基因间隔序列(ITS)在细菌分类鉴定和种群分析中的应用

Use of 16S -23S intergenic transcribed spacer (ITS) variability, as a relatively new method, is becoming an important supplement to the molecular methods based on 16S rRNA for which has a fairly constant size and is not divergent enough to give good separation in close relationships. This paper summarizes the structures and characteristics of ITS regions that are extremely variable in copy number, length and sequence per genome. The ITS region can be amplified easily taking advantage of conserved nucleotide stretches at the 5′of the 16S and 3′of the 23S gene, and the amplicon can contain different amounts of the 16S rDNA by choosing primers at different conserved areas within this gene. These primers are listed and discussed for perfecting the methodology of ITS. Furthermore, some recent progresses on the taxonomy, identification and community analysis of bacteria by means of ITS in epidemiology, ecology and artificial environment are reviewed, as well, the virtues and limitations of that method are discussed. Fig 2, Tab 1, Ref 51     

Evaluation of soil microbial toxicity of waste foundry sand for soil-related reuse

The relationship between the chemical con- taminants and soil microbial toxicity of waste foundry sand （WFS） was investigated. Five different types of WFS from typical ferrous, aluminum, and steel foundries in China were examined for total metals, leachable metals, and organic contaminants. The soil microbial toxicity of each WFS was evaluated by measuring the dehydrogenase activity （DHA） of a blended soil and WFS mixture and then comparing it to that of unblended soil. The results show that the five WFSs had very different compositions of metal and organic contaminants and thus exhibited very different levels of soil microbial inhibition when blended with soil. For a given WFS blended with soil in the range of 10wt.%-50wt.% WFS, the DHA decreased almost linearly with increased blending ratio. Furthermore, for a given blending ratio, the WFSs with higher concentrations of metal and organic contaminants exhibited greater microbial toxicity. Correlation analysis shows that the relationship between ecotoxicity and metal and organic contaminants of WFSs can be described by an empirical logarithmic linear model. This model may be used to control WFS blending ratios in soil-related applications based on chemical analysis results to prevent significant inhibition of soil microbial activity.     

Diversity and vertical distributions of sediment bacteria in an urban river contaminated by nutrients and heavy metals

The aim of this study was to investigate the benthic bacterial communities in different depths of an urban river sediment accumulated with high concentrations of nutrients and metals. Vertical distributions of bacterial operational taxonomic units （OTUs） and chemical para- meters （nutrients： NH4＋, NO3, dissolved organic carbon, and acid volatile sulfur; metals： Fe, Zn, and Cu） were characterized in 30 cm sediment cores. The bacterial OTUs were measured using the terminal restriction fragment length polymorphism analysis. Biodiversity indexes and multivariate statistical analyses were used to characterize the spatial distributions of microbial diversity in response to the environmental parameters. Results showed that concentrations of the nutrients and metals in this river sediment were higher than those in similar studies. Furthermore, high microbial richness and diversity appeared in the sediment. The diversity did not vary obviously in the whole sediment profile. The change of the diversity indexes and the affiliations of the OTUs showed that the top layer had different bacterial community structure from deeper layers due to the hydrological disturbance and redox change in the surface sediment. The dominant bacterial OTUs ubiquitously existed in the deeper sediment layers （5-27 cm） corresponding to the distributions of the nutrients and metals. With much higher diversity than the dominant OTUs, the minor bacterial assemblages varied with depths, which might be affected by the sedimentation process and the environmental competition pressure.     

Abundance and distribution of ammonia-oxidizing archaea in Tibetan and Yunnan plateau agricultural soils of China

As low oxygen and high ultraviolet （UV） exposure might significantly affect the microbial existence in plateau, it could lead to a specialized microbial community. To determine the abundance and distribution of ammonia-oxidizing archaea （AOA） in agricultural soil of plateau, seven soil samples were collected respectively from farmlands in Tibet and Yunnan cultivating the wheat, highland-barley, and colza, which are located at altitudes of 3200-3800 m above sea level. Quantitative PCR （q-PCR） and clone library targeting on amoA gene were used to quantify the abundances of AOA and ammonia-oxidizing bacteria （AOB）, and characterize the community structures of AOA in the samples. The number of AOA cells （9.34 × 10^7-2.32× 10^8 g^-1 soil） was 3.86-21.84 times greater than that of AOB cells （6.91 × 10^6-1.24 × 10^8 g^-1 soil） in most of the samples, except a soil sample cultivating highland- barley with an AOA/AOB ratio of 0.90. Based Kendall＇s correlation coefficient, no remarkable correlation between AOA abundance and the environmental factor was observed. Additionally, the diversities of AOA community were affected by total nitrogen and organic matter concentration in soils, suggesting that AOA was probably sensitive to several environmental factors, and could adjust its community structure to adapt to the environmental variation while maintaining its abundance.     

Variation in humic and fulvic acids during thermal sludge treatment assessed by size fractionation,elementary analysis,and spectroscopic methods

Thermal pretreatment can be applied to sludge anaerobic digestion or dewatering. To analyze the variation in humic substances during thermal sludge treatment, sludge humic and fulvic acids were extracted before and after 30-min thermal treatment at 180℃, and then their contents, molecular weight distributions, elementary compositions, and spectral characteristics were compared. The results showed that the total contents of humic and fulvic acids in the sludge almost remained constant during thermal treatment, but 35% ofhumic and fulvic acids were dissolved from the sludge solids. Moreover, both humic and fulvic acids were partly decomposed and 32% of humic acids were converted to fulvic acids. The median value of the molecular weights of humic acids decreased from 81 to 41 kDa and that of fulvic acids decreased from 15 to 2 kDa. Besides the reduction in molecular size, the chemical structures of humic and fulvic acids also exhibited a slight change, i.e. some oxygen functional groups disappeared and aromatic structures increased after thermal sludge treatment.     

Towards a molecular understanding of the electronic metal-support interaction(EMSI) in heterogeneous catalysis

Tailoring the electronic metal-support interaction(EMSI) has attracted considerable interests as one of the most efficient approaches to improve both the activity and stability of metal catalysts in heterogeneous catalysis. In this viewpoint, we illustrate the methodology and relevant fundamentals on the disentanglement, characterization, and interpretation of EMSI. Under the choice of monometallic catalyst over inert support, a combination of optimal experiment design, multimodal techniques, in...     

Bioremediation of highly contaminated oilfield soil: Bioaugmentation for enhancing aromatic compounds removal

This study evaluated the effectiveness of different amendments--including a commercial NPK fertilizer, a humic substance （HS）, an organic industrial waste （NovoGro）, and a yeast-bacteria consortium--in the remediation of highly contaminated （up to 6% of total petroleum hydrocarbons） oilfield soils. The concentrations of hydrocarbon, soil toxicity, physicochemical properties of the soil, microbial population numbers, enzyme activities and microbial community structures were examined during the 90-d incubation. The results showed that the greatest degradation of total petroleum hydro- carbons （TPH） was observed with the biostimulation using mixture of NPK, HS and NovoGro, a treatment scheme that enhanced both dehydrogenase and lipase activities in soil. Introduction of exogenous hydrocarbon-degrading bacteria （in addition to biostimulation with NPK, HS and NovoGro） had negligible effect on the removal of TPH, which was likely due to the competition between exogenous and autochthonous microorganisms. None- theless, the addition of exogenous yeast-bacteria consor- tium significantly enhanced the removal of the aromatic fraction of the petroleum hydrocarbons, thus detoxifying the soil. The effect of bioaugmentation on the removal of more recalcitrant petroleum hydrocarbon fraction was likely due to the synergistic effect of bacteria and fungi.     

Performance of a hybrid anaerobic-contact oxidation biofilm baffled reactor for the treatment of decentralized molasses wastewater

A novel hybrid anaerobic-contact oxidation biofilm baffled reactor （HAOBR） was developed to simultaneously remove nitrogenous and carbonaceous organic pollutants from decentralized molasses wastewater in the study. The study was based on the inoculation of anaerobic granule sludge in anaerobic compartments and the installation of combination filler in aerobic compartments. The performance of reactor system was studied regarding the hydraulic retention time （HRT）, microbial characteristics and the gas water ratio （GWR）. When the HRT was 24h and the GWR was 20：1, total ammonia and chemical oxygen demand （COD） of the effluent were reduced by 99% and 91.8%, respectively. The reactor performed stably for treating decentralized molasses wastewater. The good performance of the reactor can be attributed to the high resistance of COD and hydraulic shock loads. In addition, the high solid retention time of contact oxidation biofilm contributed to stable performance of the reactor.     

Effects of bicarbonate and cathode potential on hydrogen production in a biocathode electrolysis cell

A biocathode with microbial catalyst in place of a noble metal was successfully developed for hydrogen evolution in a microbial electrolysis cell （MEC）. The strategy for fast biocathode cultivation was demonstrated. An exoelectrogenic reaction was initially extended with an H2-full atmosphere to enrich Ha-utilizing bacteria in a MEC bioanode. This bioanode was then inversely polarized with an applied voltage in a half-cell to enrich the hydrogen-evolving biocathode. The electrocatalytic hydrogen evolution reaction （HER） kinetics of the biocathode MEC could be enhanced by increasing the bicarbonate buffer concentration from 0.05 mol·L-1 to 0.5 mol· L-1 and/or by decreasing the cathode potential from -0.9 V to - 1.3 V vs. a saturated calomel electrode （SCE）. Within the tested potential region in this study, the HER rate of the biocathode MEC was primarily influenced by the microbial catalytic capability. In addition, increasing bicarbonate concentration enhances the electric migration rate of proton carriers. As a consequence, more mass H＋ can be released to accelerate the biocathode-catalyzed HER rate. A hydrogen production rate of 8.44 m3. m 3. d1 with a current density of 951.6 A. m-3 was obtained using the biocathode MEC under a cathode potential of - 1.3 V vs. SCE and 0.4 mol· L-1 bicarbonate. This study provided information on the optimization of hydrogen production in biocathode MEC and expanded the practical applications thereof.     

石油污染土壤及地下水的生物修复进展

This paper presents a review with 41 references on bioremediation of oil or oil products contaminated soil and groundwater in the past several years．Many aspects are discussed,such as the types of remedied soils,the degraded pollutants,separation and selection of strains for oil degradation,effects of the added nutrition or other substances,and some available techniques of bioremediation.     

杨树抗旱性研究进展

The drought resistance of woody plants, in particular, Populus, was reviewed in this paper. Studies about drought resistance of Populus mostly focused on changes in growth properties, physiological adaptation and biochemical aspects, but a few on molecular biology. The indexes of drought adaptation and productivity were analyzed and these indexes could be employed to identify drought resistance of woody plants. Combination of such different approaches will, hopefully, give us a more complete understanding of the various regulatory mechanisms in trees than what we may have today. With development of the molecular biology of woody plants, the sluties on stress resistance of Populus which was regarded as a model plant, are summarised. Ref 96     

Responses of bacterial strains isolated from drinking water environments to N-acyl-L-homoserine lactones and their analogs during biofilm formation

Often as a result ofbiofilm formation, drinking water distribution systems （DWDS） are regularly faced with the problem of microbial contamination. Quorum sensing （QS） systems play a marked role in the regulation of microbial biofilm formation; thus, inhibition of QS systems may provide a promising approach to biofilm formation control in DWDS. In the present study, 22 bacterial strains were isolated from drinking water-related environments. The following properties of the strains were investigated： bacterial biofilm formation capacity, QS signal molecule N-acyl-L-homoserine lactones （AHLs） production ability, and responses to AHLs and AHL analogs, 3-chloro-4-（dichloromethyl）-5-hydroxy-2（5H）- furanone （MX） and 2（5H）-furanone. Four AHLs were added to developed biofilms at dosages ranging from 0.1 nmol.L J to 100nmol.L1. As a result, the biofilm growth of more than 1/4 of the isolates, which included AHL producers and non-producers, were significantly promoted. Further, the biofilm biomasses were closely associated with respective AHLs concentrations. These results provided evidence to support the idea that AHLs play a definitive role in biofilm formation in many of the studied bacteria. Meanwhile, two AHLs analogs demon- strated unexpectedly minimal negative effects on biofilm formation. This suggested that, in order to find an applicable QS inhibition approach for biofilm control in DWDS, the testing and analysis of more analogs is needed.     

Removal of pharmaceutical and personal care products by sequential ultraviolet and ozonation process in a full-scale wastewater treatment plant

The application of appropriate advanced treat- ment process in the municipal wastewater treatment plants （WWTPs） has become an important issue considering the elimination of emerging contaminants, such as pharma- ceutical and personal care products （PPCPs）. In the present study, the removal of 13 PPCPs belonging to different therapeutic classes by the sequential ultraviolet （UV） and ozonation process in a full-scale WWTP in Beijing was investigated over the course of ten months. Most of the target PPCPs were effectively removed, and the median removal efficiencies of individual PPCPs, ranging from -13% to 89%, were dependent on their reaction rate constants with molecular ozone. Noticeable fluctuation in the removal efficiencies of the same PPCPs was observed in different sampling campaigns. Nevertheless, the sequential UV and ozonation process still made a significant contribution to the total elimination of most PPCPs in the full-scale WWTP, by compensating for the poor or fluctuant removal performance of PPCPs by biologic treatment process.     

Scaling up a novel denitrifying microbial fuel cell with an oxic-anoxic two stage biocathode

A scaled up microbial fuel cell （MFC） of a 50 L volume was set up with an oxic-anoxic two-stage biocathode and activated semicoke packed electrodes to achieve simultaneous power generation and nitrogen and organic matter removals. An average maximum power density of 43.1 W·m^-3 was obtained in batch operating mode. By adjusting the two extemal resistances, the denitrification in the A-MFC and power production in the O-MFC could be enhanced. In continuous mode, when the hydraulic retention times were set at 6 h, 8 h and 12 h, the removal efficiencies of COD, NHf-N and total nitrogen （TN） were higher than 95%, 97%, and 84%, respectively. Meanwhile the removal loads for COD, NH4^＋-N and TN were10, 0.37 and 0.4 kg·（m^3·d）^-1, respectively.     

Bacterial community structure in waterlogged bamboo slips excavated from the Laoguanshan Han Dynasty Tomb of Chengdu北大核心CSCD

To investigate the bacterial community structure features of soak solutions used to preserve bamboo slips that were excavated from Han dynasty tomb located in Laoguanshan of Chengdu and to reveal the diversity of bacteria in these soak solutions, PCR-DGGE was employed. Subsequently, the major DGGE bands were excised and sequenced to analyze the phylogeny of bacteria. The richness (S), Shannon-Wiener index (H), and Simpson index (D) of deionized water (0#) without the soaked bamboo slips were higher than those of the other samples. Among the bamboo slip soak solution samples, there were significant differences in these indicators; the bacterial genetic diversity of sample 121# was the highest and that of sample 1# was the lowest. Principal Component Analysis (PCA) showed that there were comparatively large differences among the samples, and the similarity between sample 1# and others was the lowest. Based on the sequence analysis, the major community of bacteria in soak solution were belonged to Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Firmicutes, Bacteroidetes, and Actinobacteria, including Cupriavidus, Aquabacterium, Comamonas, Albidiferax, Hyphomicrobiaceae, Azospirillum, Nevskia, Streptococcus, Staphylococcus, Sediminibacterium, and Propionibacterium, among which Cupriavidus of the β-Proteobacteria class was detected in all samples. The bacterial community structure of the soak solutions that were collected from different bamboo slips was quite complex and significantly different. The analysis of the main bacterial community revealed the potential bacteria species that may trigger the damage in bamboo slips; the result provided a reference to prevent waterlogged bamboo slips from microbial diseases in the future. © 2018 Science Press. All rights reserved.     

Facile synthesis of hydrochar-supported catalysts from glucose and its catalytic activity towards the production of functional amines

Since the utilization of abundant biomass to develop advanced materials has become an utmost priority in recent years, we developed two sustainable routes(i.e., the impregnation method and the one-pot synthesis) to prepare the hydrochar-supported catalysts and tested its catalytic performance on the reductive amination. Several techniques, such as TEM, XRD and XPS, were adopted to characterize the structural and catalytic features of samples. Results indicated that the impregnation method favors...     

Microbial fuel cell with three-dimensional electrodes for domestic wastewater treatment and electricity generation北大核心CSCD

A single chamber microbial fuel cell (MFC) with three-dimensional electrodes packed bed carbon felts was developed to treat domestic wastewater while simultaneously generating electricity. The influence of batch and continuous operation mode on treatment effectiveness and electricity production of the MFC was investigated to provide a reference for the application of the MFC. The MFC with a total working volume of 1 440 mL was operated in the fed-batch mode for 5 d repeatedly three times, and then shifted to the continuous mode. During the testing of the continuous mode, wastewater was continuously pumped into the anode compartment at a flow rate of approximately 0.2 mL/min, resulting in a hydraulic retention time of 5 d. During the batch test, the MFC obtained 91.1% chemical oxygen demand (COD) and 98.2% NH4 +-N removal, which accorded with the first criteria specified in the discharge standard of pollutants for municipal wastewater treatment plants in China (GB18918-2002). A maximum power density of 27.88 mW/m3 was achieved at a 51 Ω external resistor. During the continuous test, the COD removal efficiencies ranged from 83.2% to 97.4%. The concentration of NH4 +-N gradually decreased within 5 d and was then maintained below 9.45 mg/L, thus an enhanced removal performance of NH4 +-N was acquired. However, a low removal efficiency of total nitrogen was observed owing to the accumulation of NO3 --N in the effluent since day 11. Additionally, the MFC continually generated electricity with a maximum power density of 582.5 mW/m3 and average output voltage of 0.087 7 V during the stable period in the continuous operation mode. Moreover, 16S rRNA gene high-throughput sequencing showed that Thauera sp., Saprospiraceae-UN sp., and OPB56-UN sp. were identified as dominant populations. The results suggested that the organic matter associated with power generation was constantly utilized by the microorganisms in the reactor, which caused an excellent electricity generation performance during the continuous test. Therefore, the continuous operation mode could improve the low output voltage phenomenon in the MFC. Thauera sp., as a type of nitrate-reducing bacteria, was enriched in the autotrophic denitrifying microbial communities; therefore, bio-enrichment with denitrifying bacteria such as Thauera sp. could decrease the concentration of NO3 --N in the effluent during the continuous operation mode, which is expected to be an innovation for improvement of wastewater treatment. © 2018 Science Press. All rights reserved.