Reconciling empirical ecology with neutral community models

Neutral community models embody the idea that individuals are ecologically equivalent, having equal fitness over all environmental conditions, and describe how the spatial dynamics and speciation of such individuals can produce a wide range of patterns of distribution, diversity, and abundance. Neutral models have been controversial, provoking a rush of tests and comments. The debate has been spurred by the suggestion that we should test mechanisms. However, the mechanisms and the spatial scales of interest have never clearly been described, and consequently, the tests have often been only peripherally relevant. At least two mechanisms are present in spatially structured neutral models. Dispersal limitation causes clumping of a species, which increases the strength of intraspecific competition and reduces the strength of interspecific competition. This may prolong coexistence and enhance local and regional diversity. Speciation is present in some neutral models and gives a donor-controlled input of new species, many of which remain rare or are short lived, but which directly add to species diversity. Spatial scale is an important consideration in neutral models. Ecological equivalence and equal fitness have implicit spatial scales because dispersal limitation and its emergent effects operate at population levels, and populations and communities are defined at a chosen spatial scale in recent neutral models; equality is measured relative to a metacommunity, and this necessitates defining the spatial scale of that metacommunity. Furthermore, dispersal has its own scales. Thorough empirical tests of neutral models will require both tests of mechanisms and pattern-producing ability, and will involve coupling theoretical models and experiments.     

Feeding ecology and niche segregation in oceanic top predators off eastern Australia

We examined the feeding ecology and niche segregation of the ten most abundant fish species caught by longline operations off eastern Australia between 1992 and 2006. Diets of 3,562 individuals were examined. Hook timer data were collected from a further 328 fish to examine feeding behaviour in relation to depth and time of day. Prey biomass was significantly related to predator species, predator length and year and latitude of capture. Although the fish examined fed on a mix of fish, squid and crustacea, fish dominated the diet of all species except small albacore (Thunnus alalunga) which fed mainly on crustacea and large swordfish (Xiphias gladius) and albacore which fed mainly on squid. Cannibalism was observed in lancetfish (Alepisaurus spp.). Multidimensional scaling identified three species groups based on their diet composition. One group consisted of yellowfin tuna (T. albacares), striped marlin (Tetrapturus audax) and dolphinfish (Coryphaena hippurus); a second group consisted of bigeye tuna (T. obesus), swordfish and albacore; and a third consisted of southern bluefin tuna (T. maccoyii) and blue shark (Prionace glauca). Of note was the separation of mako shark (Isurus oxyrhynchus) and lancetfish from all other predators. Prey length generally increased with increasing predator length although even large predators fed on a wide range of prey lengths including very small prey. Overall, differences in prey type and size, feeding times and depths were noted across the range of species examined to the extent that predators with overlapping prey, either in type or size, fed at different times of the diel period or at different depths. Taken together these data provide evidence for feeding niche segregation across the range of oceanic top predators examined.     

Paleobiology, community ecology, and scales of ecological pattern

The fossil record provides a wealth of data on the role of regional processes and historical events in shaping biological communities over a variety of time scales. The Quaternary record with its evidence of repeated climatic change shows that both terrestrial and marine species shifted independently rather than as cohesive assemblages over scales of thousands of years. Larger scale patterns also show a strong individualistic component to taxon dynamics; assemblage stability, when it occurs, is difficult to separate from shared responses to low rates of environmental change. Nevertheless, the fossil record does suggest that some biotic interactions influence large-scale ecological and evolutionary patterns, albeit in more diffuse and protracted fashions than those generally studied by community ecologists. These include: (1) the resistance by incumbents to the establishment of new or invading taxa, with episodes of explosive diversification often appearing contingent on the removal of incumbents at extinction events; (2) steady states of within-habitat and global diversity at longer time scales (10(7)-l0(8) yr), despite enormous turnover of taxa; and (3) morphological and biogeographic responses to increased intensities of predation and substratum disturbance over similarly long time scales. The behavior of species and communities over the array of temporal and spatial scales in the fossil record takes on additional significance for framing conservation strategies, and for understanding recovery of species, lineages, and communities from environmental changes.     

土壤动物群落生态学与土壤微生态环境的关系

主要综述了国内外蚯蚓种群、捕食性线虫、蚂蚁、跳虫、螨类等土壤动物与土壤理化性质的关系,以及蚯蚓、白蚁、蜗牛、线虫等土壤动物与土壤酶活性的相关性研究;提出了该学科今后的研究趋势。该学科未来要融合土壤动物和整个农林生态系统的研究为一体,把农林的土壤动物群落生态学及其与土壤微生态环境关系结合起来,耦合土壤动物与植物根系-根际微生态环境,链接农林土壤动物与土壤健康及其害虫生态调控,分析探究它们内在的联系和机制,加强立地调控措施,为森林健康和土壤健康提供科学基础资料。     

长江口南北支浮游动物群落生态学研究

长江口特殊的生态环境使得浮游动物的种类组成、密度和时空分布等生态特征有别于其它水体。2005年秋季(丰水期)和2006年春季(枯水期)对长江口南北支浮游动物进行了2个航次的调查,沿南北支由西向东设立3个采样断面共20个采样点。共采集到浮游动物227种,其中轮虫65种,原生动物107种,枝角类15种,桡足类40种。优势种包括龟甲轮虫(Keratella)、刺簇多肢轮虫(Polyarthra trigla)、萼花臂尾轮虫(Brachionus calyciflorus)、砂壳虫(Difflugia)、表壳虫(Arcella)、砂壳纤毛虫(Tintinnid)、中华哲水蚤(Calanus sinicus)、汤匙华哲水蚤(Sinocalanus dorrii)、广布中剑水蚤(Mesocyclops leuckarti)、象鼻溞(Bosmina)等。文章对南北两支浮游动物的种类组成和结构进行了比较,南支浮游动物的种类、数量及生物多样都高于北支,南北两支的浮游动物群落相似度很低。南北两支水域环境的不同造成其浮游动物群落结构的较大差异,文章分析了环境因子与浮游动物群落结构的相关性,其中水温是重要的影响因素,水温的季节性决定...     

长江口南北支浮游动物群落生态学研究

长江口特殊的生态环境使得浮游动物的种类组成、密度和时空分布等生态特征有别于其它水体。2005年秋季（丰水期）和2006年春季（枯水期）对长江口南北支浮游动物进行了2个航次的调查,沿南北支由西向东设立3个采样断面共20个采样点。共采集到浮游动物227种,其中轮虫65种,原生动物107种,枝角类15种,桡足类40种。优势种包括龟甲轮虫（Keratella）、刺簇多肢轮虫（Polyarthra trigla）、萼花臂尾轮虫（Brachionus calyciflorus）、砂壳虫（Difflugia）、表壳虫（Arcella）、砂壳纤毛虫（Tintinnid）、中华哲水蚤（Calanus sinicus）、汤匙华哲水蚤（Sinocalanus dorrii）、广布中剑水蚤（Mesocyclops leuckarti）、象鼻溞（Bosmina）等。文章对南北两支浮游动物的种类组成和结构进行了比较,南支浮游动物的种类、数量及生物多样都高于北支,南北两支的浮游动物群落相似度很低。南北两支水域环境的不同造成其浮游动物群落结构的较大差异,文章分析了环境因子与浮游动物群落结构的相关性,其中水温是重要的影响因素,水温的季节性决定了浮游动物在时间分布上的变化。盐度对浮游动物群落结构的影响主要决定了其物种生态类型及空间分布。从整体上看,南北支主要受长江径流控制,浮游动物的种类组成以淡水种为主,咸水种在断面3出现较多。     

Comparative foraging ecology and ecological niche of a superabundant tropical seabird: the sooty tern Sterna fuscata in the southwest Indian Ocean

Over 6-million pairs of sooty terns Sterna fuscata breed once a year in the southwest Indian Ocean, mostly on three islands of the Mozambique Channel (Europa, Juan de Nova and Glorieuses) and in the Seychelles region. Seasonal reproduction in either winter or summer is the dominant strategy in the area, but non-seasonal reproduction also occurred in some places like at Glorieuses Archipelago. The feeding ecology of the sooty tern was investigated during the breeding seasons to determine whether terns showed significant differences in their trophic ecology between locations. Regurgitations were analyzed to describe the diet of individuals when breeding, and stable isotopes and mercury concentrations were used to temporally integrate over the medium-term of the trophic ecology of both adults and chicks. Overall, the diet was composed of fish, flying squid and fish larvae in different proportions. At Europa and Aride in the Seychelles, where winter reproduction occurs, large epipelagic prey like flying fish or squid dominated the diet. At Juan de Nova, sooty terns reproduce in summer and rely mostly on fish larvae. At Glorieuses (non-seasonal breeding), the diet was intermediate with fish larvae and flying squid being important prey items. The stable-carbon and nitrogen isotope values in blood confirm the differences observed in dietary analysis, and demonstrate different feeding strategies between colonies. δ¹³C values of feathers showed spatial segregation between birds from the Mozambique Channel and the Seychelles region. Terns from the Seychelles had also higher δ¹⁵N values. Feather δ¹³C values also suggest a significant shift from summer to wintering habitat for birds from Juan de Nova. This study emphasizes the high phenotypic plasticity of the species, which may explain its numerical dominance in all tropical waters of the World’s Ocean.     

Estimating the complexity of bird song by using capture-recapture approaches from community ecology

Repertoire size, the number of unique song or syllable types in the repertoire, is a widely used measure of song complexity in birds, but it is difficult to calculate this exactly in species with large repertoires. A new method of repertoire size estimation applies species richness estimation procedures from community ecology, but such capture-recapture approaches have not been much tested. Here, we establish standardized sampling schemes and estimation procedures using capture-recapture models for syllable repertoires from 18 bird species, and suggest how these may be used to tackle problems of repertoire estimation. Different models, with different assumptions regarding the heterogeneity of the use of syllable types, performed best for different species with different song organizations. For most species, models assuming heterogeneous probability of occurrence of syllables (so-called detection probability) were selected due to the presence of both rare and frequent syllables. Capture-recapture estimates of syllable repertoire size from our small sample did not differ significantly from previous estimates using larger samples of count data. However, the enumeration of syllables in 15 songs yielded significantly lower estimates than previous reports. Hence, heterogeneity in detection probability of syllables should be addressed when estimating repertoire size. This is neglected using simple enumeration procedures, but is taken into account when repertoire size is estimated by appropriate capture-recapture models adjusted for species-specific song organization characteristics. We suggest that such approaches, in combination with standardized sampling, should be applied in species with potentially large repertoire size. On the other hand, in species with small repertoire size and homogenous syllable usage, enumerations may be satisfactory. Although researchers often use repertoire size as a measure of song complexity, listeners to songs are unlikely to count entire repertoires and they may rely on other cues, such as syllable detection probability.Communicated by A. Cockburn     

Modeling and simulation study of the stoichiometric niche space and niche overlap based on the copula method

Environmental and Ecological Statistics - To qualify niche space and niche overlap, the current methods are based on a strict assumption of the normal distribution and restrict dependence to the...     

Feeding ecology of five fishes from the mid-slope micronekton community off southern Tasmania, Australia

We examine the feeding ecology of characteristic micronekton species inhabiting the mid-slope region (~700 to 1,500 m depths) off southern Tasmania. Five fishes, Diaphus danae, Hygophum hanseni, Lampanyctus australis (Myctophidae), Phosichthys argenteus (Phosichthyidae) and Chauliodus sloani (Chauliodontidae), were sampled by depth-stratified midwater trawling on a diel and seasonal basis. Overall, 74 prey taxa were identified from 2,132 stomachs. Euphausiids (mostly Euphausia spinifera and E. similis) and calanoid copepods (mostly Pleuromamma species) were the main prey of the three myctophids; P. argenteus ate fishes and decapods in addition to the euphausiids, while C. sloani ate only fishes. Copepods were less important in the diets of larger D. danae, L. australis and P. argenteus and were replaced by euphausiids in the myctophids and by fishes in P. argenteus. In autumn, when euphausiid biomass increased six-fold, all three myctophids and P. argenteus fed most intensively and consumed a high proportion of euphausiids. The three myctophids appeared to feed nocturnally. Differences in the timing and duration of feeding corresponded to differences in their spatio-temporal overlap with key prey. Daily rations of H. hanseni (1.93% dry-weight biomass) and L. australis (1.43%), estimated from data on stomach fullness, were typical for temperate myctophids and higher than that of the non-migratory P. argenteus (0.43%). The vertical flux of near-surface plankton production to the mesopelagic food web is based primarily on diel feeding in the upper water column (<500 m) rather than consumption of species that migrate seasonally into the deeper mesopelagic zone. Because species such as P. argenteus and C. sloani feed above the third trophic level, their predators, including the commercially important orange roughy, are feeding between levels four and five.     

The probabilistic niche model reveals substantial variation in the niche structure of empirical food webs

The structure of food webs, complex networks of interspecies feeding interactions, plays a crucial role in ecosystem resilience and function, and understanding food web structure remains a central problem in ecology. Previous studies have shown that key features of empirical food webs can be reproduced by low-dimensional "niche" models. Here we examine the form and variability of food web niche structure by fitting a probabilistic niche model to 37 empirical food webs, a much larger number of food webs than used in previous studies. The model relaxes previous assumptions about parameter distributions and hierarchy and returns parameter estimates for each species in each web. The model significantly outperforms previous niche model variants and also performs well for several webs where a body-size-based niche model performs poorly, implying that traits other than body size are important in structuring these webs' niche space. Parameter estimates frequently violate previous models' assumptions: in 19 of 37 webs, parameter values are not significantly hierarchical, 32 of 37 webs have nonuniform niche value distributions, and 15 of 37 webs lack a correlation between niche width and niche position. Extending the model to a two-dimensional niche space yields networks with a mixture of one- and two-dimensional niches and provides a significantly better fit for webs with a large number of species and links. These results confirm that food webs are strongly niche-structured but reveal substantial variation in the form of the niche structuring, a result with fundamental implications for ecosystem resilience and function.     

On the ecology of a North Adriatic benthic community: Distribution,standing crop and composition of the macrobenthos

The boundaries as well as the macro-epibenthic biomass distribution and composition of a North Adriatic benthic community, dominated by the brittle star Ophiothrix quinquemaculata (D.Ch.), the sponges Reniera ssp., and the ascidians Microcosmus ssp. were determined. Transects totalling more than 80 km (i.e., a recorded area of approximately 150 000 m²) were taken by means of a combined TV- and photocamera sled. The observations, TV-recordings, and photos, together with 392 diver-collected quantitative samples were evaluated. The biomass values were used to establish isobenths. Within the community, the mean biomass, measured as wet weight, amounted to 370 (±73) g/m² with maxima of more than 1000 g/m². 64% of the biomass was due to the designating group Ophiothrix-Reniera-Micrcosmus, 87.5% were represented by filter- and suspension-feeding species alone. The mean biomass in the peripheral areas was evaluated at 166 (±62) g/m². Biomass distribution and composition is examined, and the ecological function and meaning of the observed patterns is discussed.This investigation was carried out within the frame of a joint programme between the Lehrkanzel für Meeresbiologie, University of Vienna, and the Marine Biological Station, Portoroz, University of Ljubljana.     

Ichthyofauna of seagrass meadows along the Caribbean coast of Panamá and in the Gulf of Mexico: Composition,structure and community ecology

Collections of fishes from seagrass meadows along the coast of the Republic of Panamá and the Canal Zone during 1974–1975 revealed that juveniles of reefassociated predators are common in this habitat. There are also important diurnal changes in species composition: members of the families Pomadasyidae, Lutjanidae, Sciaenidae, Apogonidae and Muraenidae were noticeably more abundant in the seagrass meadows at night. Although there were significant differences in species composition and abundance among sampling sites, seasonal differences within sites appeared to be insignificant. The ichthyofauna of the Panamanian seagrass beds is significantly richer than that of similar habitats which have been studied in the Gulf of Mexico. This difference in species richness appears to be due in part to the influence of nearby coral reefs, which add an additional structural dimension to the habitat.     

Aspects of the community ecology of deep-sea,benthopelagic plankton,with special attention to gymnopleid copepods

Benthopelagic plankton was collected 10 to 100 m above the bottom of the deep sea (1100 to 3200 m) with an opening-closing net. Five samples were taken from the San Diego Trough, 2 from the eastern tropical Pacific and 2 from the northeast Atlantic. Roughly 80% of the individual organisms collected were copepods; the next most abundant groups were usually isopods, ostracods, and chaetognaths. Within the depth range studied, absolute abundances of most animal groups decreased with depth, but relative abundances (%) did not change. Of over 100 species of adult gymnopleid copepods collected, a few species were abundant, but most were rare. Copepod exoskeletons were more abundant than living copepods. For the gymnopleids, similarities among the 3 geographical regions were strong at the family and genus level but weak at the species level. Species that were widely distributed horizontally tended to occupy different positions (in terms of rank order of abundance) in each community. Gut content analysis indicated that the most abundant gymnopleids were generalized particle feeders. However, size-frequency distributions provided indirect evidence for niche separation. The deep-sea benthopelagic plankton was divisible into a truly planktonic component and a bottom-associated component. Abundances of some copepods changed relative to distance off the bottom. Several copepods and other animals, previously described as epibenthic or bottom-associated, were collected more that 10 m above the bottom and thus appeared to move freely between the bottom and lower water column.     

Short- and long-term consistency in the foraging niche of wandering albatrosses

The wandering albatross (Diomedea exulans) is regarded as a generalist predator, but can it be consistent in its foraging niche at an individual level? This study tested short- and long-term consistency in the foraging niche in terms of habitat use, trophic level and, by inference, prey selection. Fieldwork was carried out at Bird Island, South Georgia, in May–October 2009, during the chick-rearing period. Blood (plasma and cells) and feathers for stable isotope analyses (δ¹³C and δ¹⁵N) were sampled from 35 adults on their return from a foraging trip during which they carried stomach temperature, activity and global positioning system loggers. Results suggest short-term consistency in foraging niche in relation to both oceanic water mass and trophic level, and long-term consistency in use of habitat. Consistent differences between individuals partly reflected sex-specific habitat preferences. The proportion of consistent individuals (i.e., with a narrow foraging niche) was estimated at c. 40?% for short-term habitat and trophic level (prey) preferences and 29?% for longer-term habitat preference, suggesting this is an important characteristic of this population and potentially of pelagic seabirds in general. Foraging consistency was not related to body condition or level of breeding experience; instead, it may reduce intraspecific competition.     

Coexistence of intraguild predators and prey in resource-rich environments

The prevalence of intraguild predation (IGP) in productive environments has long puzzled ecologists. Theory predicts the exclusion of intraguild prey from such environments, but data consistently defy this expectation. This suggests that coexistence mechanisms at high resource productivity may differ from those at lower productivity. Here I present a mathematical model that investigates multiple coexistence mechanisms. I incorporate two biological features widely observed in IGP communities: intraspecific interference via cannibalism or superparasitism, and temporal refuges arising from differential sensitivities to abiotic variation. I develop predictions based on three aspects of the IG prey-IG predator interaction: mutual invasibility, transient dynamics, and long-term abundances. These predictions specify the conditions under which coexistence mechanisms reinforce vs. deter one another: when a competition-IGP trade-off allows coexistence at intermediate productivity a temporal refuge for the intraguild prey always allows coexistence at high productivity, but intraspecific interference does so only at a net fitness cost to the intraguild predator. Intraspecific interference that benefits the intraguild predator not only reduces tradeoff-mediated coexistence at intermediate productivity, but also undermines the refuge's coexistence-enhancing effect at high productivity. Different mechanism combinations yield characteristic signatures in time series data during transient dynamics. By judicious measurement of parameters and examining time series for critical signatures, one can elucidate the mechanisms that allow IGP to prevail in resource-rich environments.     

Coexistence between People and Elephants in African Savannas

Abstract: The decline in the range and numbers of elephants as a result of expanding human activity in Africa is recognized as one of the continent's more serious conservation problems. Understanding the relationship between human settlement patterns and elephant abundance is fundamental to predicting the viability of elephant populations. The prevailing model of human-elephant interaction predicts a negative linear relationship between rising human density and declining elephant density at a coarse (national or subcontinental) scale. Using observed elephant densities and human population data, we tested this prediction in a study area of 15,000 km² in northwestern Zimbabwe. The results did not fit a linear model. Elephant and human coexistence occurs at various levels of human density, up to a threshold of human density beyond which elephant populations disappear. This threshold seems to be related to a particular stage in the process of agriculturally transformed land becoming spatially dominant over the natural woodland that constitutes elephant habitat. Within the contexts of conservation and sustainable development in African savannas, investigating spatial relationships between elephant and human abundance should be a priority topic for future research.     

国际互联网上的生态环境资源

Intemet已成为最大的信息载体和传输工具，由于Intemet上生态环境资源具有分布广、数量巨大、高动态的特点，熟悉网上信息的检索是有效开展科研的基本要求。文章介绍互联网上生态环境资源的检索方法，并对目前互联网上所存在的生态环境资源分布状况及其相关站点进行了介绍。     

The models of niche and their application

Having studied the definitions of niche proposed by different ecologists, I have proposed a quantitative method of niche which can be applied to plants. Accordingly, the niche of an operational taxonomic unit (OTU) has been described by a mapping from its environmental set to the unit interval [0, 1], which enables a model of niche to be mathematically operational. The concepts of fundamental niche, realized niche, time niche, etc., may be described by using mathematical models related to each other, and the geometrical relationships between them can be revealed by a multi-dimensional surface. The uni-factor models are built upon the condition that the other factors are optimal for OTU, which are particular cases of the multi-factor models. The establishment of the quantitative relationship between these two kinds of models makes it possible to find out the plants' fundamental niche by doing uni-factor experiments. This may simplify the experiments in which the parameters in a practically applied model are to be estimated. The niche index introduced in this paper is related to average level and aftereffect of plant responses to the effects of its environment (i.e. “inertia”), thus it should be the basis of the simulation of plant seed yield and of its environmental evaluation. Accordingly, models of niche index, of plant seed yield, of plant growth and of environmental evaluation have been built which can be applied to the environmental evaluation or the prediction and management of plant (crop) production, etc.As an example of application, the models of wheat yield and its environmental assessment have been established and practically tested. The results of testing the model of wheat yield showed that the relative errors are 8% and 7.2%, respectively, in 1984 and 1986. The results of the environmental assessment of wheat reveal the fact that the insufficiency of the soil moisture at the 2th and 3th stages is the main restriction of the production of the wheat in Dinxi, Gansu Province, China.     

试论生态学的一门分支学科:环境耐性生态学

针对目前对生态学的学科分支情况,及生态学的发展趋势和环境灾害的启示,提出了"环境耐性生态学"这一生态学的分支学科.初步明确了这一分支学科的概念,提出了它的3个研究层次的研究框架,即耐性特征、耐性规律及提高耐性的方法与途径,指出了它的核心思想是:把自然环境看成是具有"生命"的系统,有一定的耐性能力和自我恢复能力,也具有自然免疫的特征和能力.同时,指出了当前急需确定的3个生态环境耐性指标,即容许侵蚀量、容许施肥量和容许承载量.