Including Public Perspectives in Industrial Biotechnology and the Biobased Economy

Industrial (“white”) biotechnology promises to contribute to a more sustainable future. Compared to current production processes, cases have been identified where industrial biotechnology can decrease the amount of energy and raw materials used to make products and also reduce the amount of emissions and waste produced during production. However, switching from products based on chemical production processes and fossil fuels towards “biobased” products is at present not necessarily economically viable. This is especially true for bulk products, for example ethanol production from biomass. Therefore, scientists are also turning to genetic modification as a means to develop organisms that can produce at lower costs. These include not only micro-organisms, but also organisms used in agriculture for food and feed.The use of genetic modification for “deliberate release” purposes, in particular, has met great opposition in Europe. Many industrial biotechnology applications may, due to their scale, entail deliberate releases of GM organisms. Thus, the biobased economy brings back a familiar question; is it ethically justifiable, and acceptable to citizens, to expose the environment and society to the risks associated with GM, in order to protect that same environment and to sustain our affluent way of life? For a successful innovation towards a biobased economy, its proponents, especially producers, need to take into account (take responsibility for) such issues when developing new products and processes. These issues, and how scientists can interact with citizens about them in a timely way, are further explored in projects at Delft University and Leiden University, also in collaboration with Utrecht University.     

Conservation and Management for Multiple Species: Integrating Field Research and Modeling into Management Decisions

Multiple-species reserves aim at supporting viable populations of selected species. Population viability analysis (PVA) is a group of methods for predicting such measures as extinction risk based on species-specific data. These methods include models that simulate the dynamics of a population or a metapopulation. A PVA model for the California gnatcatcher in Orange County was developed with landscape (GIS) data on the habitat characteristics and requirements and demographic data on population dynamics of the species. The potential applications of this model include sensitivity analysis that provides guidance for planning fieldwork, designing reserves, evaluating management options, and assessing human impact. The method can be extended to multiple species by combining habitat suitability maps for selected species with weights based on the threat faced by each species, and the contribution of habitat patches to the persistence of each species. These applications and extensions, together with the ability of the model to combine habitat and demographic data, make PVA a powerful tool for the design, conservation, and management of multiple species reserves.     

Major Energy Plants and Their Potential for Bioenergy Development in China

China is rich in energy plant resources. In this article, 64 plant species are identified as potential energy plants in China. The energy plant species include 38 oilseed crops, 5 starch-producing crops, 3 sugar-producing crops and 18 species for lignocellulosic biomass. The species were evaluated on the basis of their production capacity and their resistance to salt, drought, and/or low temperature stress. Ten plant species have high production and/or stress resistance and can be potentially developed as the candidate energy plants. Of these, four species could be the primary energy plants in China: Barbados nut (Jatropha curcas L.), Jerusalem artichoke (Helianthus tuberosus L.), sweet sorghum (Sorghum bicolor L.) and Chinese silvergrass (Miscanthus sinensis Anderss.). We discuss the use of biotechnological techniques such as genome sequencing, molecular markers, and genetic transformation to improve energy plants. These techniques are being used to develop new cultivars and to analyze and manipulate genetic variation to improve attributes of energy plants in China.     

A COMPARISON OF METHODS AND INSTRUMENTATION OF BIOLOGICAL EARLY WARNING SYSTEMS1

ABSTRACT: Rapid biological information systems using aquatic organisms to monitor water and waste water quality have only recently begun to develop technologically for practical on-site applications. One approach which has been demonstrating its feasibility recently monitors the ventilatory behavior of fish to assess, for example, the quality of drinking water supplies and industrial waste water discharges. A comparison of the basic strategies of the various biological monitoring systems making use of this concept is presented. In addition, the applications and potential utilization of these systems are discussed.     

“The Moral Difference between Intragenic and Transgenic Modification of Plants”

Public policy on the development and use of genetically modified organisms (GMOs) has mainly been concerned with defining proper strategies of risk management. However, surveys and focus group interviews show that although lay people are concerned with risks, they also emphasize that genetic modification is ethically questionable in itself. Many people feel that this technology “tampers with nature” in an unacceptable manner. This is often identified as an objection to the crossing of species borders in producing transgenic organisms. Most scientists reject these opinions as based on insufficient knowledge about biotechnology, the concept of species, and nature in general. Some recent projects of genetic modification aim to accommodate the above mentioned concerns by altering the expression of endogenous genes rather than introducing genes from other species. There can be good scientific reasons for this approach, in addition to strategic reasons related to greater public acceptability. But are there also moral reasons for choosing intragenic rather than transgenic modification? I suggest three interrelated moral reasons for giving priority to intragenic modification. First, we should respect the opinions of lay people even when their view is contrary to scientific consensus; they express an alternative world-view, not scientific ignorance. Second, staying within species borders by strengthening endogenous traits reduces the risks and scientific uncertainty. Third, we should show respect for nature as a complex system of laws and interconnections that we cannot fully control. The main moral reason for intragenic modification, in our view, is the need to respect the “otherness” of nature.     

Chemical environment manipulation for pest insects control

The chemical environment of pest species may be considered a habitat susceptible to management Management may be by means of manipulation of the environment of the pest for population suppression or for enhancement of natural enemies Examples of each are reviewed here Chemical stimuli influencing the behavior of phytophagous insects include host plant originated stimuli and pheromones The latter, especially sex pheromones, have proved most successful as tools for manipulation of pest population dynamics Factors influencing search behavior of natural enemies include habitat characteristics such as crop, associated plants and plant assemblages, host plant characteristics, influence of associated organisms, and characteristics of the searching entomophage Recent studies have shown potential for simultaneous management of a pest species and enhancement of natural enemies using pest pheromones     

Environmental Exposure of Aquatic and Terrestrial Biota to Triclosan and Triclocarban1

Abstract: The synthetic biocides triclosan (5‐chloro‐2‐(2,4‐dichlorophenoxy)phenol) and triclocarban (3,4,4′‐trichlorocarbanilide) are routinely added to a wide array of antimicrobial personal care products and consumer articles. Both compounds can persist in the environment and exhibit toxicity toward a number of biological receptors. Recent reports of toxicological effects in wildlife, human cell cultures, and laboratory animals have heightened the interest in the occurrence of these biocide and related toxic effects. The present study aimed to summarize published environmental concentrations of biocides and contrast them with toxicity threshold values of susceptible organisms. Environmental occurrences and toxicity threshold values span more than six orders of magnitude in concentration. The highest biocide levels, measured in the mid parts‐per‐million range, were determined to occur in aquatic sediments and in municipal biosolids destined for land application. Crustacea and algae were identified as the most sensitive species, susceptible to adverse effects from biocide exposures in the parts‐per‐trillion range. An overlap of environmental concentrations and toxicity threshold values was noted for these more sensitive organisms, suggesting potential adverse ecological effects in aquatic environments. Affirmative evidence for this is lacking, however, since studies examining environmental occurrences of biocides vis‐à‐vis the health and diversity of aquatic species have not yet been conducted.     

Recovery of lotic periphyton communities after disturbance

Periphyton communities represent potentially excellent candidates for assessing the recovery of lotic ecosystems after disturbance. These communities are ubiquitous, relatively easy to sample and measure (in terms of total community biomass), have short generation times, and may influence the recovery rates of higher trophic levels. The first section of this article analyzes how site availability, species availability, and differential species performance influence periphyton successional dynamics. This background information provides a foundation for understanding how periphytic organisms respond after a disturbance. The second section of this article analyzes how periphyton communities respond to four different types of disturbance (flood events, desiccation, organic nutrient enrichment, and toxic metal exposure). Although data are limited, it is concluded that the fast growth rates and short generation times of periphytic organisms, coupled with their flexible life history strategies and good dispersal ability, allow lotic periphyton communities to recover relatively quickly after a disturbance. In addition, disturbance type and severity, local environmental conditions, and site-specific factors also will influence recovery rates. Future research needs include a better understanding of: (1) what periphyton property(ies) would serve as the best index of recovery; (2) whether or not the robustness of this index varies among different environments and different disturbances; (3) interactions between autotrophs and heterotrophs within the periphyton mat, particularly with respect to nutrient cycling; (4) competitive interactions among organisms; (5) functional redundancy of organisms; and (6) the influence of the riparian zone and channel geomorphology on periphyton recovery rates.     

Assessing the potential of native tree species for carbon sequestration forestry in Northeast China

Although the native forests of China are exceptionally diverse, only a small number of tree species have been widely utilized in forest plantations and reforestation efforts. We used dendrochronological sampling methods to assess the potential growth and carbon sequestration of native tree species in Jilin Province, Northeast China. Trees were sampled in and near the Changbaishan Biosphere Reserve, with samples encompassing old-growth, disturbed forest, and plantations. To approximate conditions for planted trees, sampling focused on trees with exposed crowns (dominant and co-dominant individuals). A log-linear relationship was found between diameter increment and tree diameter, with a linear decrease in increment with increasing local basal area; no significant differences in these patterns between plantations and natural stands were detected for two commonly planted species (Pinus koraiensis and Larix olgensis). A growth model that incorporates observed feedbacks with individual tree size and local basal area (in conjunction with allometric models for tree biomass), was used to project stand-level biomass increment. Predicted growth trajectories were then linked to the carbon process model InTEC to provide estimates of carbon sequestration potential. Results indicate substantial differences among species, and suggest that certain native hardwoods (in particular Fraxinus mandshurica and Phellodendron amurense), have high potential for use in carbon forestry applications. Increased use of native hardwoods in carbon forestry in China is likely to have additional benefits in terms of economic diversification and enhanced provision of "ecosystem services", including biodiversity protection.     

Two Concepts of Dignity for Humans and Non-Human Organisms in the Context of Genetic Engineering

The 1992 incorporation of an article by referendum in the SwissConstitution mandating that the federal government issue regulations onthe use of genetic material that take into account the dignity ofnonhuman organism raises philosophical questions about how we shouldunderstand what is meant by ``the dignity of nonhuman animals,' andabout what sort of moral demands arise from recognizing this dignitywith respect to their genetic engineering. The first step in determiningwhat is meant is to clarify the difference between dignity when appliedto humans and when applied to nonhumans. Several conceptions of humandignity should be rejected in favor of a fourth conception: the rightnot to be degraded. This right implies that those who have it have thecognitive capacities that are prerequisite for self-respect. In the caseof nonhuman organisms that lack this capacity, respecting their dignityrequires the recognition that their inherent value, which is tied totheir abilities to pursue their own good, be respected. This value isnot absolute, as it is in the case of humans, so it does not prohibitbreeding manipulations that make organisms more useful to humans. But itdoes restrict morally how sentient animals can be used. In regard togenetic engineering, this conception requires that animals be allowedthe uninhibited development of species specific functions, a positionshared by Holland and Attfield, as opposed to the Original Purposeconception proposed by Fox and the Integrity of the Genetic Make-upposition proposed by Rolston. The inherent value conception of dignity,as here defended, is what is meant in the Swiss Constitution article.     

Chemical residence time and hydrological conditions influence treatment of fipronil in vegetated aquatic mesocosms

Fipronil, a phenyl-pyrazole insecticide, is often used in rice (Oryza sativa L.) production agriculture, with elevated runoff concentrations and loads having potential toxicological effects on downstream aquatic environments. This study evaluated two species of aquatic plants-broadleaf cattail (Typha latifolia L.) and powdery alligator-flag (Thalia dealbata Fraser ex Roscoe)-placed in series against a nonvegetated mesocosm in reducing concentrations and loads of fipronil, and associated metabolites. Vegetation type and hydrological condition (inundated vs. dry) were treatment effects used for comparison. The vegetated mesocosms significantly reduced higher loads and concentrations of fipronil, fipronil sulfone, and sulfide in both inundated and dry hydrological conditions over nonvegetated nesocosms. Under inundation conditions, vegetated mesocosms reduced >50% of influent fipronil concentrations and betweeen 60 and 70% of fipronil loads, which was significantly higher than the dry conditions (10-32% concentration and load). These results show that agricultural management strategies usingephemeral aquatic zones, such as drainage ditches, can be optimized to couple chemical applications with vegetation presence and hydrology to facilitate the reduction in chemical waste loads entering downstream aquatic ecosystems. Such reduction is critical for use with fipronil, where negative impacts have been demonstrated with several nontarget species.     

Development of community of practice to support quantitative risk assessment for synthetic biology products: contaminant bioremediation and invasive carp control as cases

Synthetic biology has the potential for a broad array of applications. However, realization of this potential is challenged by the paucity of relevant data for conventional risk assessment protocols, a limitation due to to the relative nascence of the field, as well as the poorly characterized and prioritized hazard, exposure, and dose–response considerations associated with the development and use of synthetic biology-derived organisms. Where quantitative risk assessment approaches are necessarily to fulfill regulatory requirements for review of products containing genetically modified organisms, this paper reviews one potential avenue for early-stage quantitative risk assessment for biosafety considerations of synthetic biology organism deployment into the environment. Building from discussion from a March 2018 US Army Engineer Research and Development Center workshop on developing such quantitative risk assessment for synthetic biology, this paper reviews the findings and discussion of workshop participants. This paper concludes that, while synthetic biology risk assessment and governance will continue to refine and develop in the coming years, a quantitative framework that builds from existing practice is one potentially beneficial option for risk assessors that must contend with the technology’s limited hazard characterization or exposure assessment considerations in the near term.     

Maintaining the Conservation Value of Shifting Cultivation Landscapes Requires Spatially Explicit Interventions

Fallow vegetation within landscapes dominated by shifting cultivation represents a woody species pool of critical importance with considerable potential for biodiversity conservation. Here, through the analysis of factors that influence the early stages of fallow vegetation regrowth in two contrasting forest margin landscapes in Southern Cameroon, we assessed the impact of current trends of land use intensification and expansion of the cultivated areas, upon the conservation potential of shifting cultivation landscapes. We combined the analysis of plot and landscape scale factors and identified a complex set of variables that influence fallow regrowth processes in particular the characteristics of the agricultural matrix and the distance from forest. Overall we observed a decline in the fallow species pool, with composition becoming increasingly dominated by species adapted to recurrent disturbance. It is clear that without intervention and if present intensification trends continue, the potential of fallow vegetation to contribute to biodiversity conservation declines because of a reduced capacity, (1) to recover forest vegetation with anything like its original species composition, (2) to connect less disturbed forest patches for forest dependent organisms. Strategies to combat biodiversity loss, including promotion of agroforestry practices and the increase of old secondary forest cover, will need not only to operate at a landscape scale but also to be spatially explicit, reflecting the spatial pattern of species reservoirs and dispersal strategies and human usage across landscapes.     

Two concepts of dignity for humans and non-human organisms in the context of genetic engineering

The 1992 incorporation of an article by referendum in the Swiss Constitution mandating that the federal government issue regulations on the use of genetic material that take into account the dignity of nonhuman organism raises philosophical questions about how we should understand what is meant by “the dignity of nonhuman animals,” and about what sort of moral demands arise from recognizing this dignity with respect to their genetic engineering. The first step in determining what is meant is to clarify the difference between dignity when applied to humans and when applied to nonhumans. Several conceptions of human dignity should be rejected in favor of a fourth conception: the right not to be degraded. This right implies that those who have it have the cognitive capacities that are prerequisite for self-respect. In the case of nonhuman organisms that lack this capacity, respecting their dignity requires the recognition that their inherent value, which is tied to their abilities to pursue their own good, be respected. This value is not absolute, as it is in the case of humans, so it does not prohibit breeding manipulations that make organisms more useful to humans. But it does restrict morally how sentient animals can be used. In regard to genetic engineering, this conception requires that animals be allowed the uninhibited development of species specific functions, a position shared by Holland and Attfield, as opposed to the Original Purpose conception proposed by Fox and the Integrity of the Genetic Make-up position proposed by Rolston. The inherent value conception of dignity, as here defended, is what is meant in the Swiss Constitution article. This paper is a slightly revised version of a paper that had been published in German in 1998 (“Menschenwürde vs. Würde der Kreatur,” Freiburg i.Br.).     

ECOLOGICAL CONSEQUENCE ASSESSMENT: EFFECTS OF BIOENGINEERED ORGANISMS1

ABSTRACT: The introduction of genetically altered microorganisms into natural ecosystems presents fundamentally new problems in risk assessment and ecological effect evaluation. Novel microorganisms, produced by any of several new methods, have the ability to survive and reproduce in the environment. Since most of these organisms are bacteria, they have the potential to interfere with natural processes, displace natural populations, infect new hosts, move between ecosystems, and cause far-reaching ecological disturbanes. This paper reviews currently available methods in ecological research that might be used in evaluating the ecological effects of releasing genetically altered microorganisms. Both structural and functional evaluations are critically reviewed. Microcosm, mesocosm, and field tests should provide valuable predictions concerning the potential ecological impact of genetically altered organisms. Ecosystem assessments will also be useful in post-release studies such as those currently used to evaluate toxic impacts. The present problem does not require the development of new testing methods but rather the creation of adequate predictive models (both conceptual and systems-based) to predict the potential for adverse effect of genetically altered organisms.     

Investigating habitat value to inform contaminant remediation options: approach

Habitat valuation methods are most often developed and used to prioritize candidate lands for conservation. In this study the intent of habitat valuation was to inform the decision-making process for remediation of chemical contaminants on specific lands or surface water bodies. Methods were developed to summarize dimensions of habitat value for six representative aquatic and terrestrial contaminated sites at the East Tennessee Technology Park (ETTP) on the US Department of Energy Oak Ridge Reservation in Oak Ridge, TN, USA. Several general valuation metrics were developed for three broad categories: site use by groups of organisms, site rarity, and use value added from spatial context. Examples of use value metrics are taxa richness, a direct measure of number of species that inhabit an area, complexity of habitat structure, an indirect measure of potential number of species that may use the area, and land use designation, a measure of the length of time that the area will be available for use. Measures of rarity included presence of rare species or communities. Examples of metrics for habitat use value added from spatial context included similarity or complementarity of neighboring habitat patches and presence of habitat corridors. More specific metrics were developed for groups of organisms in contaminated streams, ponds, and terrestrial ecosystems. For each of these metrics, cutoff values for high, medium, and low habitat value were suggested, based on available information on distributions of organisms and landscape features, as well as habitat use information. A companion paper describes the implementation of these habitat valuation metrics and scoring criteria in the remedial investigation for ETTP.     

Clean production with membrane technology

 Membrane processes, because of unique, specialized, and cost-effective applications, have the potential of playing a significant role in preventing pollution from occurring in manufacturing plants. Opportunities are seen in resource recovery, species purification, and energy savings. Emerging technologies of membrane reactors that combine separation with reaction in one physical unit are important developments also. In this paper we discuss the scope of membrane technologies in industrial applications as well as hurdles that must be overcome. Received: 15 April 1998 / Accepted: 9 August 1998     

Herbaceous Covers to Control Tree Invasion in Rights-of-Way: Ecological Concepts and Applications

In northeastern America, thousands of kilometers of utility rights-of-way (ROWs) have to be managed to prevent the establishment of a tall vegetation cover that does not comply with safety and maintenance regulations. Recent decades have seen the emergence of ecologically based vegetation control strategies to reduce environmental impacts as well as maintenance costs. One such strategy is to take advantage of competitive herbaceous covers to limit tree invasion. This approach, however, as well as its fundamental underlying principles, has been little scrutinized. In this article, (1) we present the main ecological concepts supporting the use of a herbaceous cover to limit tree invasion, emphasizing naturally forested ecosystems of northeastern America. They include reported evidence of stable plant communities and an overview of potential underlying mechanisms of inhibition. (2) We then review field applications, specifically testing the ability of seeded herbaceous covers to control tree invasion in ROWs. (3) We discuss unresolved issues relevant to management and research. The available evidence suggests that seeding herbaceous covers in ROWs can help control tree invasion, but many issues still limit broad-scale applications. The various interactions that govern plant community dynamics are far from being fully understood, so selecting species still largely depends on an empirical approach. Patterns of resistance to tree invasion must be investigated over a wide range of spatial, historical, and environmental contexts to determine effective management and seeding practices that will lead to broad-scale applications. We suggest establishing communities rather than single dominant species and using as much as possible native species to limit risks of invasion.Published online     

Ornamental Plants as Invasive Aliens: Problems and Solutions in Kruger National Park,South Africa

The most widespread invasive alien plant species in South Africa’s Kruger National Park (KNP) were either introduced unintentionally along rivers and roads, or intentionally for use as ornamentals. We examine the spatial distribution of ornamental alien plants in KNP, look at the link between human population size, history, and species richness, and show how the distribution of particular species reflects the likely history of ornamental plantings. Results are used to assess whether past management actions have been appropriately directed. Two hundred and fifty-eight alien species have been recorded in the 36 tourist camps and staff villages. The number of staff housed in villages explains much of the diversity of cultivated alien plant species. Older camps also tend to have more ornamental alien plant species. However, the lack of a strong link between camp age and number of cultivated species suggests that ornamental plants have been widely spread around the KNP by humans. We also show that increased camp activity (either size or age) has led to more ornamental species, while, with the notable exception of Skukuza, camp activity has had a much smaller effect on the number of noncultivated species. Noncultivated species tend to be naturally dispersed, as opposed to directly spread by humans between camps. Past management prioritized certain species on the basis of their potential to invade KNP and on the prevailing national legislation. These species were removed manually and follow-up control was carried out. Once the priority species were deemed to be under control, less invasive species were targeted. All alien species were removed from vacated houses, regardless of the potential invasiveness of the species. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.