Comparison of Macroinvertebrate‐Derived Stream Quality Metrics Between Snag and Riffle Habitats1

Abstract: We compared benthic macroinvertebrate assemblage structure at snag and riffle habitats in 43 Wisconsin streams across a range of watershed urbanization using a variety of stream quality metrics. Discriminant analysis indicated that dominant taxa at riffles and snags differed; Hydropsychid caddisflies (Hydropsyche betteni and Cheumatopsyche spp.) and elmid beetles (Optioservus spp. and Stenemlis spp.) typified riffles, whereas isopods (Asellus intermedius) and amphipods (Hyalella azteca and Gammarus pseudolimnaeus) predominated in snags. Analysis of covariance indicated that samples from snag and riffle habitats differed significantly in their response to the urbanization gradient for the Hilsenhoff biotic index (BI), Shannon’s diversity index, and percent of filterers, shredders, and pollution intolerant Ephemeroptera, Plecoptera, and Trichoptera (EPT) at each stream site (p ≤ 0.10). These differences suggest that although macroinvertebrate assemblages present in either habitat type are sensitive to detecting the effects of urbanization, metrics derived from different habitats should not be intermixed when assessing stream quality through biomonitoring. This can be a limitation to resource managers who wish to compare water quality among streams where the same habitat type is not available at all stream locations, or where a specific habitat type (i.e., a riffle) is required to determine a metric value (i.e., BI). To account for differences in stream quality at sites lacking riffle habitat, snag‐derived metric values can be adjusted based on those obtained from riffles that have been exposed to the same level of urbanization. Comparison of nonlinear regression equations that related stream quality metric values from the two habitat types to percent watershed urbanization indicated that snag habitats had on average 30.2 fewer percent EPT individuals, a lower diversity index value than riffles, and a BI value of 0.29 greater than riffles.     

INFLUENCES OF INCREASED SAND DELIVERY ON THE MORPHOLOGY OF SAND AND GRAVEL CHANNELS1

ABSTRACT A flume study was conducted to examine (1)changes in the particle-size distribution of sediments in riffles due to the proportion of sand in transport and the total rate of bedload transport at the time the riffle is deposited and (2) the effect of high sand transport rates on the stability of gravel riffles. The median particle size of sediment deposited in the riffle was larger than that of the sediment in transport. Small but significant (a = 0.05) decreases in the median particle size of riffle sediments resulted as the sand-to-gravel ratio. Increased concentrations of sand in transport caused previously stable gravel riffles to undergo scour. These results, in combination with information from other studies, suggest that an alluvial channel with pool-riffle sequences and with sand and gravel beds may respond to an increased delivery of sand by reducing form roughness. Form roughness can be reduced by degrading riffles and filling pools. Subsequent responses may be increases in width-to-depth ratio and slope.     

BEDLOAD TRANSPORT IN A POOL-RIFFLE SEQUENCE OF A COASTAL ALASKA STREAM1

ABSTRACT: A Helley-Smith pressure differential bedload sampler was used to measure bedload transport at consecutive riffle sections of a riffle-pool-riffle sequence on Bambi Creek, a small (154 ha), second-order stream on Chichagof Island, Alaska, during four storms over a 2-year period. Maximum bedload transport rate measured was 4920 kg/h at a streamflow of 2.35 m³/s corresponding to a storm having a 5-year return interval. Transport of larger sediment (> 8 mm) varied systematically with streamflow at the two sampling locations. At flows up to approximately bankfull, transport of large sediment was greatest at the upstream site; at flows above bankfull, transport of large sediment was greatest at the downstream site. The net import of large sediment to the pool during moderate stormflows and net export of large sediment from the pool during flows above bankfull may be related to a “convergence” or “reversal” of competence between the upstream riffle and subsequent pool at flows approximating bankfull stage. Cross-sections monitored within the study reach indicate that stormflows resulted in net filling of the riffle sections and net scour of the pool; periods of low streamflow resulted in net scour of the riffles and net filling of the pooL     

A Comparison of Single and Multiple Habitat Protocols for Collecting Macroinvertebrates in Wadeable Streams1

Abstract: In 2003, we compared two benthic macroinvertebrate sampling methods that are used for rapid biological assessment of wadeable streams. A single habitat method using kick sampling in riffles and runs was compared to a multiple habitat method that sampled all available habitats in proportion of occurrence. Both methods were performed side‐by‐side at 41 sites in lower gradient streams of the Piedmont and Northern Piedmont ecoregions of the United States, where riffle habitat is less abundant. Differences in sampling methods were examined using similarity indices, two multimetric indices [the family‐level Virginia Stream Condition Index (VSCI) and the species‐level Macroinvertebrate Biotic Integrity Index (MBII)], their component metrics, and bioassessment endpoints based on each index. Index scores were highly correlated between single and multiple habitat field methods, and sampling method comparability, based on comparison of similarities between and within sampling methods, was particularly high for species level data. The VSCI scores and values of most of its component metrics were not significantly higher for one particular method, but relationships between single and multiple habitat values were highly variable for percent Ephemeroptera, percent chironomids, and percent Plecoptera and Trichoptera (Hydropsychidae excluded). A similar level of variability in the relationship was observed for the MBII and most of its metrics, but Ephemeroptera richness, percent individuals in the dominant five taxa, and Hilsenhoff Biotic Index scores all exhibited differences in values between single and multiple habitat field methods. When applied to multiple habitat samples, the MBII exhibited greater precision, higher index scores, and higher assessment categories than when applied to single habitat samples at the same sites. In streams with limited or no riffle habitats, the multiple habitat method should provide an adequate sample for biological assessment, and at sites with abundant riffle habitat, little difference would be expected between the single and multiple habitat field methods. Thus, in geographic areas with a wide variety of stream types, the multiple habitat method may be more desirable. Even so, the variability in the relationship between single and multiple habitat methods indicates that the data are not interchangeable, and we suggest that any change in sampling method should be accompanied by a recalibration of any existing assessment tool (e.g., multimetric index) with data collected using the new method, regardless of taxonomic level.     

AQUATIC HABITAT CONDITION INDEX,STREAM TYPE,AND LWESTOCK BANK DAMAGE IN NORTHERN NEVADA1

ABSTRACT: The quality of stream habitat varies for a variety of natural and anthropogenic reasons not identified by a condition index. However, many people use condition indices to indicate management needs or even direction. To better sort natural from livestock influences, stream types and levels of ungulate bank damage were regulated to estimates of aquatic habitat condition index and stream width parameters in a large existing stream inventory data base. Pool/riffle ratio, pool structure, stream bottom materials, soil stability, and vegetation type varied significantly with stream type. Pool/riffle ratio, soil and vegetation stability varied significantly with ungulate bank damage level. Soil and vegetation stability were highly cross-correlated. Riparian area width did not vary significantly with either stream type or ungulate bank damage. Variation among stream types indicates that riparian management and monitoring should be stream type and reach specific.     

USING STREAM BIOASSESSMENT PROTOCOLS TO MONITOR IMPACTS OF A CONFINED SWINE OPERATION1

ABSTRACT: The processing of waste from confined animal feeding operations (CAFOs) presents a major environmental challenge. Treatment of waste and subsequent land application is a common best management practice (BMP) for these operations in Kentucky, USA, but there are few data assessing the effect of runoff from such operations on aquatic communities. The authors sampled a stream bordering a CAFO with a land application program to determine if runoff from the fertilized fields was adversely affecting stream communities. Water chemistry, periphyton, and macroinvertebrate samples from riffle habitats downstream of the CAFO were compared to samples collected from an upstream site and a control stream in 1999 and 2000. Riffle communities downstream of the fertilized fields had higher chlorophyll a levels than other sites, but there were no significant differences in macroinvertebrate numbers or in biometrics such as taxa richness among the sites. The BMP in place at this site may be effective in reducing this CAFO's impact on the stream; however, similar assessments at other CAFO sites should be done to assess their impacts. Functional measures such as nutrient retention and litter decomposition of streams impacted by CAFOs should also be investigated to ensure that these operations are not adversely affecting stream communities.     

Morphology Characteristics of Southern Appalachian Wilderness Streams1

Zink, Jason M., Gregory D. Jennings, and G. Alexander Price, 2012. Morphology Characteristics of Southern Appalachian Wilderness Streams. Journal of the American Water Resources Association (JAWRA) 48(4): 762‐773. DOI: 10.1111/j.1752‐1688.2012.00647.x Abstract: Watersheds without urbanization or impacts from logging are rare in the southern Appalachian Mountains. The Joyce Kilmer/Slickrock Wilderness of North Carolina and Tennessee contains 24 km² of old‐growth forest, with the balance of the wilderness in a mature second‐growth forest. The watersheds of Little Santeetlah and Slickrock Creek are located within the wilderness. Morphological information, including channel dimensions and longitudinal profiles, was gathered from 14 alluvial stream reaches in these watersheds. The study sites had drainage areas from 0.25 to 41.6 km² and stream slopes from 0.014 to 0.104 m/m. Bankfull cross‐section dimensions of the study stream reaches were strongly correlated to drainage area across the observed range of slopes and bed morphology. Cross‐section area and width relationships for the streams in this study did not differ significantly from regional curves for the mountain physiographic region of North Carolina. Observations of these reaches did not suggest a definitive rule regarding the proportion of steps and riffles in streams. Pools occupied greater than 50% of the length in all stream reaches with slopes less than 0.07 m/m. Significant correlation existed between step height ratio and slope, suggesting that step height can be approximated as the product of channel width and slope. Riffle length and riffle slope ratios were also significantly correlated with slope, though pool spacing was not.     

RELATIONSHIPS BETWEEN PARTICLE MOVEMENT AND CHANNEL MORPHOLOGY IN SOME NORTHERN IDAHO STREAMS1

ABSTRACT: Data were collected in 1992 from 17 mountain streams located within fine- to coarse-grained schist formations on the Idaho Panhandle National Forests. These were used to examine predictive relationships potentially useful in monitoring stream channel stability and fishery habitat. Channel morphology, sediment, and lithological data were obtained at 123 riffle sites. An analysis of materials deposited on gravel bars showed that at most sites, critical grain size, calculated using Duboy's tractive force equation, often does not provide accurate estimates of particle sizes moved at bankfull discharge. The tractive force equation gave reasonable estimates (± 10 mm) at 16 percent of the sites, but significantly over- or underestimated the sizes at the remaining sites. Regression and discriminant analysis showed that the relationship between critical grain size and the geometric mean diameter of material deposited on gravel bars was influenced most by the substrate size, slope, and width-to-depth ratio. Similarly, lithology was correlated with the size of particles moved. Particle sizes moved at bankfull discharge were not well correlated with residual pool depth or pool length.     

Improvements in Fluvial Stability Associated with Two‐Stage Ditch Construction in Mower County,Minnesota

Water quality and stream habitat in agricultural watersheds are under greater scrutiny as hydrologic pathways are altered to increase crop production. Agricultural drainage ditches function to remove water quickly from farmed landscapes. Conventional ditch designs lack the form and function of natural stream systems and tend to be unstable and provide inadequate habitat. In October of 2009, 1.89 km of a conventional drainage ditch in Mower County, Minnesota, was converted to an alternative system with a two‐stage channel to investigate the improvements in water quality, stability, and habitat. Longitudinal surveys show a 12‐fold increase in the pool‐riffle formation. Cross‐sectional surveys show an average increase in bankfull width of approximately 10% and may be associated to an increased frequency in large storm events. The average increase in bankfull depth was estimated as 18% but is largely influenced by pool formation. Rosgen Stability Analyses show the channel to be highly stable and the banks at a low risk of erosion. The average bankfull recurrence interval was estimated to be approximately 0.30 years. Overall, the two‐stage ditch design demonstrates an increase in fluvial stability, creating a more consistent sediment budget, and increasing the frequency of important instream habitat features, making this best management practice a viable option for addressing issues of erosion, sediment imbalance, and poor habitat in agricultural drainage systems.     

Evaluation of Deposited Sediment and Macroinvertebrate Metrics Used to Quantify Biological Response to Excessive Sedimentation in Agricultural Streams

The objective of this study was to evaluate which macroinvertebrate and deposited sediment metrics are best for determining effects of excessive sedimentation on stream integrity. Fifteen instream sediment metrics, with the strongest relationship to land cover, were compared to riffle macroinvertebrate metrics in streams ranging across a gradient of land disturbance. Six deposited sediment metrics were strongly related to the relative abundance of Ephemeroptera, Plecoptera and Trichoptera and six were strongly related to the modified family biotic index (MFBI). Few functional feeding groups and habit groups were significantly related to deposited sediment, and this may be related to the focus on riffle, rather than reach-wide macroinvertebrates, as reach-wide sediment metrics were more closely related to human land use. Our results suggest that the coarse-level deposited sediment metric, visual estimate of fines, and the coarse-level biological index, MFBI, may be useful in biomonitoring efforts aimed at determining the impact of anthropogenic sedimentation on stream biotic integrity.     

Flow‐Biology Relationships Based on Fish Habitat Guilds in North Carolina

The health of freshwater biota is dependent on streamflow, yet identification of the flow regimes required to maintain ecological integrity remains challenging to states in the United States seeking to establish ecological flows. We tested the relationship between decreases in streamflow and Shannon‐Weaver diversity index of fish species for four flow‐based habitat guilds: riffle, riffle‐run, pool‐run, and pool in North Carolina. We found species that prefer shallow habitats, such as riffles and riffle‐runs were the most sensitive to decreases in streamflow; whereas no significant relationships were found for pool or pool‐run species. The sensitivity to decreases in streamflow was greatest during summer and fall, when streams are naturally lower. When all fish habitat guilds were included in the assessment of flow‐biology relationships, there were no significant relationships to decreases in streamflow. As the sensitivity of fish to reductions in streamflow is not constant across habitat guilds, combining all fish species together for flow‐biology analyses may greatly underestimate the response of fish species to decreases in flow and should be acknowledged when establishing ecological flows.     

TRANSPORT OF ROAD-SURFACE SEDIMENT THROUGH EPHEMERAL STREAM CHANNELS1

ABSTRACT: Since the majority of road drainage points in western Washington and Oregon enter small, often ephemeral streams rather than large, fish-bearing waters, impact of road-surface sediment on biota in permanent streams depends, to a large extent, on transport through these small watercourses. A series of experimental additions of road-surface sediment was made to two ephemeral streams to examine the downstream transport of this material as a function of discharge and channel characteristics. These small streams were found to store large amounts of sediment washed from road surface. In no instance did either stream transport more than 45 percent of the added material to their mouths, distances of 95 and 125 m. Larger-sized sediment particles were delivered at a lower rate than finer material. Added sediment <0.063 mm in size was transported efficiently through the systems at all but the lowest flows tested. Material between 0.5 and 0.063 mm and from 2.0 to 0.5 mm in size were retained at progressively higher rates, with sediment in the coarser size category never exceeding a delivery of 10 percent of the added material. There were significant differences in the transport of sediment in the two larger size categories between the two streams. These differences were due to a much greater amount of woody debris in the stream with the lower delivery rates, which acted to trap and hold sediment, as well as a slightly longer and less steep channel.     

THE VOLUME OF FINE SEDIMENT IN POOLS: AN INDEX OF SEDIMENT SUPPLY IN GRAVEL-BED STREAMS1

ABSTRACT: During waning flood flows in gravel-bed streams, finegrained bedload sediment (sand and fine gravel) is commonly winnowed from zones of high shear stress, such as riffles, and deposited in pools, where it mantles an underlying coarse layer. As sediment load increases, more fine sediment becomes available to fill pools. The volume of fine sediment in pools can be measured by probing with a metal rod, and, when expressed as the fraction (V*) of scoured residual pooi volume (residual pool volume with fine sediment removed), can be used as an index of the supply of mobile sediment in a stream channel. Mean values of V* were as high as 0.5 and correlated with qualitative evaluations of sediment supply in eight tributaries of the Trinity River, northwestern California. Fine-sediment volume correlated strongly with scoured pool volume in individual channels, but plots of V* versus pool volume and water surface slope revealed secondary variations in fines volume. In sediment-rich channels, V* correlated positively with scoured pool volume; in sediment-poor channels, V* correlated negatively with water-surface slope. Measuring fine sediment in pools can be a practical method to evaluate and monitor the supply of mobile sediment in gravel-bed streams and to detect and evaluate sediment inputs along a channel network.     

RESEARCH: Warmwater Stream Bank Protection and Fish Habitat: A Comparative Study

/ Fishes and their habitats were sampled in Harland Creek, Mississippi, for 3 years to compare the relative value of three types of bank treatment in an incised, warmwater stream. Semiannual samples were collected from 10 reaches: 3 reaches protected by each of the three types of protection (longitudinal stone toe, stone spurs, and dormant willow posts) and an unprotected, slowly eroding bend. Protection of concave banks of bends had no measurable effect on the habitat quality of downstream riffles. Although bends and adjacent downstream riffles were faunistically similar at the species level, catostomids and centrarchids were more dominant in pools and smaller cyprinids more dominant in riffles. Reaches with willow posts were slightly deeper than the others, most likely because of geomorphic factors rather than bank treatment. Mean water surface widths in reaches stabilized with stone spurs were 40% to 90% greater than for other treatments, and current velocities were greatest in reaches with stone toe. Patterns of fish abundance and species diversity did not differ significantly among treatments. However, principal components analysis indicated that the fish species distribution associated with the untreated reference site was distinct. Reaches stabilized with stone spurs supported significantly higher densities of large fish and higher levels of fish biomass per unit channel length than reaches with other bank treatments, generally confirming previous research in the region. Initial costs for spurs were comparable to those for stone toe and about three times greater than for willow posts.     

MORPHOLOGICAL FEATURES OF SMALL STREAMS: SIGNIFICANCE AND FUNCTION1

ABSTRACT: Throughout the United States, land managers are becoming increasingly aware of the importance of small streams for a wide range of resource benefits. Where channel morphology is modified or structural features are added, stream dynamics and energy dissipation need to be considered. Unit stream power, defined here as the time-rate loss of potential energy per unit mass of water, can be reduced by adding stream obstructions, increasing channel sinuosity, or increasing flow resistance with large roughness elements such as woody root systems, logs, boulders, or bedrock. Notable morphological features of small streams are pools, riffles, bed material, and channel banks. Pools, which vary in size, shape, and causative factors, are important rearing habitat for fish. Riffles represent storage locations for bed material and are generally utilized for spawning. The particle sizes and distributions of bed material influence channel characteristics, bedload transport, food supplies for fish, spawning conditions, cover, and rearing habitat. Riparian vegetation helps stabilize channel banks and contributes in various ways to fish productivity. Understanding each stream feature individually and in relation to all others is essential for proper stream management. Although engineered structures for modifying habitat may alter stream characteristics, channel morphology must ultimately be matched to the hydraulic, geologic, and (especially) vegetative constraints of a particular location.     

Morphology of a Wetland Stream

/ Little attention has been paid to wetland stream morphology in the geomorphological and environmental literature, and in the recently expanding wetland reconstruction field, stream design has been based primarily on stream morphologies typical of nonwetland alluvial environments. Field investigation of a wetland reach of Roaring Brook, Stafford, Connecticut, USA, revealed several significant differences between the morphology of this stream and the typical morphology of nonwetland alluvial streams. Six morphological features of the study reach were examined: bankfull flow, meanders, pools and riffles, thalweg location, straight reaches, and cross-sectional shape. It was found that bankfull flow definitions originating from streams in nonwetland environments did not apply. Unusual features observed in the wetland reach include tight bends and a large axial wavelength to width ratio. A lengthy straight reach exists that exceeds what is typically found in nonwetland alluvial streams. The lack of convex bank point bars in the bends, a greater channel width at riffle locations, an unusual thalweg location, and small form ratios (a deep and narrow channel) were also differences identified. Further study is needed on wetland streams of various regions to determine if differences in morphology between alluvial and wetland environments can be applied in order to improve future designs of wetland channels.KEY WORDS: Stream morphology; Wetland restoration; Wetland creation; Bankfull; Pools and riffles; Meanders; Thalweg     

Channel change,sediment transport,and fish habitat in a coastal stream: Effects of an extreme event

A study on sediment transport and channel change was conducted on Zayante Creek and the lower San Lorenzo River in Santa Cruz County, California. A rainstorm with a recurrence interval locally in excess of 150 years occurred during the study year, 1982 WY. Stream surveys indicated that significant aggradation occurred during and after the peak flood. Upper study reaches were substantially recovered after high flows of early April, but the lower study reaches still had significant filling of pools and burial of riffles by sand. Increases in width-depth ratio were minor and localized in upper reaches, but were significant in lower reaches. Large inputs of sand, primarily from landsliding, altered the sediment transport regime. A higher proportion of the bedload is now transported by lower flows than before the January event. Roads and sand quarries contributed significantly to sediment input to the stream. A proposed dam may alter the sediment transport regime of Zayante Creek. Mitigating the effects of this dam on downstream fish habitat may require occasional bankfull discharges.     

A Two‐Decade Watershed Approach to Stream Restoration Log Jam Design and Stream Recovery Monitoring: Finney Creek,Washington

A federal, state, and private partnership leveraged resources and employed a long‐term, systematic approach to improve aquatic habitat degraded by decades of intensive forest management in Finney Creek, a tributary to the Skagit River of Northwest Washington State. After more than a decade of work to reduce sediment sources and the risk of landslides within the watershed, log jam installation commenced in 1999 and progressed downstream through 2010. Log jam design was adapted as experience was gained. A total of 181 log jams, including 60 floating log ballasted jams, were constructed along 12 km of channel. The goal was to alter hydraulic processes that affect aquatic habitat formation along 39 km of stream with emphasis on 18.5 km of lower Finney Creek. Aquatic habitat surveys over a five‐year period show an increase in the area of large pools and an accompanying increase in residual and maximum pool depth in the lower river reach. Channel cross sections show a generally deeper channel at the log jams, better channel definition in the gravel deposits at the head of the log jams, and improved riffle and thalweg development below the log jams. Stream temperature in the upper river decreased by 1.0°F in the first three years, and 1.1°F in the lowest treated reach over nine years. There is a trend of less stream heating over the restoration time period. Photo points show that riparian vegetation is recolonizing gravel bars.     

INFLUENCES OF WATERSHED URBANIZATION AND INSTREAM HABITAT ON MACROINVERTEBRATES IN COLD WATER STREAMS1

ABSTRACT: We analyzed data from riffle and snag habitats for 39 small cold water streams with different levels of watershed urbanization in Wisconsin and Minnesota to evaluate the influences of urban land use and instream habitat on macroinvertebrate communities. Multivariate analysis indicated that stream temperature and amount of urban land use in the watersheds were the most influential factors determining macroinvertebrate assemblages. The amount of watershed urbanization was nonlinearly and negatively correlated with percentages of Ephemeroptera‐Plecoptera‐Trichoptera (EPT) abundance, EPT taxa, filterers, and scrapers and positively correlated with Hilsenhoff biotic index. High quality macroinvertebrate index values were possible if effective imperviousness was less than 7 percent of the watershed area. Beyond this level of imperviousness, index values tended to be consistently poor. Land uses in the riparian area were equal or more influential relative to land use elsewhere in the watershed, although riparian area consisted of only a small portion of the entire watershed area. Our study implies that it is extremely important to restrict watershed impervious land use and protect stream riparian areas for reducing human degradation on stream quality in low level urbanizing watersheds. Stream temperature may be one of the major factors through which human activities degrade cold‐water streams, and management efforts that can maintain a natural thermal regime will help preserve stream quality.