prepare for a plan of soil remediation. The results showed that the main constituents (pollutants) that impact the soil are salts and hydrocarbon compounds. Accordingly; an action of soil remediation has been proposed to remove the salts and degradation of hydrocarbons.     

An assessment of metal pollution in surface sediments of Seyhan dam by using enrichment factor, geoaccumulation index and statistical analyses

The aim of this study was to determine if high concentrations of any heavy metals exist in the sediment of Seyhan Dam reservoir to be considered toxic to the aquatic environment. Surface sediment samples from five stations in the Seyhan dam were collected quarterly from 2004 to 2005 and examined for metal content (Cr, Zn Cu, Mn, Cd, Fe, Ca, K, and Na), organic matter, and grain size. Correlation analyses showed that metal content of Seyhan dam sediment was affected by organic matter and grain size. The results have been compared with values given in the literature. The evaluation of the metal pollution status of the dam was carried out by using the enrichment factor and the geoaccumulation index. A comparison with sediment quality guideline values has also been made. Based on the enrichment factor, dam sediments were treated as a moderately severe enrichment with Cd and minor enrichment with Cr and Mn. The results of geoaccumulation index reveal that sediments of Seyhan Dam were strongly polluted in stations 1, 2, 4, and 5, and were moderately polluted in station 3 with Cd. Moreover, Cd and Cr concentrations in the sediments were above TECs except ERL for Cd.     

Health risk assessment of mercury and arsenic associated with consumption of fish from the Persian Gulf

Concentrations of mercury and arsenic in fish from the Persian Gulf were determined by graphite furnace atomic absorption spectrometry. Concentrations of the metals in muscle samples were 0.049–0.402 μg g^?1 for mercury and 0.168–0.479 μg g^?1 for arsenic, with means of 0.133 and 0.312 μg g^?1, respectively. The maximum daily consumption rate (grams per day) and meal consumption limit (meals per month) was calculated to estimate health risks associated with fish consumption. According to the results, the maximum allowable consumption rate varies between 8–56 and 15–96 g/day base on mercury and arsenic content, respectively. The results of this study indicate that the concentration of mercury and arsenic is well below the maximum permissible levels for mercury (0.5 μg g^?1) and arsenic (6 μg g^?1) according to international standards.     

An integrated assessment model for cross-country pipelines

The cross-country petroleum pipelines are environmentally sensitive because they traverse through varied terrain covering crop fields, forests, rivers, populated areas, desert, hills and offshore. Any malfunction of these pipelines may cause devastating effect on the environment. Hence, the pipeline operators plan and design pipelines projects with sufficient consideration of environment and social aspects along with the technological alternatives. Traditionally, in project appraisal, optimum technical alternative is selected using financial analysis. Impact assessments (IA) are then carried out to justify the selection and subsequent statutory approval. However, the IAs often suggest alternative sites and/or alternate technology and implementation methodology, resulting in revision of entire technical and financial analysis. This study addresses the above issues by developing an integrated framework for project feasibility analysis with the application of analytic hierarchy process (AHP), a multiple attribute decision-making technique. The model considers technical analysis (TA), socioeconomic IA (SEIA) and environmental IA (EIA) in an integrated framework to select the best project from a few alternative feasible projects. Subsequent financial analysis then justifies the selection. The entire methodology has been explained here through a case application on cross-country petroleum pipeline project in India.     

An assessment of air quality in Karachi,Pakistan

An atmospheric pollution survey was carried out at 13 sites in Karachi, Pakistan, simultaneously from 0600 h to 2100 h for 15 consecutive days in May 1990 which also included meteorological measurements. The monitoring sites were included along the prevailing wind patterns in Karachi. Carbon monoxide levels in the ambient air were found to reach 9–10 ppm along the busy urban streets whereas CO₂ level exceeded 370 ppm in these areas. Our survey indicates that NO₂ levels were exceeding U.S. ambient air quality standards. Maxmum NO₂ concentrations were observed (0.3–0.5 ppm) during the daytime from 0600 h to 2100 h. The surface ozone maximum around noon at the inland sites reached the levels of 40 ppb and 50 ppb respectively compared to upwind coastal Sites 1 level of 25 ppb. The Pb concentrations were approximately 3- to 7-fold higher than average, which corresponded well to urban air. Fossil fuel SO₄ (excess) and NO₃ were apportionally based on the assumption that these two anions were present as (NH₄)₂SO₄, and NH₄NO₃ in the aerosols. In the eastern part of the city atmospheric sulphate (SO₄) shows the combustion of coal as its source from the vicinity and downwind of a steel manufacturing plant.     

Combining policy instruments for sustainable energy systems: An assessment with the GMM model

An assessment of the impact of an illustrative portfolio of policy instruments that address different sustainability concerns in the global energy system in areas of climate change, air pollution and introduction of renewable-energy resources is conducted. The effects of a policy set containing three instruments, implemented either individually or in combination, were examined. The policy instruments under examination in this work include: Cap-and-Trade policies imposing a CO₂ emission reduction target on the global energy system, a renewable portfolio standard that forces a minimum share of renewable electricity generation, and the internalisation of external costs of power generation associated with local pollution. Implementation of these policy instruments significantly changes the structure and environmental performance of the energy sector, and particularly the structure of the electric-generation sector. The positive effects are amplified when the policy instruments are simultaneously applied, illustrating the potential for synergies between these energy-policy domains. The analysis has been conducted with the multi-regional, energy-system Global MARKAL Model (GMM), a “bottom-up” partial-equilibrium model that provides a detailed representation of energy technologies and endogenizes technology learning. ^★A preliminary version of this paper has been presented at the 6th IAEE European Energy Conference on “Modelling in Energy Economics and Policy”, 1–3 September 2004, ETH Zürich, Switzerland.     

Trace metals in soil and vegetables and associated health risk assessment

The objective of this study was to assess the contamination level of trace metals in soil and vegetables and health risk to the urban population in Bangladesh. The range of Cr, Ni, Cu, As, Cd, and Pb in agricultural soils was 158–1160, 104–443, 157–519, 41–93, 3.9–13, and 84–574 mg/kg, respectively. Sequential extraction tests revealed that the studied metals were predominantly associated with the residual fraction, followed by the organically bound phase. Concerning Cu, Ni, Cd, and Pb in vegetables, more than 50 % samples exceeded the FAO/WHO recommended permissible limits. Considering the transfer of metals from soil to vegetables, Cu and Cd exhibited higher transfer factor (TF) values than the other metals. Target hazard quotient (THQ) for individual metal was below 1, suggesting that people would not experience significant health hazards if they ingest a single metal from vegetables. However, total metal THQ signifies the potential non-carcinogenic health hazard to the highly exposed consumers. The carcinogenic risk (TR) of As (1.9?×?10^?4) and Pb (2.3?×?10^?5) through consumption of vegetables were higher than the USEPA threshold level (10^?6), indicating potential cancer risks.     

Mass, surface area and number metrics in diesel occupational exposure assessment

While diesel aerosol exposure assessment has traditionally been based on the mass concentration metric, recent studies have suggested that particle number and surface area concentrations may be more health-relevant. In this study, we evaluated the exposures of three occupational groups-bus drivers, parking garage attendants, and bus mechanics-using the mass concentration of elemental carbon (EC) as well as surface area and number concentrations. These occupational groups are exposed to mixtures of diesel and gasoline exhaust on a regular basis in various ratios. The three groups had significantly different exposures to workshift TWA EC with the highest levels observed in the bus garage mechanics and the lowest levels in the parking ramp booth attendants. In terms of surface area, parking ramp attendants had significantly greater exposures than bus garage mechanics, who in turn had significantly greater exposures than bus drivers. In terms of number concentrations, the exposures of garage mechanics exceeded those of ramp booth attendants by a factor of 5-6. Depending on the exposure metric chosen, the three occupational groups had quite different exposure rankings. This illustrates the importance of the choice of exposure metric in epidemiological studies. If these three occupational groups were part of an epidemiological study, depending on the metric used, they may or may not be part of the same similarly exposed group (SEG). The exposure rankings (e.g., low, medium, or high) of the three groups also changes with the metric used. If the incorrect metric is used, significant misclassification errors may occur.     

Impact of salinity and pH on phytoplankton communities in a tropical freshwater system: An investigation with pigment analysis by HPLC

An in vitro study was carried out to understand the effects of salinity shock and variation in pH on phytoplankton communities in a tropical freshwater system of the Godavari River (a major peninsular river in India). The distributions of, and variations in, phytoplankton communities were assessed by quantitative determination of their class specific marker pigments, using HPLC. Subtle changes in salinity of the freshwater by one practical salinity unit (PSU) completely removed green algae from the system and allowed the cyanobacteria to come into dominance. The cyanobacteria were found to tolerate higher osmotic stress until the salinity reached a PSU of 16. The higher salinity tolerance range of the cyanobacteria was attributed to the enhanced synthesis of zeaxanthin as protective xanthophylls against the osmotic stress. However, the effects of changing pH were not as dramatic as salinity where the green algae and the cyanobacteria from the same freshwater system showed a considerable acclimation towards the fluctuating pH. These findings are environmentally relevant to understand the likely impact of salt water intrusion and pH variation on phytoplankton communities in a tropical freshwater system.     

Health risk assessment of occupational exposure to particulate-phase polycyclic aromatic hydrocarbons associated with Chinese, Malay and Indian cooking

Food cooking using liquefied petroleum gas (LPG) has received considerable attention in recent years since it is an important source of particulate air pollution in indoor environments for non-smokers. Exposure to organic compounds such as polycyclic aromatic hydrocarbons (PAHs) contained in particles is of particular health concern since some of these compounds are suspected carcinogens. It is therefore necessary to chemically characterize the airborne particles emitted from gas cooking to assess their possible health impacts. In this work, the levels of fine particulate matter (PM(2.5)) and 16 priority PAHs were determined in three different ethnic commercial kitchens, specifically Chinese, Malay and Indian food stalls, where distinctive cooking methods were employed. The mass concentrations of PM(2.5) and PAHs, and the fraction of PAHs in PM(2.5) were the highest at the Malay stall (245.3 microg m(-3), 609.0 ng m(-3), and 0.25%, respectively), followed by the Chinese stall (201.6 microg m(-3), 141.0 ng m(-3), and 0.07%), and the Indian stall (186.9 microg m(-3), 37.9 ng m(-3), and 0.02%). This difference in the levels of particulate pollution among the three stalls may be attributed to the different cooking methods employed at the food stalls, the amount of food cooked, and the cooking time, although the most sensitive parameter appears to be the predominant cooking method used. Frying processes, especially deep-frying, produce more air pollutants, possibly due to the high oil temperatures used in such operations. Furthermore, it is found that frying, be it deep-frying at the Malay stall or stir-frying at the Chinese stall, gave rise to an abundance of higher molecular weight PAHs such as benzo[b]fluoranthene, indeno[1,2,3-cd]pyrene and benzo[g,h,i]perylene whereas low-temperature cooking, such as simmering at the Indian stall, has a higher concentration of lower molecular weight PAHs. In addition, the correlation matrices and diagnostic ratios of PAHs were calculated to determine the markers of gas cooking. To evaluate the potential health threat due to inhalation exposure from the indoor particulate pollution, excess lifetime cancer risk (ELCR) was also calculated for an exposed individual. The findings suggest that cooking fumes in the three commercial kitchens pose adverse health effects.