构建基于GHS标准的黑头呆鱼(Pimephales promelas)急性毒性二元分类模型

鱼类急性毒性参数是进行化学品生态风险评估、分类标签等工作不可或缺的毒性指标。本文选取634个有机化学品对黑头呆鱼(Pimephales promelas)的急性毒性数据,并依据"全球化学品统一分类和标签制度"(GHS)中推荐的分类标准,将急性毒性值小于和大于100 mg·L-1的物质分别划分为有毒物质和无毒物质。以分类结果为建模指标,构建了基于欧几里德距离的K最近邻(k NN)二元分类模型。评估结果表明,模型训练集和验证集的预测准确度(Q)、敏感性(Sn)和特异性(Sp)参数均大于0.7,说明模型具有较好的预测能力。因而,在化学品分类标签工作中,可使用该模型预测缺失的鱼类急性毒性类别。     

有机污染物对水生生物毒性作用机理的判别及影响因素

有机污染物对水生生物急性毒性作用机理的判别及影响因素是定量结构与活性相关研究的基础,对准确预测有机污染物对水生生物的毒性具有重要的意义.本文根据目前国内外在该领域的研究现状和本课题组在该领域的研究成果,系统地总结了有机污染物对水生生物的急性毒性作用机理、毒性作用机理的判别方法、及影响毒性作用机理判别的因素.有机污染物对水生生物的急性毒性作用机理可分为非极性麻醉型、极性麻醉型、反应型和特殊作用型;化合物的毒性比率、毒性临界值和结构警示是目前判别毒性作用机理的主要方法;有机化合物的生物富集、非生物转化、生物代谢、离子化率和溶解度是毒性作用机理判别的主要影响因素.     

农药类化合物对大型溞的毒性作用模式:与基线毒性化合物比较研究

农药在控制有害生物的同时,对水生生态系统产生较大的毒性效应。本文通过实验获得了25种基线化合物对大型溞的急性毒性数据,并与57种农药类化合物对大型溞的急性毒性数据进行比较研究,同时根据体外浓度LC_(50)、生物富集因子BCF和体内临界浓度CBR的关系,计算了这些化合物在大型溞体内的临界浓度,研究了农药类化合物对大型溞的毒性作用机理。结果表明,基线化合物在大型溞体内的临界浓度log1/CBR值在一个很窄的范围波动,而农药类化合物在大型溞体内的临界浓度log1/CBR值范围广且较高。这说明多数农药类化合物对大型溞为反应性毒性作用模式。其中,除草剂对大型溞的毒性显著低于杀菌剂和杀虫剂对大型溞的毒性。这可能是因为除草剂主要通过干扰植物光合作用、植物激素或植物分子合成发挥毒性效应,从而导致其对大型溞的生理系统难以发生反应性毒性效应。而杀虫剂和杀菌剂主要通过干扰生物神经系统、生殖系统、呼吸作用或大分子合成发挥毒性效应,因此易与大型溞生理系统发生生物化学反应,从而具有较高的毒性效应。本文分别建立了除草剂、杀菌剂和杀虫剂对大型溞的急性毒性QSAR模型。除草剂对大型溞的急性毒性机理较简单,其毒性与化合物疏水性程度和离子化程度有关;而杀菌剂对大型溞的急性毒性主要与化合物的标准生成热和极性表面积有关;杀虫剂对大型溞的急性毒性作用机理较复杂,它们对大型溞的毒性效应与其和生物分子之间的氢键和范德华力有关。     

基于本土物种的3种典型化合物急性生态效应阈值研究

预测无效应浓度(PNEC)是进行风险污染物水生态安全管理的重要依据。本研究进行了3种典型化合物五氯酚、硝基苯和氯化镉对10种我国不同营养级水生生物的24 h、48 h和96 h的急性毒性测试,根据实验结果计算了相应的急性PNEC,同时与根据美国环境保护局毒性数据库里的毒性数据计算获得的急性PNEC值,以及综合本实验结果与毒性数据库里的数据计算得到的急性PNEC值进行对比,发现通过3种数据来源获得的急性PNEC值中,硝基苯的PNEC值差异较大,由本次实验结果获得的急性PNEC值最小;其他2种化合物差异较小。这可能是由于本次实验所选的本土生物中华田螺和麦穗鱼对硝基苯比较敏感,并且数据库中硝基苯的急性致死数据较少、毒性值较大且变化范围较窄,而其他2种化合物数据量较为丰富,变化范围较宽,包括了较敏感物种的毒性数据。这表明为给我国水生生物提供一个安全可靠的保护,对于数据量较为丰富并且毒性值变化较宽的化合物(如五氯酚和氯化镉)可以直接根据数据库里的毒性数据进行PNEC值的计算;而对于毒性数据量较少、毒性值偏大且变化较窄的化合物(如硝基苯)需要进行本土敏感物种的毒性测试。     

大数据挖掘和机器学习在毒理学中的应用

随着高通量筛选技术的快速发展,化学品的毒性相关信息与日俱增。现今快速发展的数据挖掘技术和机器学习等计算机方法为化学品的毒性预测和风险防控提供了新途径。有害结局路径(adverse outcome pathway, AOP)将化合物的结构、分子启动事件和生物的有害结局建立关联,为污染物的毒性测试、预测和评估提供了新的模式,最终实现风险评估并应用于管理决策。定量结构-活性关系(QSAR)建模、分子模拟以及多组学技术在AOP的各个方面发挥了重要作用。基于此,本综述主要介绍数据挖掘与机器学习在毒理学中的应用方法,涉及QSAR建模、分子模拟及组学等方面,并结合实例分析系统阐述了当前研究的重点与方向,以更好地适应当前大数据时代的研究背景。     

化学品生态毒性测试鱼类模式生物的应用与展望

水生生物毒性测试广泛应用于评估化学品的水生态环境安全,而鱼类生态毒性数据为水生生态风险评估与风险管理提供基础。本文总结了现有的鱼类水生毒性测试标准及常用的物种。阐述了常用水生鱼类模式生物,如斑马鱼Danio rerio、青鳉鱼Oryzias latipes、黑头软口鲦Pimephales promelas等作为模式鱼类的特征及在生态毒性测试中的应用。环保部7号令推荐稀有鮈鲫Gobiocypris rarus作为中国本土生物在水生毒性测试中使用。目前公开发表的利用稀有鮈鲫的水生毒性研究多集中在急性毒性方面,对其他类型的研究如法规毒理相关的长期慢性毒性有待开展。     

单个药品及其混合物对Aliivibrio fischeri的毒性研究：单一化合物的实验结果，并对其行为机理和对水生生物潜在急性效应进行思考

在这个较广泛的关于单个和多组分混合药物活性化合物影响研究的第一部分,作者使用了Microtox^?测试系统详细分析了10种广泛使用的人用和兽用药活性化合物对生物荧光细菌Aliivibrio fischeri的影响。实验结果表明大多数受试化合物具有中度毒性。对比实验得到的50%抑制浓度和定量构效关系模型预测的结果表明,大多数受试药物活性化合物与极性麻醉型化合物对A. fischeri的行为类似(似乎只有抗生素金霉素有特定的作用机制)。将实验结果与其他不属预定目标的生物急性毒性数据集进行比较表明,一般而言A . fischeri较其他水生物种敏感。然而,根据全球化学品统一分类和标签制度,大部分受调查的化学物质可归为水生生态系统中有害或无毒的化合物。最后,基于欧盟水体中测量的环境浓度第95百分位数和各种水生生物的急性毒性数据的比较,可以认为当受试药物活性化合物作为单一化合物进行评估的时候,不存在水生生物风险。
精选自Valeria Di Nica, Sara Villa, Antonio Finizio. Toxicity of individual pharmaceuticals and their mixtures to Aliivibrio fischeri: experimental results for single compounds and considerations of their mechanisms of action and potential acute effects on aquatic organisms. Environmental Toxicology and Chemistry: Volume 36, Issue 3, pages 807–814, July 2017. DOI: 10.1002/etc.3568
详情请见http://onlinelibrary.wiley.com/wol1/doi/10.1002/etc.3568/full
     

基于范数指数的农药对虹鳟急性毒性的的定量构效关系模型

由于农药的过度使用,水生生态环境正在受到威胁。虹鳟（Oncorhynchus mykiss）的水生毒性在农用化学品环境风险评价中起着重要作用。本文提出了两个范数指数公式,并由此导出几个范数描述符,建立了定量结构-活性关系（QSAR）模型用于预测各种农药对虹鳟的急性毒性（LC50）。结果表明,目前的QSAR模型的R2为0.8053。同时,内部验证（QLOO2=0.7606）、外部验证（Rtraining2=0.8011,Rtesting2=0.8108）、Y-随机化试验和适用域分析进一步证明了该QSAR模型的稳定性、可靠性和广泛的应用领域。因此,这些范数描述符可能适用于描述农药结构以预测水生生物急性毒性。     

卤代苯对江水细菌的慢性毒性

毒性数据是对化学品进行环境风险评价的基础,慢性毒性数据更能真实的反映毒物对水生生物生长、繁殖及生理功能产生的影响。本文采用细菌生长抑制实验,测定了17种卤代苯对长江水中混合细菌的慢性毒性,得到-lgNOEC值,毒性范围在4.27(氯苯)~5.22(1,2,4-三氯苯)之间。选用量化参数对毒性数据进行定量结构活性关系(QSAR)研究,结果表明,卤代苯对江水细菌的慢性毒性主要与化合物分子的空间大小有关,量化参数范德华面积(SVdW)及分子生成热(Hf)能够很好的描述卤代苯对江水细菌的慢性毒性。     

基于物种敏感性分布的保护海水水生生物的石油烃急性毒性基准研究

溢油污染对水生生物的危害以及分散剂使用对原油毒性的影响一直是溢油应急响应及危害评估时关注的焦点。本研究收集筛选了基于标准测试方法的90组急性毒性数据(LC50/EC50),其中37组毒性数据来自15种油品的水容纳组分(water accommodated fraction,WAF),53组来自11种化学分散剂与15种油品的分散液(chemically dispersed water accommodated fraction,CEWAF),应用物种敏感性分布(species sensitivity distribution,SSD)方法推导了基于水生生物保护的石油烃总量(total petroleum hydrocarbon,TPH)的急性毒性基准值,同时还分析了分散剂和不同暴露方式对原油毒性的影响。结果显示,以名义浓度(nominal concentrations)所表示的毒性结果可能高估分散剂对原油毒性的影响,基于CEWAF和WAF的LC50/EC50所推导的有害浓度(HC5s)差异较小,计算出的保护水生生物TPH急性毒性基准值为0.38 mg·L-1(TPH);鱼类对原油污染的响应明显敏感于甲壳类;同时证明了SSD方法在溢油毒性评估及风险阈值推导中具有可行性和合理性。     

Rapid,recurring, structured survey versus bioblitz for generating biodiversity data and analysis with a multispecies abundance model

A bioblitz inexpensively and quickly generates biodiversity data, but bioblitzes are often conducted with haphazard, unreplicated sampling. Results tend to be taxonomically, geographically, or temporally biased, lack metadata, and consist of lists of observed taxa that do not enable further analyses or correction for imperfect detection. A rapid, recurring, structured survey (RRSS) uses a structured sampling design and temporal and spatial replication to survey randomly selected sites on a conservation property. We participated in a loosely structured bioblitz and a subsequent RRSS at Big Canoe Creek Nature Preserve in Springville (St. Clair County), Alabama (USA) to compare observed richness derived from the 2 survey approaches. The RRSS data structure enabled us to fit models that accounted for imperfect detection to estimate abundances, occupancy probabilities, and habitat associations. The loosely structured bioblitz data could not be used in such models. We present a new integrated multispecies abundance model that we applied to avian RRSS data. Our model extension enables estimation for the community, employs data augmentation to estimate the number of undetected species, and incorporates covariates. The RRSS generated a more comprehensive and less biased list of observed taxonomic richness than the loosely structured bioblitz (e.g., 73 vs. 45 bird species and 104 vs. 63 insect families from the RRSS vs. loosely structured bioblitz, respectively). Models fit to the RRSS data identified seasonal patterns in avian community composition and allowed for estimation of habitat–occupancy relationships for insect taxa. The RRSS protocol has potential for broad transferability as a standardized, quick, and inexpensive way to inventory biodiversity and estimate ecological parameters while providing an outreach opportunity.     

Compliance with and ecosystem function of biodiversity offsets in North American and European freshwaters

Land-use change via human development is a major driver of biodiversity loss. To reduce these impacts, billions of dollars are spent on biodiversity offsets. However, studies evaluating offset project effectiveness that examine components such as the overall compliance and function of projects remain rare. We reviewed 577 offsetting projects in freshwater ecosystems that included the metrics project size, type of aquatic system (e.g., wetland and creek), offsetting measure (e.g., enhancement, restoration, and creation), and an assessment of the projects’ compliance and functional success. Project information was obtained from scientific and government databases and gray literature. Despite considerable investment in offsetting projects, crucial problems persisted. Although compliance and function were related to each other, a high level of compliance did not guarantee a high degree of function. However, large projects relative to area had better function than small projects. Function improved when projects targeted productivity or specific ecosystem features and when multiple complementary management targets were in place. Restorative measures were more likely to achieve targets than creating entirely new ecosystems. Altogether the relationships we found highlight specific ecological processes that may help improve offsetting outcomes.     

Representation of the world's biophysical conditions by the global protected area network

Protected areas (PAs) are often implemented without consideration of already existing PAs, which is likely to cause an overrepresentation of certain biophysical conditions. We assessed the representativeness of the current PA network with regard to the world's biophysical conditions to highlight which conditions are underprotected and where these conditions are located. We overlaid terrestrial and marine PAs with information on biophysical conditions (e.g., temperature, precipitation, and elevation) and then quantified the percentage of area covered by the PA network. For 1 variable at a time in the terrestrial realm, high temperature, low precipitation, and medium and very high elevation were underrepresented. For the marine realm, low and medium sea surface temperature (SST), medium and high sea surface salinity (SSS), and the deep sea were underrepresented. Overall, protection was evenly distributed for elevation across the terrestrial realm and SST across the marine realm. For 2 variables at a time, cold and very dry terrestrial environments had mostly low protection, which was also the case for low SST and low and medium SSS across most depths for marine environments. Low protection occurred mostly in the Sahara and the Arabian Peninsula for the terrestrial realm and along the Tropic of Capricorn and toward the poles for the marine realm. Although biodiversity measures are of prime importance for the design of PA networks, highlighting biophysical gaps in current PAs adds a frequently overlooked perspective. These gaps may weaken the potential of PAs to conserve biodiversity. Thus, our results may provide useful insights for researchers, practitioners, and policy makers to establish a more comprehensive global PA network.     

Quantitative composition of the defensive secretion ofBledius species (Coleoptera: Staphylinidae: Oxytelinae) is adapted to naturally occurring predators

Summary The adaptation of defensive secretions to their target organisms was examined for the abdominal gland secretions ofBledius furcatus, B. spectabilis andB. arenarius. Therefore the target organisms of the secretion of theseBledius species (i.e. their predators) had to be identified. At the collection sites examined these were the earwigLabidura riparia, the antCataglyphis bicolor, the flyLispe candicans, different carabids of the generaPogonus, Dichirotrichus, Dyschirius, Bembidion andCalathus and the wading birdsHaematopus ostralegus andCalidris alba. The secretion of the abdominal glands contains the toxin ptoluquinone dissolved in either-dodecalactone and 1-undecene (B. furcatus andB. spectabilis) or in octanoic acid and octyloctanoate (B. arenarius). The ratio of these solvents is species-specific. Application experiments using some of the natural insect predators (L. riparia, C. bicolor, Pogonus, Di. gustavii, Dyschirius) revealed that these solvent ratios provided a more effective deterrent than other possible ratios. Thus by combining the solvents in certain ratios, the capability of cuticular penetration and therefore the effectiveness of the defensive secretions are adapted to their natural targets.     

Democracy versus development: New urban debates

The politics of development includes subtexts of choice, as underpinned by community consensus (or lack of it), against the larger backdrop of a liberal democracy, with its intricate power structures that influence the choice of concepts and often lead to complicity rather than consent. A dilemma exists between the understanding of field-level practitioners and that of academics, whose understandings of progress differ. Progress can (and often does) imply long-term change across generations whereas development is often more a matter of crisis management and delivering tangible results to end-users. This makes it a bone of contention across political systems, irrespective of local or global dynamics. Development can emerge as a tool to be wielded for power and further political mileage at the expense of progress. Progress cannot be studied as a counterpoint to development as the sense of history is often missing in development interventions. Development tends to be piecemeal as its very logic often stems from the rationale of power. This is not to suggest, however, that development is only about politics; it is definitely more than the politics of everyday life and involves all of civil society that requires its critical and immediate attention. In this sense, it has become a priority for politicians with an underlying agenda designed to out-manouevre dissent and all statements of protest.     

A palaeo-hydrogeological model for arsenic contamination in southern and south-east Asia

An argument is presented in which areas of natural arsenic contamination of modern groundwaters throughout Asia have a common origin. Arsenic originally accumulated in oceanic ferro-manganoan sediments of the eastern Palaeo-Tethys. This was further concentrated through oceanic crustal extinction in what later became the south-east Chinese accreted mineralised terrain. Proto-Himalayan uplift of this area created the palaeo-drainage systems of the Ganges – Brahmaputra, Irrawaddy, Mekong, and Red Rivers, with consequent headwater erosion of arsenic-rich sediments. Their downstream deposition as immature and easily redistributed Neogene sandstones, silts, and iron-rich clays has created secondary and tertiary reservoirs of adsorbed and authigenic arsenic, from which the current arsenic-rich groundwaters have evolved. Considering river basins within the above palaeo-hydrogeological framework provides a basis for assessing the risk of arsenic in groundwater basins of south and south-eastern Asia.     

A framework to measure the wildness of managed large vertebrate populations

As landscapes continue to fall under human influence through habitat loss and fragmentation, fencing is increasingly being used to mitigate anthropogenic threats and enhance the commercial value of wildlife. Subsequent intensification of management potentially erodes wildness by disembodying populations from landscape-level processes, thereby disconnecting species from natural selection. Tools are needed to measure the degree to which populations of large vertebrate species in formally protected and privately owned wildlife areas are self-sustaining and free to adapt. We devised a framework to measure such wildness based on 6 attributes relating to the evolutionary and ecological dynamics of vertebrates (space, disease and parasite resistance, exposure to predation, exposure to limitations and fluctuations of food and water supply, and reproduction). For each attribute, we set empirical, species-specific thresholds between 5 wildness states based on quantifiable management interventions. We analysed data from 205 private wildlife properties with management objectives spanning ecotourism to consumptive utilization to test the framework on 6 herbivore species representing a range of conservation statuses and commercial values. Wildness scores among species differed significantly, and the proportion of populations identified as wild ranged from 12% to 84%, which indicates the tool detected site-scale differences both among populations of different species and populations of the same species under different management regimes. By quantifying wildness, this framework provides practitioners with standardized measurement units that link biodiversity with the sustainable use of wildlife. Applications include informing species management plans at local scales; standardizing the inclusion of managed populations in red-list assessments; and providing a platform for certification and regulation of wildlife-based economies. Applying this framework may help embed wildness as a normative value in policy and mitigate the shifting baseline of what it means to truly conserve a species.     

Sexual Predators,Energy Development,and Conservation in Greater Yellowstone

Abstract: In the United States, as elsewhere, a growing debate pits national energy policy and homeland security against biological conservation. In rural communities the extraction of fossil fuels is often encouraged because of the employment opportunities it offers, although the concomitant itinerant workforce is often associated with increased wildlife poaching. We explored possible positive and negative factors associated with energy extraction in the Greater Yellowstone Ecosystem (GYE), an area known for its national parks, intact biological diversity, and some of the New World's longest terrestrial migrations. Specifically, we asked whether counties with different economies—recreation (ski), agrarian (ranching or farming), and energy extractive (petroleum)—differed in healthcare (gauged by the abundance of hospital beds) and in the frequency of sexual predators. The absolute and relative frequency of registered sex offenders grew approximately two to three times faster in areas reliant on energy extraction. Healthcare among counties did not differ. The strong conflation of community dishevel, as reflected by in‐migrant sexual predators, and ecological decay in Greater Yellowstone is consistent with patterns seen in similar systems from Ecuador to northern Canada, where social and environmental disarray exist around energy boomtowns. In our case, that groups (albeit with different aims) mobilized campaigns to help maintain the quality of rural livelihoods by protecting open space is a positive sign that conservation can matter, especially in the face of rampant and poorly executed energy extraction projects. Our findings further suggest that the public and industry need stronger regulatory action to instill greater vigilance when and where social factors and land conversion impact biological systems.     

Cost‐effective conservation of an endangered frog under uncertainty

How should managers choose among conservation options when resources are scarce and there is uncertainty regarding the effectiveness of actions? Well‐developed tools exist for prioritizing areas for one‐time and binary actions (e.g., protect vs. not protect), but methods for prioritizing incremental or ongoing actions (such as habitat creation and maintenance) remain uncommon. We devised an approach that combines metapopulation viability and cost‐effectiveness analyses to select among alternative conservation actions while accounting for uncertainty. In our study, cost‐effectiveness is the ratio between the benefit of an action and its economic cost, where benefit is the change in metapopulation viability. We applied the approach to the case of the endangered growling grass frog (Litoria raniformis), which is threatened by urban development. We extended a Bayesian model to predict metapopulation viability under 9 urbanization and management scenarios and incorporated the full probability distribution of possible outcomes for each scenario into the cost‐effectiveness analysis. This allowed us to discern between cost‐effective alternatives that were robust to uncertainty and those with a relatively high risk of failure. We found a relatively high risk of extinction following urbanization if the only action was reservation of core habitat; habitat creation actions performed better than enhancement actions; and cost‐effectiveness ranking changed depending on the consideration of uncertainty. Our results suggest that creation and maintenance of wetlands dedicated to L. raniformis is the only cost‐effective action likely to result in a sufficiently low risk of extinction. To our knowledge we are the first study to use Bayesian metapopulation viability analysis to explicitly incorporate parametric and demographic uncertainty into a cost‐effective evaluation of conservation actions. The approach offers guidance to decision makers aiming to achieve cost‐effective conservation under uncertainty.     

Comparison of the insecticidal effects of water extracted and intact aromatic plants onAcanthoscelides obtectus,a bruchid beetle pest of kidney beans

Summary Acanthoscelides obtectus (Say) is one of the most damaging pests of kidney beans,Phaseolus vulgaris L. worldwide. However, aromatic plants from the families Lamiaceae, Lauraceae, Myrtaceae and Poaceae can protect kidney beans by direct or delayed insecticidal effect, through increased adult mortality and inhibition of beetle reproduction (both oviposition and adult emergence). The efficiency of hydrodistillated and intact plants fromThymus vulgaris andT. serpyllum, Mentha piperata, Rosmarinus officinalis, Satureia hortensis, Eucalyptus globulus, Laurus nobilis, Origanum vulgare, andCymbopogon nardus was compared. For both extracts,Origanum vulgare had the best effect. The insecticidal effect was induced by more than the essential oils because no significant difference was noticed between distilled and intact plants extract. Inhibition of reproduction was particularly important. These results suggest that lipidic as well as non lipidic, allelochemicals, such as phenolics, or non-protein amino-acids, or flavonoids may be involved in the toxicity of aromatic plants to this beetle.