Growth, yield and photosynthesis of Panicum maximum and Stylosanthes hamata under elevated CO2

Plant height, biomass production, assimilatory functions and chlorophyll accumulation of Panicum maximum and Stylosanthes hamata in intercropping systems was influenced significantly under elevated CO2 (600 +/- 50 ppm) in open top chambers (OTCs). The plant height increased by 32.0 and 49.0% over the control in P. maximum and S. hamata respectively in intercropping system under elevated CO2 over open field grown crops (Ca). P. maximum and S. hamata produced 67 and 85% higher fresh and dry biomass respectively under elevated CO2. Rates of photosynthesis and stomatal conductance increased in both the crop species in intercropping systems under elevated CO2. The canopy photosynthesis (photosynthesis x leaf area index) of these crop species increased significantly under elevated CO2 over the open grown crops. The chlorophyll a and b accumulation were also higher in the leaves of both the crop species as grown in OTC with elevated CO2. The increased chlorophyll content, leaf area index and canopy photosynthesis led to higher growth and biomass production in these crop species under elevated CO2. The total carbon sequestration in crop biomass and soils during the three years was 21.53 Mg C/ha under elevated CO2. The data revealed that P. maximum and S. hamata intercropping system is the potential as a sink for the increasing level of CO2 in the atmosphere in the semi-arid tropics.     

不同生境下报春苣苔的光合作用日变化特性

国家一级濒危植物报春苣苔Primulina tabacum Hance是苦苣苔科多年生草本植物。研究不同生境下报春苣苔在干湿季的光合作用日变化动态及其对环境因子响应,结果表明：旷地午间时段,光合有效辐射（PAR）增加伴随着空气湿度（RH）的显著下降,此时报春苣苔的净光合速率（Pn）因受光抑制和气孔限制的影响而下降。岩洞生境下报春苣苔的Pn没有受到抑制,但其Pn和光合碳水化合物（CH2O）生成速率较低,洞内光照缺乏是限制其光合碳同化的原因之一。3个样地检测的Pn、CH2O产生速率、气孔导度（Gs）、蒸腾速率（Tr）以及Rubisco的Vo/Vc比率等在湿季均优于干季。主成分分析表明叶片Narea与Chl含量、比叶重（LMA）以及气孔密度对光合作用具有显著影响。Pearson相关分析表明不同生境下影响报春苣苔Pn的关键生态因子有所不同,旷地强光环境下过高的叶片水蒸气压亏缺（VPD）和气温（ta）直接限制净光合速率的水平,而在岩洞弱光高湿环境中,PAR则成为Pn的限制因子。同一环境因子在不同生境下对报春苣苔Pn的影响也有所不同：在旷地强光生境下,空气湿度（RH）的适度增加有利于降低过高的VPD,促进气孔开放而提高Pn。而在岩洞低光条件下,过高RH则会使降低VPD而不利于叶片的气体交换,使光合作用受影响。这个结果启示,在进行报春苣苔野外回归栽培时,应该注意PAR和RH等环境因子的控制。     

Are savannas patch-dynamic systems? A landscape model

Savannas are ecosystems characterized by the coexistence of woody species (trees and bushes) and grasses. Given that savanna characteristics are mainly formed from competition, herbivory, fire, woodcutting, and patchy soil and precipitation characteristics, we propose a spatially explicit model to examine the effects of the above-mentioned parameters on savanna vegetation dynamics in space and time. Furthermore, we investigate the effects of the above-mentioned parameters on tree–bush–grass ratios, as well as the degrees of aggregation of tree–bush–grass biomass. We parameterized our model for an arid savanna with shallow soil depth as well as a mesic one with generally deeper and more variable soil depths. Our model was able to reproduce savanna vegetation characteristics for periods of time over 2000 years with daily updated time steps. According to our results, tree biomass was higher than bush biomass in the arid savanna but bush biomass exceeded tree and grass biomass in the simulated mesic savanna. Woody biomass increased in our simulations when the soil's porosity values were increased (mesic savanna), in combination with higher precipitation. Savanna vegetation varied from open savanna to woodland and back to open savanna again. Vegetation cycles varied over ∼300-year cycles in the arid and ∼220-year cycles in the mesic-simulated savanna. Autocorrelation values indicated that there are both temporal and spatial vegetation cycles. Our model indicated cycling savanna vegetation at the landscape scale, cycles in cells, and patchiness, i.e. patch dynamics.     

Carbon sequestration potential of Rhizophora mucronata and Avicennia marina as influenced by age, season, growth and sediment characteristics in southeast coast of India

This work analysed the carbon sequestration potential in two species of mangroves (Rhizophora mucronata and Avicennia marina) along with their growth, biomass, sediment characteristics for four seasons of the year 2009–2010, in planted stands of different age (1–17.5 years) in the Vellar-Coleroon estuarine complex, India. The mangroves were recorded to store significant amount of biomass. Avicennia marina performed better to display 75 % higher rate of carbon sequestration than that in Rhizophora mucronata. This could be attributed to growth efficiency and high biomass production. For instance, Avicennia marina exhibited 2.7 fold higher girth, 24 % higher net canopy photosynthesis, 2 fold aboveground biomass (AGB), 40 % more belowground biomass (BGB) and 77.3 % higher total biomass, than R. mucronata did. Seasonally the rate of carbon sequestration was 7.3 fold higher in post-monsoon, 3.4 fold in monsoon, 73 % more in summer than that in pre-monsoon. The rate of carbon sequestration was positively correlated with age of planted site, tree height, tree diameter, net canopy photosynthesis, AGB, BGB, total biomass, carbon stock, growth efficiency, AGB/tree height tree girth, leaf area index, silt content (p?<?0.01). The carbon sequestration was negatively corrected with soil temperature and clay content (p?<?0.05). Mangroves were found to be a productive system and important sink of carbon in the tropical coastal zone, but increasing soil temperature due to global warming would have a negative impact on carbon sequestration potential of the mangroves.     

3 forest simulation model

The 3 forest simulation model is a process model of tree growth, carbon and nitrogen dynamics in a single-species, even-aged forest stand. It is based on the model. Major changes include the computation of sun angle and radiation as a function of latitude and day of the year, the closed-form integration of canopy production as a function of day and hour, the introduction of tree number, height, and diameter as separate state variables, and different growth strategies, mortalities, and resulting self-thinning as function of crowding competition.The tree/soil system is described by a set of nonlinear ordinary differential equations for the state variables: tree number, base diameter, tree height, wood biomass, nitrogen in wood, leaf mass, fine root mass, fruit biomass, assimilate, carbon and nitrogen in litter, carbon and nitrogen in soil organic matter, and plant-available nitrogen. The model includes explicit formulations of all relevant ecophysiological processes such as: computation of radiation as a function of seasonal time, daytime and cloudiness, light attenuation in the canopy, and canopy photosynthesis as function of latitude, seasonal time, and daytime, respiration of all parts, assimilate allocation, increment formation, nitrogen fixation, mineralization, humification and leaching, forest management (thinning, felling, litter removal, fertilization etc.), temperature effects on respiration and decomposition, and environmental effects (pollution damage to photosynthesis, leaves, and fine roots). Only ecophysiological parameters which can be either directly measured or estimated with reasonable certainty are used. 3 is a generic process model which requires species- and site-specific parametrization. It can be applied to deciduous and coniferous forests under tropical, as well as temperate or boreal conditions.The paper presents a full documentation of the mathematical model as well as representative simulation results for spruce and acacia.     

treedyn3 forest simulation model

The treedyn3 forest simulation model is a process model of tree growth, carbon and nitrogen dynamics in a single-species, even-aged forest stand. It is based on the treedyn model. Major changes include the computation of sun angle and radiation as a function of latitude and day of the year, the closed-form integration of canopy production as a function of day and hour, the introduction of tree number, height, and diameter as separate state variables, and different growth strategies, mortalities, and resulting self-thinning as function of crowding competition.The tree/soil system is described by a set of nonlinear ordinary differential equations for the state variables: tree number, base diameter, tree height, wood biomass, nitrogen in wood, leaf mass, fine root mass, fruit biomass, assimilate, carbon and nitrogen in litter, carbon and nitrogen in soil organic matter, and plant-available nitrogen. The model includes explicit formulations of all relevant ecophysiological processes such as: computation of radiation as a function of seasonal time, daytime and cloudiness, light attenuation in the canopy, and canopy photosynthesis as function of latitude, seasonal time, and daytime, respiration of all parts, assimilate allocation, increment formation, nitrogen fixation, mineralization, humification and leaching, forest management (thinning, felling, litter removal, fertilization etc.), temperature effects on respiration and decomposition, and environmental effects (pollution damage to photosynthesis, leaves, and fine roots). Only ecophysiological parameters which can be either directly measured or estimated with reasonable certainty are used. treedyn3 is a generic process model which requires species- and site-specific parametrization. It can be applied to deciduous and coniferous forests under tropical, as well as temperate or boreal conditions.The paper presents a full documentation of the mathematical model as well as representative simulation results for spruce and acacia.     

Canopy structure versus physiology effects on net photosynthesis of mountain grasslands differing in land use

The present paper aims at investigating how changes in canopy structure and species physiology associated with the abandonment of mountain meadows and pastures affect their net photosynthesis. For this purpose, a multi-layer vegetation–atmosphere transfer (VAT) model is employed, which explicitly takes into account the structural and functional properties of the various canopy components and species. Three sites differing in land use are investigated, a meadow, a pasture and an abandoned area. Model simulations agree reasonably with measured canopy net photosynthetic rates, the meadow featuring the highest daily net photosynthesis, followed by the pasture and, finally, the abandoned area. A detailed process analysis suggests this ranking to be mainly due to bulk canopy physiology, which decreases from the meadow to the pasture and the abandoned area, reflecting species composition and species-specific photosynthetic capacities. Differences between the canopies with regard to canopy structure are found to be of minor importance. The amounts of green, photosynthetically active plant matter are too similar at the three sites to be a major source of variation in net photosynthesis. Large differences exist between the canopies with regard to the amount of photosynthetically inactive phytoelements. Even though a model analysis showed them to be potentially important, most of them are accumulated close to the ground surface, where they exert little influence on canopy net photosynthesis.     

橡胶林在间种砂仁与咖啡的模式下土壤微生物生物量

探讨了橡胶与砂仁、橡胶与咖啡间种和纯橡胶林3种栽培模式下的土壤微生物生物量及其与土壤有机碳和土壤微生物呼吸强度的关系。结果表明,在这3种模式下,土壤微生物生物量平均值由高到低的顺序为:橡胶 砂仁林地>纯橡胶林>橡胶 咖啡林地。其Cmic范围是380.8~568.3 mg/kg。橡胶 咖啡林地土壤微生物生物量在旱季高于雨季,而其余两种林地则在雨季较高。橡胶林间种作物后,林地土壤表现出比纯橡胶林地有较高的土壤微生物生物量和较短的土壤微生物的转化周期,年转化代数较多;同时,间种也大大改善了林内生态环境。     

Water use efficiency of a mixed cropping system of corn with grasses

A new cropping system of corn mixed with grasses was tried to make full and efficient use of water and to ease environmental problems such as soil erosion by water and wind in grain and forage feed production practices. Field experiments were conducted to investigate the water use efficiency under this mixture cropping system. Six treatments with two replicates were arranged as: bare field, corn only, rye only, alfalfa only, rye–corn mixture and alfalfa–corn mixture. Lysimeters were used to measure different components of water consumption in the crop fields for water use efficiency estimation. From the yields and water consumption of crops under different treatments, combined water use efficiency of corn and grasses were estimated. The results showed that WUEs in the mixed cropping fields of corn–grasses were much higher than those in the fields where only corn or grass were grown. Averaged WUE was 3.71 kg/m³ from the corn and rye mixture fields, 30% higher than that from the plots where only corn or rye were grown. Averaged WUE was 4.55 kg/m³ from the alfalfa and corn mixture fields, 60% higher than that from the fields where only corn or alfalfa were grown. Under the same conditions of irrigation, yields from the rye and corn mixture plots increased by 33%, as compared with those from fields where only corn or rye were grown. The yields from alfalfa and corn mixture fields were 61% higher than those from fields where only corn or alfalfa were grown. The experimental results also indicated that corn and alfalfa mixture cropping is better than a corn–rye mixture system.     

Effects of Long-Term Ungulate Exclusion and Recent Alien Species Control on the Preservation and Restoration of a Hawaiian Tropical Dry Forest

Abstract: Although the destruction of tropical rain forests receives much attention, tropical dry forests are in general far more threatened and endangered. Eliminating grazing ungulates is often considered a key first step toward protecting these ecosystems, but few studies have investigated the long-term effects of this technique. We examined the effects of ungulate exclusion from a 2.3-ha native dry-forest preserve on the island of Hawaii by comparing its present flora to the flora of an adjacent area subjected to continuous grazing since the preserve was fenced over 40 years ago. Relative to this adjacent area, the fenced preserve contained a more diverse flora with substantially greater coverage of native overstory and understory species. Until recently, however, regeneration of native canopy trees within the preserve appears to have been thwarted by a dominant herbaceous cover of alien fountain grass (   Pennisetum setaceum ) and predation by alien rodent species. Our results indicate that although ungulate exclusion may be a necessary and critical first step, it is not sufficient to adequately preserve and maintain Hawaii's remaining tropical dry forest remnants. Our recent efforts to control the dominant alien species within the fenced preserve suggest that this practice may facilitate both the regeneration of native species and the colonization and potential invasion of new alien plants. Comparisons of seedlings of the dominant native canopy tree Diospyros sandwicensis growing in sites both dominated by and free of fountain grass suggested that fountain grass inhibits Diospyros seedling growth and photosynthesis but may increase survival if seedlings are protected from ungulates.     

Nitrogen availability in relation to vegetation changes resulting from grass encroachment in Dutch dry dunes

The encroachment of some tall grass species in open dune vegetation, as observed in a Dutch dry dune area, is considered unfavourable from a conservation viewpoint. This paper investigates differences in vegetation and soil properties between grass-dominated and still existing open dune grassland plots at four locations along the coast. Soil properties studied include nitrogen and phosphorus pools and nitrogen availability by mineralization. Vegetation properties included are above and below-ground biomass and nitrogen and phosphorus concentrations in above-ground biomass. Systematic differences in N-pools between grass-dominated and open dune grassland plots were not observed. However, N-availability by mineralization and its turnover rates are higher in grass-dominated plots than in open dune grassland plots, as well as above and below-ground biomass. In open dune grassland plots, atmospheric N-input is an important source of N, whereas in grass-dominated plots mineralization largely exceeds atmospheric N-input. However, these observations do not explain the mosaic-like vegetation pattern. Grazing intensity is most likely the determinant factor in the dry dune system. It is concluded, that grass encroachment is probably triggered by atmospheric deposition and is enhanced by positive feedbacks in the N-cycle. The relevance of these results for restoration management is briefly discussed.     

Soil feedback of exotic savanna grass relates to pathogen absence and mycorrhizal selectivity

Enemy release of exotic plants from soil pathogens has been tested by examining plant-soil feedback effects in repetitive growth cycles. However, positive soil feedback may also be due to enhanced benefit from the local arbuscular mycorrhizal fungi (AMF). Few studies actually have tested pathogen effects, and none of them did so in arid savannas. In the Kalahari savanna in Botswana, we compared the soil feedback of the exotic grass Cenchrus biflorus with that of two dominant native grasses, Eragrostis lehmanniana and Aristida meridionalis. The exotic grass had neutral to positive soil feedback, whereas both native grasses showed neutral to negative feedback effects. Isolation and testing of root-inhabiting fungi of E. lehmanniana yielded two host-specific pathogens that did not influence the exotic C. biflorus or the other native grass, A. meridionalis. None of the grasses was affected by the fungi that were isolated from the roots of the exotic C. biflorus. We isolated and compared the AMF community of the native and exotic grasses by polymerase chain reaction-denaturing gradient gel elecrophoresis (PCR-DGGE), targeting AMF 18S rRNA. We used roots from monospecific field stands and from plants grown in pots with mixtures of soils from the monospecific field stands. Three-quarters of the root samples of the exotic grass had two nearly identical sequences, showing 99% similarity with Glomus versiforme. The two native grasses were also associated with distinct bands, but each of these bands occurred in only a fraction of the root samples. The native grasses contained a higher diversity of AMF bands than the exotic grass. Canonical correspondence analyses of the AMF band patterns revealed almost as much difference between the native and exotic grasses as between the native grasses. In conclusion, our results support the hypothesis that release from soil-borne enemies may facilitate local abundance of exotic plants, and we provide the first evidence that these processes may occur in arid savanna ecosystems. Pathogenicity tests implicated the involvement of soil pathogens in the soil feedback responses, and further studies should reveal the functional consequences of the observed high infection with a low diversity of AMF in the roots of exotic plants.     

Plant winners and losers during grassland N-eutrophication differ in biomass allocation and mycorrhizas

Human activities release tremendous amounts of nitrogenous compounds into the atmosphere. Wet and dry deposition distributes this airborne nitrogen (N) on otherwise pristine ecosystems. This eutrophication process significantly alters the species composition of native grasslands; generally a few nitrophilic plant species become dominant while many other species disappear. The functional equilibrium model predicts that, compared to species that decline in response to N enrichment, nitrophilic grass species should respond to N enrichment with greater biomass allocation aboveground and reduced allocation to roots and mycorrhizas. The mycorrhizal feedback hypothesis states that the composition of mycorrhizal fungal communities may influence the composition of plant communities, and it predicts that N enrichment may generate reciprocal shifts in the species composition of mycorrhizal fungi and plants. We tested these hypotheses with experiments that compared biomass allocation and mycorrhizal function of four grass ecotypes (three species), two that gained and two that lost biomass and cover in response to long-term N enrichment experiments at Cedar Creek and Konza Long-Term Ecological Research grasslands. Local grass ecotypes were grown in soil from their respective sites and inoculated with whole-soil inoculum collected from either fertilized (FERT) or unfertilized (UNFERT) plots. Our results strongly support the functional equilibrium model. In both grassland systems the nitrophilic grass species grew taller, allocated more biomass to shoots than to roots, and formed fewer mycorrhizas compared to the grass species that it replaced. Our results did not fully support the hypothesis that N-induced changes in the mycorrhizal fungal community were drivers of the plant community shifts that accompany N eutrophication. The FERT and UNFERT soil inoculum influenced the growth of the grasses differently, but this varied with site and grass ecotype in both expected and unexpected ways suggesting that ambient soil fertility or other factors may be interacting with mycorrhizal feedbacks.     

Invasion through quantitative effects: intense shade drives native decline and invasive success.

The effects of invasive nonnative species on community composition are well documented. However, few studies have determined the mechanisms by which invaders drive these changes. The literature indicates that many nonnative plant species alter light availability differently than natives in a given community, suggesting that shading may be such a mechanism. We compared light quantity (photosynthetically active radiation, PAR) and quality (red: far-red ratio, R:Fr) in riparian reaches heavily invaded by a nonnative tree (Acer platanoides) to that in an uninvaded forest and experimentally tested the effects of our measured differences in PAR and R:Fr on the survival, growth, and biomass allocation of seedlings of the dominant native species and Acer platanoides. Light conditions representative of the understory of Acer platanoides-invaded forest decreased survival of the native maple Acer glabrum by 28%; Amelanchier alnifolia by 32%; Betula occidentalis by 55%; Elymus glaucus by 46%; and Sorbus aucuparia by 52%, relative to seedlings growing in PAR similar to that of native understories. In contrast, Acer platanoides and the native shrub Symphoricarpos albus were not affected by reductions in PAR. Acer platanoides seedlings and saplings are uniquely adapted to shade relative to native species. Acer platanoides was the only species tested that decreased allocation to roots relative to shoots in the invaded forest vs. the native forest light conditions. Therefore it was the only species to demonstrate an adaptive response to the particular light environment associated with Acer platanoides invasion as predicted by optimal partitioning theory. The profound change in light quantity associated with Acer platanoides canopies appears to act as an important driver of native suppression and conspecific success in invaded riparian communities. Further research is necessary to determine whether the effect of nonnative plant-driven changes on light quantity and quality is a widespread mechanism negatively affecting resident species and facilitating invasion by nonnatives.     

Photosynthetic characteristics of giant kelp (Macrocystis pyrifera) determined in situ

Rates of net photosynthesis and nocturnal respiration by individual blades of the giant kelp Macrocystis pyrifera (L.) C. Agardh in southern California, were determined in situ by measuring oxygen production in polyethylene bags during spring/summer of 1983. Mature blades from different depths in the water column exhibited different photosynthetic characteristics. Blades from the surface canopy (0 to 1 m depth) exhibited higher photosynthetic capacity under saturating irradiance and higher photosynthetic efficiency at low irradiances than blades from 3 to 5 or 7 to 9 m depths. Saturating irradiance was lower for canopy blades than for deeper blades. Canopy blades showed no short-term photoinhibition, but photosynthetic rates of deeper blades were significantly reduced during 1 to 2 h incubations at high irradiances. Results of 1 to 2 wk acclimation experiments indicated that differences between photosynthetic characteristics of blades from different depths were primarily attributable to acclimation light conditions. Vertical displacement of blades within the kelp canopy occurred on a time-scale of 1 min to 1 h. Blades continually moved between the unshaded surface layer and deeper, shaded layers. Vertical movement did not maximize photosynthesis by individual blades; only a small proportion of blades making up a dense surface canopy maintained light-saturated photosynthetic rates during midday incubations. The relatively high photosynthetic rates exhibited by canopy blades over the entire range of light conditions probably resulted from acclimation to intermittent high and low irradiances, a consequence of vertical displacement. Vertical displacement also reduced the afternoon depression in photosynthesis of individual canopy blades. The overall effect of vertical displacement was optimization of total net photosynthesis by the kelp canopy and, therefore, optimization of whole-plant production.     

Interrelationships among shrub encroachment, land management, and litter decomposition in a semidesert grassland.

Encroachment of woody plants into grasslands, and subsequent brush management, are among the most prominent changes to occur in arid and semiarid systems over the past century. Despite the resulting widespread changes in landcover, substantial uncertainty about the biogeochemical impacts of woody proliferation and brush management exists. We explored the role of shrub encroachment and brush management on leaf litter decomposition in a semidesert grassland where velvet mesquite (Prosopis velutina) abundance has increased over the past 100 years. This change in physiognomy may affect decomposition directly, through altered litter quality or quantity, and indirectly through altered canopy structure. To assess the direct and indirect impacts of shrubs on decomposition, we quantified changes in mass, nitrogen, and carbon in litterbags deployed under mesquite canopies and in intercanopy zones. Litterbags contained foliage from mesquite and Lehmann lovegrass (Eragrostis lehmanniana), a widespread, nonnative grass in southern Arizona. To explore short- and long-term influences of brush management on the initial stages of decomposition, litterbags were deployed at sites where mesquite canopies were removed three weeks, 45 years, or 70 years prior to study initiation. Mesquite litter decomposed more rapidly than lovegrass, but negative indirect influences of mesquite canopies counteracted positive direct effects. Decomposition was positively correlated with soil infiltration into litterbags, which varied with microsite placement, and was lowest under canopies. Low under-canopy decomposition was ostensibly due to decreased soil movement associated with high under-canopy herbaceous biomass. Decomposition rates where canopies were removed three weeks prior to study initiation were comparable to those beneath intact canopies, suggesting that decomposition was driven by mesquite legacy effects on herbaceous cover-soil movement linkages. Decomposition rates where shrubs were removed 45 and 70 years prior to study initiation were comparable to intercanopy rates, suggesting that legacy effects persist less than 45 years. Accurate decomposition modeling has proved challenging in arid and semiarid systems but is critical to understanding biogeochemical responses to woody encroachment and brush management. Predicting brush-management effects on decomposition will require information on shrub-grass interactions and herbaceous biomass influences on soil movement at decadal timescales. Inclusion of microsite factors controlling soil accumulation on litter would improve the predictive capability of decomposition models.     

Biodiversity Loss in Latin American Coffee Landscapes: Review of the Evidence on Ants,Birds, and Trees

Abstract: Studies have documented biodiversity losses due to intensification of coffee management (reduction in canopy richness and complexity). Nevertheless, questions remain regarding relative sensitivity of different taxa, habitat specialists, and functional groups, and whether implications for biodiversity conservation vary across regions. We quantitatively reviewed data from ant, bird, and tree biodiversity studies in coffee agroecosystems to address the following questions: Does species richness decline with intensification or with individual vegetation characteristics? Are there significant losses of species richness in coffee‐management systems compared with forests? Is species loss greater for forest species or for particular functional groups? and Are ants or birds more strongly affected by intensification? Across studies, ant and bird richness declined with management intensification and with changes in vegetation. Species richness of all ants and birds and of forest ant and bird species was lower in most coffee agroecosystems than in forests, but rustic coffee (grown under native forest canopies) had equal or greater ant and bird richness than nearby forests. Sun coffee (grown without canopy trees) sustained the highest species losses, and species loss of forest ant, bird, and tree species increased with management intensity. Losses of ant and bird species were similar, although losses of forest ants were more drastic in rustic coffee. Richness of migratory birds and of birds that forage across vegetation strata was less affected by intensification than richness of resident, canopy, and understory bird species. Rustic farms protected more species than other coffee systems, and loss of species depended greatly on habitat specialization and functional traits. We recommend that forest be protected, rustic coffee be promoted, and intensive coffee farms be restored by augmenting native tree density and richness and allowing growth of epiphytes. We also recommend that future research focus on potential trade‐offs between biodiversity conservation and farmer livelihoods stemming from coffee production.     

Bird Populations in Shade and Sun Coffee Plantations in Central Guatemala

We studied the avifauna of sun and shade coffee plantations and associated mid-elevation habitats during the dry season of 1995. The three plantation types (Inga, Gliricidia, and sun) showed high faunistic similarities with each other and were both distinct and depauperate compared to matorral and forest patch habitats. Of all the coffee plantation habitats, Inga shade had the highest diversity. Species associated with wooded vegetation were more common in shade plantations, particularly in Inga. A second census showed a decline in bird numbers that was more pronounced in sun and Gliricidia than in Inga plantations. Overall, differences between the plantation types were small and all coffee plantations were less diverse than traditional coffee farms previously studied in nearby Chiapas, México. The relatively low bird diversity was probably due to the low stature, low tree species diversity, and heavy pruning of the canopy. These features reflect management practices that are common throughout Latin America. The most common species of birds in all coffee plantation habitats were common second-growth or edge species; more specialized forest species were almost completely absent from plantations. Furthermore, many common matorral species were rare or absent from coffee plantations, even sun plantations with which matorral shares a similar superficial structure. Coffee plantations probably will only be important for avian diversity if a tall, taxonomically and structurally diverse canopy is maintained. We suggest this is most likely to occur on farms that are managed for a variety of products rather than those designated entirely for the production of coffee.     

Identification of species-specific RAPD markers in genus Cenchrus

Cenchrus is an important component of major grass cover of world. Similar to the other major tropical grasses most of the species in genus Cenchrus are also apomictic in nature hence correct and precise identification of accessions and species are problematic and dubious. In the present study 187 decamer oligonucleotide primers were tested for PCR-based DNA amplification of six prominent species of genus Cenchrus. Of these, 32 potential repetitive and polymorphic primers were tested for identification of species-specific markers for C. ciliaris, C. setigerus, C. pennisetiformis, C. prieurri, C. biflorus and C. myosuroides. These primers yielded 51 unique RAPD markers either specific to a species (37) or shared by two or more species (14). Maximum markers were shared between C. ciliaris and C. setigerus confirming theirmore closeness to each other Primers like OPF09, OPF11, OPR15, OPAJ11, OPQ10 and OPAK20 generated strong intense bands can be used on priority in identifying the species from their natural habitat for the development of species-specific core germplasm. Due to apomictic nature this is the prime method of developing cultivars, as morphological characters are largely unable to distinguish them. The level of variation observed clearly suggest RAPD as an appropriate marker for genetic studies and in identifying the lines with species-specific markers for Cenchrus germplasm management activity and also maintaining identity and purity for proprietary reasons.     

The monopolization of understorey habitat by subtidal encrusting coralline algae: a test of the combined effects of canopy-mediated light and sedimentation

Encrusting-coralline-algae habitat monopolized the substrata (>74% cover) under canopies of Ecklonia radiata at four sites (~1 km apart) within each of four localities (>100 km apart) spanning >1000 km of continuous South Australian coastline. This monopolization was analyzed experimentally to test whether canopy-mediated shade and sedimentation account for this canopy–understorey association. I tested the hypothesis that initially different habitat types (turf-forming-algae habitat versus habitat dominated by encrusting coralline algae) will converge to become like those under E. radiata if subjected to lower light and accumulation of sediment in the absence of E. radiata. Convergence in the absence of canopies, but in physically similar environments as under canopies, provides strong evidence that understorey habitats are primarily dependent on the manipulated environments. The experiment was provided with sufficient time (338 days) to adequately test for convergence as evidenced by indistinguishable percentage covers of encrusting coralline algae between canopies and treatments of shade on previously unoccupied rock and between habitat types transplanted to canopies. Convergence of habitat types, however, did not occur under treatments of shade and sedimentation. The effect of lowering light accounted for ~52% of the effect of canopies on percentage cover of encrusting-coralline-algae habitat. The effect of reducing sediment accumulation under shade was negligible. The magnitude of unaccounted effects (~48%) highlights a need to assess alternative factors that act to exclude taxa from or include taxa in the understorey assemblage. It is clear that canopies place strong constraints on the presence and abundance of many taxa, but not encrusting-algae habitats which beneficially coexist as understorey. A more complete identification of such positive and negative effects is needed to improve our understanding of the conditions that produce readily recognizable canopy–understorey associations that are repeated with great fidelity on a regional scale.