Microbial decomposition of proteins and lipids in copepod versus rotifer carcasses

Zooplankton carcasses are common within aquatic systems and potentially serve as organic-rich substrates for bacteria. We compared the microbial decomposition of representative crustacean (copepod) and non-crustacean (rotifer) zooplankton carcasses and monitored changes in carcass protein and lipid contents. Our results showed that carcass decomposition was mainly driven by bacteria colonizing from the surrounding water. Carcass-associated bacteria displayed higher protease and lipase activities than free-living bacteria. Protein content of copepod carcasses decreased by 70% within the first 8 h and shifted from larger to smaller sized proteins, while protein loss in rotifer carcasses was insignificant. Carcass lipid content did not change significantly over 24 h in either zooplankton type, although polar branched fatty acids increased on copepod carcasses indicating an increase in viable microbial biomass. Our results suggest differential turnover of protein versus lipid within a zooplankton carcass and that carcasses from different zooplankton groups would affect water column microbial processes differently.     

Worm burrows and oxic microniches in marine sediments. 1. Spatial and temporal scales

The upper 2 to 10 cm of shallow-water sediments may represent a mosaic of oxic and anoxic microhabitats. In the studied sediments the volume fraction of patches of oxic sediments decreased with depth from around 0.2 in the upper centimetres to zero at 5 to 10 cm depth. The mean volume fraction of oxic microhabitats beneath a unit surface and down to 5–8 cm depth ranged between 0.06 and 0.16. The mean distance between such neighbouring oxic microniches was several millimetres in the upper centimetres of the sediment. The oxic microniches are caused by sinall (diameter: 0.5 to 2 mm), inhabited worm burrows which have not previously drawn attention in bioturbation studies. An implication is that anaerobic and aerobic microbial processes take place at identical depths. In such sediments the apparent vertical zonation of microbial processes and of microbial biota over a scale of several centimetres reflects the diminishing fraction of oxic habitats with depth rather than an idealised vertical redox sequence (such as found over a few millimetres in microbial mats which develop in the absence of bioturbation).     

Life history of the nematode Theristus anoxybioticus from sublittoral muddy sediment at methane seepages in the northern Kattegat,Denmark

Field and laboratory studies from 1989 to 1994 of the nematode Theristus (Penzancia) anoxybioticus Jensen, 1995 inhabiting muddy sediment at methane seepages in the northern Kattegat, Denmark, have revealed a series of biological features of adults and juveniles not observed before in free-living marine nematodes. Reproductive adults were present in April and May only and inhabited the uppermost cm of sediment, while juveniles inhabited deep anoxic and sulphidic sediment layers during the remaining months of the year. This points to a downwards migration of newly hatched juveniles and an upwards migration during adulthood. Gut content analyses showed that adults feed mainly on benthic diatoms by swallowing whole cells while juveniles probably feed on bacteria; this differentiation in food clearly relates to the main bulk of potential food items in their respective microhabitats. The generation time is estimated to be one year, with a juvenile life span of about nine months, which is four to eight times longer than that found in related aerobic species of similar body size. Adults survived in oxic water but 50% died within 15 h in hypoxic water (5 to 6% atm sat), and all died within 12 h in anoxic water. Juveniles on the other hand died within 0.5 h in oxic water but survived anoxic water for at least 15 d. These results suggest that juveniles of T. anoxybioticus are adapted to an anaerobic life style.     

Mechanism on minimization of excess sludge in oxic-settling-anaerobic (OSA) process

The oxic-settling-anaerobic (OSA) process is a promising wastewater treatment technique for efficiently reducing sludge production and improving the stability of process operation. In this paper, the possible factors of sludge reduction such as sludge decay, uncoupled metabolism, and anaerobic oxidation with low sludge production were discussed in the OSA process. It has been confirmed that sludge decay is the decisive cause in the OSA process, accounting for 66.7% of sludge production reduction. Sludge decay includes hydrolysis and acidogenesis of dead microorganisms and particle organic carbon adsorbed in sludge floc and endogenous metabolism. By batch experiments, it has been proven that there is energetic uncoupling in the OSA system since microorganisms were exposed to alternative anaerobic and aerobic environment. It accounts for about 7.5% of sludge production reduction. Soluble chemical oxygen demand (SCOD) released from the anaerobic sludge tank in the OSA process was used as the substrate for cryptic growth. The substrate was used for anoxic denitrifying, anaerobic phosphorus release, sulfate reduction, and methane production. These anaerobic reactions in the sludge anaerobic tank have lower sludge production than in the aerobic oxidation when equivalent SCOD is consumed, which may lead to approximately 23% of sludge reduction in the OSA process. It has been concluded that multiple causes resulted in the minimization of excess sludge in the OSA system. The microbial community structure and diversity of sludge samples from the CAS (conventional activated sludge) and OSA systems were investigated by 16 SrDNA PCR-DG-DGGE (polymerase chain reaction-double gradient-denaturing gradient gel electrophoresis). DGGE profile and cluster analysis showed more abundant species in the OSA system contrasting to microbial communities in the CAS system.     

Extracellular enzymatic activity and secondary production in free-living and marine-snow-associated bacteria

Abundance, production (measured as thymidine incorporation) and extracellular enzymatic activity in free-living and marine-snow-associated bacteria were measured in the northern Adriatic Sea. Although bacterial density and production were similar in both free-living and marine-snow-associated bacteria, hydrolytic activity (- and -glucosidase and l-aminopeptidase) was significantly higher in marine-snow-associated bacteria, in terms of both absolute and per-cell rates. As concentrations of dissolved total and monomeric carbohydrates and free amino acids in marine snow were very close to those in the ambient water, we suggest that the observed differences between free-living and marine-snow-associated baycteria do not simply reflect catabolic repression of enzyme expression in one of the bacterial components. Whether substrate induction is responsible for the observed higher hydrolase activity in marine-snow bacteria and/or whether there are distinct bacterial species obligatorily associated with marine snow remains unknown.     

Nitrifying and denitrifying bacteria in aerobic granules formed in sequencing batch airlift reactors

The purpose of this study was to investigate nitrifying bacteria and denitrifying bacteria isolated from aerobic granules. Aerobic granules were formed in an internal-circulate sequencing batch airlift reactor (SBAR) and biodegradation of NH₃ ^?-N was analyzed in the reactor. Bacteria were isolated and determined from aerobic granules using selected media. The growth properties and morphology of bacteria colonies were observed by controlling aerobic or anaerobic conditions in the culture medium. It was found that bacteria in aerobic granules were diverse and some of them were facultative aerobes. The diversity of bacteria in aerobic granules was a premise of simultaneous nitrification and denitrification.     

Sulfide and thiosulfate-oxidizing bacteria in anoxic marine basins

The occurrence of sulfide and thiosulfate-oxidizing bacteria was examined in waters and sediments of the Black Sea and the Caraco Trench. Isolates obtained by enrichment-culture techniques exhibited facultative autotrophic-growth characteristics and oxidized thiosulfate or sulfide. Acid was not formed during growth in mineral medium. Most of the isolates were facultatively anaerobic, using nitrate as the terminal hydrogen acceptor. Strictly aerobic bacteria were found only in oxygenated waters. Comparison of the metabolic capabilities of the isolates during growth in sulfide and thiosulfate media with chemical parameters measured in the Black Sea and Cariaco Trench waters suggests that the biological oxidation of thiosulfate is the rate-limiting step in the oxidative turnover of sulfur compounds in the basins. Evidence for the oxidation of sulfide in the anoxic waters is presented, and possible explanations for the occurrence of this process in the absence of suitable electron acceptors (O₂. NO₃) are discussed. A maximum dark assimilation of carbon dioxide was located just below the oxygen-sulfide interface in the Cariaco Trench. Problems of interpreting these data are considered.Contribution No. 2958 of the Woods Hole Occanographic Institution. Supported by the National Science Foundation Grants GA 29665 and GA 33405.     

磺胺嘧啶在水中的微生物降解研究

为了探明磺胺嘧啶在水中的环境行为,通过室内模拟降解实验分别研究了磺胺嘧啶在湖水和猪场废水中的好氧和厌氧微生物降解,考察了供氧方式和有机质含量对磺胺嘧啶微生物降解的影响。结果表明:磺胺嘧啶在猪场废水中厌氧微生物降解速率高于其好氧组,而磺胺嘧啶在湖水中厌氧微生物降解速率低于其好氧组。磺胺嘧啶在湖水和猪场废水中的好氧或厌氧微生物降解均较缓慢,这可能与其较强的抑菌性和微生物的营养状况有关。通过微生物培养还研究了好氧降解时磺胺嘧啶对湖水中微生物种群生长的影响,数据显示:磺胺嘧啶对湖水和猪场废水中细菌的生长具有一定的刺激作用,而对真菌和放线菌的生长影响不明显。     

Origins and microenvironments of bacteria mediating fecal pellet decomposition in the sea

The fecal pellets of zooplankton are thought to be major carriers of organic matter from surface to deeper waters of the oceans. As the pellets descend, they release soluble components, partially due to breakdown by associated microorganisms. Previous laboratory work of other investigators has suggested that the surface of a fecal pellet rapidly acquires bacteria, which increase in abundance until they and their protozoan consumers disrupt the pellet membrane, spilling contents into the water. In contrast, our field collections of fecal pellets from free-floating particle interceptor traps (from the Vertex project off Central California in 1980 and off Mexico in 1981), suggest that microbial decomposition probably is initiated in the sea from inside the fecal pellets. Transmission and scanning electron microscopy indicate that bacterial populations are most abundant in the interior of fecal pellets obtained from the sea, but that the same pellets will acquire the surface bacterial lawn typically observed in laboratory studies if maintained aboard ship. If the fecal pellets are decomposed from the inside, then the principal agents are enteric bacteria or ingested, digestion-resistant bacteria, or both. Such bacteria may differ metabolically from those that colonize the fecal pellet surfaces. Further-more, the abundance of healthy-appearing bacteria inside the pellets suggests that their metabolic activities may produce microhabitats of reduced oxygen tension that could differ considerably from that of the pellet exteriors. Decomposition in these semi-enclosed microenvironments may proceed in a manner not yet predicted by models that attribute decomposition to well-aerated, surface-dwelling bacterial populations on fecal pellets in the sea.     

Tank-dependence of the functionality and network differentiation of activated sludge community in a full-scale anaerobic/anoxic/aerobic municipal sewage treatment plant

● Environmental parameters affected functional bacteria and network associations. ● The structure and interactions of AS networks changed greatly within tanks. ● Anoxic co-occurrence network was more unstable and easily influenced. ● Composition of functional bacteria had a seasonal succession pattern. ● Tetrasphaera was the major PAO in spring and winter leading a better P removal. Understanding the structures and dynamics of bacterial communities in activated sludge (AS) in full-scale wastewater treatment plants (WWTPs) is of both engineering and ecological significance. Previous investigations have mainly focused on the AS communities of WWTP aeration tanks, and the differences and interactions between the communities in anaerobic and anoxic tanks of the AS system remain poorly understood. Here, we investigated the structures of bacterial communities and their inter-connections in three tanks (anaerobic, anoxic, and aerobic) and influent from a full-scale WWTP with conventional anaerobic/anoxic/aerobic (A/A/O) process over a year to explore their functionality and network differentiation. High-throughput sequencing showed that community compositions did not differ appreciably between the different tanks, likely due to the continuous sludge community interchange between tanks. However, network analysis showed significant differences in inter-species relationships, OTU topological roles, and keystone populations in the different AS communities. Moreover, the anoxic network is expected to be more unstable and easily affected by environmental disturbance. Tank-associated environmental factors, including dissolved oxygen, pH, and nutrients, were found to affect the relative abundance of functional genera (i.e., AOB, NOB, PAOs, and denitrifiers), suggesting that these groups were more susceptible to environmental variables than other bacteria. Therefore, this work could assist in improving our understanding of tank-associated microbial ecology, particularly the response of functional bacteria to seasonal variations in WWTPs employing A/A/O process.     

Anaerobic and aerobic energy metabolism in ovaries of the sea urchin Strongylocentrotus droebachiensis

The gonads of sea urchins undergo large changes in mass during their gametogenic cycle. In addition, they have relatively low aerobic capacities and are poorly perfused by the circulatory system and thus are continually hypoxic or anoxic. The present study of Strongylocentrotus droebachiensis investigates seasonal changes in the relationships among mass of the ovaries, pH and P_O2 of the perivisceral coelomic fluid which bathes the ovaries, and partitioning of ovary energy metabolism into its anaerobic and aerobic components. S. droebachiensis were collected at Blue Hill Falls, Maine, USA, from August 1982 to March 1984. We found that from 76 to 92% of the heat dissipated by isolated ovaries of the sea urchin S. droebachiensis derives from anaerobic energy metabolism at partial pressures of oxygen prevailing in vivo. Ovaries from S. droebachiensis have the capacity to produce large amounts of lactate under imposed anoxia, but lactate accounts for only 37% of the total anoxic heat dissipation, which suggests that other end products of anaerobiosis are present. Seasonal changes in pH and P_O2 of the perivisceral coelomic fluid can be explained by a complex relationship among changes in temperature, reproductive condition, and anaerobic and aerobic metabolism in the ovaries, gut and body wall. Seasonal changes in the buffering capacity of the perivisceral coelomic fluid must be determined before the effects of respiratory and metabolic acid production on the acid-base status of the coelomic fluid can be fully understood.     

Evaluation of the effect of antimicrobials in marine cultures,using the copepod Acartia tonsa as a bioindicator

Cultures of the copepod Acartia tonsa are used both in aquaculture and ecotoxicology studies. However, the cultivation of these crustaceans at high densities results in the proliferation of microorganisms that can affect the organisms of interest, leading to illness or death. Antimicrobials inhibit microbial growth and may favour the cultivated species, aiding the development of ecological studies. This study investigated the potential of antimicrobials (antibiotic + antifungal) to inhibit bacteria and fungi when applied to marine zooplankton cultures, using the copepod A. tonsa as a bioindicator of acute toxicity. Treatment with 0.025?g?L^?1 of penicillin G potassium + 0.08?g?L^?1 of streptomycin sulphate + 0.04?g?L^?1 of neomycin sulphate + 0.005?g?L^?1 of nystatin resulted in 95% bacterial inhibition (after 12?h of exposure); however, after this time, the inhibitory effect was lost. The antimicrobial combination tested in this study prevented colonisation by fungi until 168?h after exposure, without causing acute toxicity to A. tonsa. Thus, it has potential for use in marine cultures of less sensitive organisms.     

The role of environmental and spatial processes in structuring lake communities from bacteria to fish

We assessed the relative roles of local environmental conditions and dispersal on community structure in a landscape of lakes for the major trophic groups. We use taxonomic presence-absence and abundance data for bacteria, phytoplankton, zooplankton, and fish from 18 lakes in southern Quebec, Canada. The question of interest was whether communities composed of organisms with more limited dispersal abilities, because of size and life history (zooplankton and fish) would show a different effect of lake distribution than communities composed of good dispersers (bacteria and phytoplankton). We examine the variation in structure attributable to local environmental (i.e., lake chemical and physical variables) vs. dispersal predictors (i.e., overland and watercourse distances between lakes) using variation partitioning techniques. Overall, we show that less motile species (crustacean zooplankton and fish) are better predicted by spatial factors than by local environmental ones. Furthermore, we show that for zooplankton abundances, both overland and watercourse dispersal pathways are equally strong, though they may select for different components of the community, while for fish, only watercourses are relevant dispersal pathways. These results suggest that crustacean zooplankton and fish are more constrained by dispersal and therefore more likely to operate as a metacommunity than are bacteria and phytoplankton within this studied landscape.     

糖类在城市污水生物处理系统中的去除机理

研究了厌氧、缺氧和好氧状态下淀粉在城市污水生物处理系统中水相和泥相中吸附和降解的动力学参数,建立了淀粉在厌氧、缺氧、好氧状态下的降解动力学模型,并对模型预测的结果进行了验证.结果表明,Fritz-Schlunder模型可以较好地描述糖类在厌氧、缺氧和好氧污泥上的吸附过程,吸附的大分子糖类迅速水解为低一级的高分子物质和小分子物质;厌氧降解速率系数K厌、缺氧的降解速率系数K缺与好氧的降解速率常数的比值分别为0.40和0.64;所建立的动力学模型能较好的预测出水糖类的浓度(相对误差<10%).     

Bacterial communities of the marine sponges Hymeniacidon heliophila and Polymastia janeirensis and their environment in Rio de Janeiro, Brazil

In this study we performed a survey of the bacterial communities associated with the Western Atlantic demosponges Hymeniacidon heliophila and Polymastia janeirensis, based on 16S rRNA sequencing and transmission electron microscopy (TEM). We compared diversity and composition of the sponge-associated bacteria to those of environmental bacteria, represented by free-living bacterioplankton and by bacteria attached to organic particulate matter in superficial sediments. Partial bacterial 16S rRNA sequences from seawater, sediment, and sponges were retrieved by PCR, cloning, and sequencing. Sequences were subjected to rarefaction analyses, phylogenetic tree construction, and LIBSHUFF quantitative statistics to verify coverage and similarity between libraries. Community structure of the free-living bacterioplankton was phylogenetically different from that of the sponge-associated bacterial assemblages. On the other hand, some sediment-attached bacteria were also found in the sponge bacterial community, indicating that sponges may incorporate bacteria together with sediment particles. Rare and few prokaryotic morphotypes were found in TEM analyses of sponge mesohyl matrix of both species. Molecular data indicate that bacterial richness and diversity decreases from bacterioplankton, to particulate organic sediment, and to H. heliophila and P. janeirensis. Sponges from Rio de Janeiro harbor a pool of novel and exclusive sponge-associated bacterial taxa. Sponge-associated bacterial communities are composed of both taxons shared by many sponge groups and by species-specific bacteria.     

利用下水管网系统净化城市污水的模拟试验

用固定化细胞技术进行了下水管网系统污水净化的模拟试验,比较研究了厌氧、好氧、厌氧缺氧好氧、缺氧好氧４ 种工艺净化污水的效果．结果表明,在管网系统中设置固定化细胞,采用缺氧好氧工艺流程,可使污水中的污染物去除６０％ 以上,出水水质可达国家污水综合排放二级标准．     

Simultaneous denitrifying phosphorus accumulation in a sequencing batch reactor

In order to achieve simultaneous nitrogen and phosphorus removal in the biological treatment process, denitrifying phosphorus accumulation (DNPA) and its affecting factors were studied in a sequencing batch reactor (SBR) with synthetic wastewater. The results showed that when acetate was used as the sole carbon resource in the influent, the sludge acclimatized under anaerobic/aerobic operation had good phosphorus removal ability. Denitrifying phosphorus accumulation was observed soon when fed with nitrate instead of aeration following the anaerobic stage, which is a vital premise to DNPA. If DNPA sludge is fed with nitrate prior to the anaerobic stage, the DNPA would weaken or even disappear. At the high concentration of nitrate fed in the anoxic stage, the longer anoxic time needed, the better the DNPA was. Induced DNPA did not disappear even though an aerobic stage followed the anoxic stage, but the shorter the aerobic stage lasted, the higher the proportions of phosphorus removal via DNPA to total removal.     

Quantification of copepod gut content by differential length amplification quantitative PCR (dla-qPCR)

Quantification of feeding rates and selectivity of zooplankton is vital for understanding the mechanisms structuring marine ecosystems. However, methodological limitations have made many of these studies difficult. Recently, molecular based methods have demonstrated that DNA from prey species can be used to identify zooplankton gut contents, and further, quantitative gut content estimates by quantitative PCR (qPCR) assays targeted to the 18S rRNA gene have been used to estimate feeding rates in appendicularians and copepods. However, while standard single primer based qPCR assays were quantitative for the filter feeding appendicularian Oikopleura dioica, feeding rates were consistently underestimated in the copepod Calanus finmarchicus. In this study, we test the hypothesis that prey DNA is rapidly digested after ingestion by copepods and describe a qPCR-based assay, differential length amplification qPCR (dla-qPCR), to account for DNA digestion. The assay utilizes multiple primer sets that amplify different sized fragments of the prey 18S rRNA gene and, based on the differential amplification of these fragments, the degree of digestion is estimated and corrected for. Application of this approach to C. finmarchicus fed Rhodomonas marina significantly improved quantitative feeding estimates compared to standard qPCR. The development of dla-qPCR represents a significant advancement towards a quantitative method for assessing in situ copepod feeding rates without involving cultivation-based manipulation.     

Degradation rates of aged petroleum hydrocarbons are likely to be mass transfer dependent in the field

Evidence for on site biodegradation may be difficult to provide at heterogeneous sites without additional experiments in controlled laboratory conditions. In this study, microbial activities measured as CO₂ and CH₄ production were compared in situ, in intact soil cores and in bottle microcosms containing sieved soils. In addition, biodegradation rates were determined by measuring the decrease in petroleum hydrocarbon concentrations at 7°C in aerobic and anaerobic conditions. Elevated concentrations of CO₂ and CH₄ in the soil gas phase indicated that both the aerobic and anaerobic microbial activity potentials were high at the contaminated site. Aerobic and anaerobic microbial degradation rates in laboratory experiments of petroleum hydrocarbons were highest in soils from the most contaminated point and degradation in the aerobic and anaerobic microcosms was linear throughout the incubation, indicating mass-transfer-dependent degradation. Different results for microbial activity measurements were obtained in laboratory studies depending on pretreatment and size of the sample, even when the environmental conditions were mimicked. These differences may be related to differences in the gas exchange rates as well as in changes in the bioavailability of the contaminant in different analyses. When predicting by modeling the behavior of an aged contaminant it is relevant to adapt the models in use to correspond to conditions relevant at the contaminated sites. The variables used in the models should be based on data from the site and on experiments performed using the original aged contaminant without any additions.     

Widespread occurrence of extensive epimural rod bacteria in the hindguts of marine Thalassinidae and Brachyura (Crustacea: Decapoda)

Direct observation by scanning electron microscopy indicates that the presence of bacteria (epimural and unattached) in the hindguts of Crustacea is widespread, occurring across taxa (two infraorders, i.e., Brachyura and Thalassinidae, nine genera, 16 species), feeding types (detritivores, scavengers and carnivores), habitats (mangroves, saltmarshes, sand/mudflats) and continents (North America, South Africa, Australia). Crustacean hindguts clearly represent suitable environments for colonization by micro-organisms, despite the lack of specialized structures or modifications of the gut to facilitate this. Mats of closely-packed epimural rods and scattered epimural rods were the most common types of bacteria observed in the guts of the Crustacea examined, although unattached rods and scattered epimural cocci occurred in some species. There were, however, taxon-dependent differences in colonization characteristics of hindgut bacteria, possibly related to differences in gut lining. Abundance of hindgut microflora was unrelated to the host's taxon, habitat or geographical locality, but appeared to be affected by the feeding habits of the animal. Mats of epimural rods were associated exclusively with detritivores, while cocci were only observed in the hindguts of scavengers and carnivores. Moreover, extensive colonization by epimural rod bacteria (covering >50% of the hindgut lining) was observed in detritivores only, while carnivores harboured few or no rod bacteria. The detritivore hindgut appears to provide a better environment for microbial habitation than does that of carnivorous crustaceans. In all cases the rod bacteria were monocultures of morphologically identical bacteria and were remarkably similar among crustacean species. The potential significance of prolific microbial colonization in the hindguts of crustaceans deserves consideration.Communicated by O. Kinne, Oldendorf/Luhe