Variations de la concentration bactérienne dans les eaux et les sédiments littoraux

Bacterial counts, carried out bi-mouthly over 2 years, at diverse localities on the Provence shores (France), revealed that the bottom-water microflora is not dependent on chemical and biological characteristics of the upper sediment layer. Freshwater inflow, polluted or non-polluted, and high concentrations of suspended particulate matter usually induce the highest bacterial counts. The concentration of microflora in marine muds and sands is connected with their organic content. There is no apparent correlation with water microflora concentration or macrobenthos density. The area of highest bacterial concentration is restricted to a narrow, thin belt of littoral sediment. Bacterial transformation is probably more important in the water mass as a whole than in marine deposits. The annual range of variations in microflora distribution is higher than the range which was encountered when testing the validity of the bacterial count method with the sampling technique employed. Certain bacterial concentrations, appearing simultaneously in different sediment layers and at different stations seem to be related to ecological factors. Such variations seem to realize a true annual cycle. The highest counts occur during the warm season, unlike the phytoplankter populations. Bacterial proliferation in water masses usually succeeds to phytoplankton blooms.     

Physico-chemical and microbial characteristics of the coral reef environment of the Gulf of Mannar marine biosphere reserve, India

Investigation on physico-chemical parameters and bacteial characteristics of the coral reef environs of the Gulf of Mannar biosphere reserve was studied. The study found the influence of different physico-chemical parameters on one another and also on the distribution of the total heterotrophic bacteria (THB) in the coral reef areas. Nutrients exhibited considerable seasonal and spatial variations with influence on the bacterial population. Coral reef areas recorded higher bacterial population density both in water (3.5 to 18 x 10(5) CFU ml(-1)) and sediment (1 to 14 x 10(7) CFU g(-1)) samples than the non coral reef areas (3.4 to 10.5 x 10(4) CFU ml(-1) in water and 0.9 to 7 x 10(6) CFU g(-1)). The study also found the dominance of gram negative groups at all the three stations (64.73, 63,5 and 72.59%) with Pseudomonas contributing maximum number of strains in all the samples. In addition Vibrio, Aeromonas, Flavobacterium, Cytophaga, Enterobacter and Alcaligenes were also recorded. The gram positive group was represented by Bacillus, Micrococcus, Arthrobacter and Corynebacterium. The genetic composition of THB isolated from the coral mucus revealed the presence of Vibrio and Micrococcus in all the coral mucus.     

Effects of river sediment addition to the beach microbial communities

During the processes of claiming land from the sea, river sediments are used to fill and transform the sea area along the margin of islands and lands into new lands. These activities would probably affect microbial ecosystems of the beach sediment. However, little is known about these effects. In this study, a simulation test was conducted to evaluate these effects. Pyrosequencing technique was employed to assess the effects of river sediment addition to the beach bacterial communities. The used river sediments were collected from different rivers. The results indicated that river sediment addition greatly impacted microbial ecosystems of the beach and caused a clear shift in the beach bacterial community composition. These processes remarkably increased toxic metals and decreased the bacterial diversity in the beach sediment, mainly including the phyla of Bacteroidetes, Cyanobacteria, Proteobacteria, and Spirochaetes. River sediment addition caused an increase in potentially pathogenic bacterial genera of the beach sediment. Bacterial phylotype richness in the beach without river sediment addition was higher than that in the beach with river sediment input. There were significant differences in bacterial communities between beach sediments with and without river sediment addition, and the most dominant classes were Gammaproteobacteria and Flavobacteria.     

16S rDNA克隆文库解析江汉平原高砷地下水系统中的细菌多样性

为研究江汉平原高砷地下水系统中细菌多样性和种群结构,以2011年11月采自江汉平原仙桃市沙湖镇高砷含水层沉积物为研究对象,沉积物采自同一50m钻井,分别选取埋深9.9～10.1m和15.7～16.0m样品。提取沉积物中总DNA,采用16SrDNA克隆文库方法,分析高砷含水层沉积物中土壤细菌的多样性。结果发现,伯克氏菌目(Burkholderiales)、假单胞杆菌目(Pseudomonadales)和肠杆菌目(Enterobacteriales)构成了高砷系统中抗砷的优势菌群。结果表明,高砷含水层中生活有大量微生物,这些微生物在砷的地球化学循环中扮演着重要角色。     

Bacterial production in North Sea sediments: clues to seasonal and spatial variations

Benthic bacterial production and biomass were measured at 16 stations in the North Sea covering a wide range of sediment types from the Southern Bight and the English coast to the Skagerrak. Stations were sampled in August 1991 and February 1992. The best predictor for summer/winter and spatial variations in benthic bacterial production in North Sea sediments was temperature. In winter the ranges in temperature were too small to account for the spatial variations in benthic bacterial production. The direct effect of temperature alone on bacterial production could not explain the variations. The apparent Q₁₀-values derived from the relations between bacterial growth and temperature exceeded the range in Q₁₀-values generally accepted for bacterial growth (between 2 and 3). Temperature was assumed to covary closely with substrate availability for bacteria. Due to its significant seasonality phytopigment content of the sediment (chlorophyll a and pheopigment) was found to be a better indicator of substrate availability than sediment organic matter, which did not demonstrate seasonality. Temperature and phytopigment accounted for up to 88% of the seasonal and spatial variations in bacterial production. The significant relations between bacterial production and biomass in summer coinciding with significant relations between bacterial biomass and phytopigments suggest that variations in phytopigments in the sediment may be indicators of the variability of labile components regulating bacterial production in sediments.     

台湾海峡水域的β—葡萄糖苷酶活性

本研究分别在1997年8月10日至8月19日,1998年2月20日至3月7日,对台湾海峡进行现场调查研究,在九个断面20个站位取得水文、化学和生物学综合参数,研究该海域β－葡萄糖苷酶活性（βGlcA),细菌生物量及生产力的时空动态,主要结果如下①夏季台湾海峡南部各站位βGlcA的值为1．94mmol/L^-1h^-1,变化幅度大于（0．31－8．1nmol/L^-1h^-1;冬季海峡北部βGlcA平均值为0．86nmol/L^-1h^-1,变化幅度大（0．34－1．89nmol/L^-1h^-1)远小于夏季。②以碳的转化量表示,夏冬两季的βGlcA分别为0．14μgL6-1h^-1和0．062μgL6-1h^-1,分别高于这两个季节的细菌生产力。③从离岸到近岸,细菌胞外酶活性升高。④该海域胞牙酶活性与细菌的二次生产力的相关性不够明显。⑤βGlcA的剖面分布及周日变化与细菌生产力的相关性不很明显。⑥表层水游离态的细菌的βGlcA,在整个海区的分布特征与该水层的总βGlcA分布特征相似。     

辽东湾大凌河口湿地土壤微生物群落分析

土壤微生物对湿地生态系统的物质转化和能量流动具有重要作用,目前对天然湿地的微生物资源及群落结构缺少研究。应用PCR-DGGE技术研究辽东湾大凌河口湿地土壤中的微生物群落结构,并对其群落组成进行分析,结合冗余分析（RDA）方法考察环境因子对微生物群落结构的影响。共设定7个站位采集土壤样品,直接提取样品中微生物的总DNA,以巢式PCR扩增细菌16S rDNA-V3区片段,应用变性梯度凝胶电泳（DGGE）技术分离片段,研究河口区湿地土壤细菌的群落结构。结果表明：辽东湾大凌河口区土壤具有较为丰富的细菌种群,主要包含Proteobacteria、Actinobacteria和Bacteroidetes几大类门,且同一季节采集的样品在聚类分析图上聚类成簇。RDA分析表明,土壤的温度与盐度2个变量分别解释了6.5%、2.3%的土壤细菌群落结构变化,表明大凌河口区土壤的群落结构变化是多种环境因子共同作用的结果,其中温度的影响略大于盐度。     

Studies on the sublittoral free-living nematodes of Liverpool Bay. I. The structure and distribution of the nematode populations

Data collected from a survey of the benthic fauna of Liverpool Bay (UK) have been used to study the distribution and structure, in terms of percent age dominance and percent age frequency, of the nematode populations. Cluster analysis of the faunistic data from individual stations has shown that the populations are not sharply delimited. The relative proportions of their characteristic genera are extremely variable, and apparently influenced by small differences in sediment composition. It is, thus, considered more logical to think in terms of a number of different habitats, each with certain characteristic genera, rather than in terms of a series of discrete associations. Six types of habitat are distinguished on the basis of sediment granulometry: (1) mud and sandy mud; (2) very muddy sand; (3) muddy sand; (4) muddy sand-gravel mixtures; (5) clean sand-gravel mixtures; (6) clean sand. Habitats 1, 2 and 3 were dominated by Sabatieria spp., the degree of dominance apparently being related to the percentage of silt-clay. Habitat 4 was dominated by Neochromadora sp. and Sabatieria spp. and Habitats 5 and 6 by Desmodora sp. Both generic and dominance diversity were very much lower for Habitats 1 and 2 than elsewhere.     

The seasonal selection by temperature of heterotrophic bacteria in an intertidal sediment

The seasonal selection by temperature of bacteria in an intertidal sediment was investigated, and a simplified method of demonstrating the temperature adaption of a mixed heterotrophic bacterial population was suggested. The method relied upon counting the bacteria which grew at only two separate incubation-temperatures, and compared favourably with more tedions methods which utilise replicated cultures grown at a large number of incubation temperatures. Using this technique, a temperature adaptation index was calculated for the heterotrophic bacterial population and changes in the value of this index were shown to be correlated with seasonal changes of environmental temperature.     

Single-species bacteria in sediments induce larval settlement of the infaunal polychaetes Polydora cornuta and Streblospio benedicti

Larval settlement of the infaunal spionid polychaetes Polydora cornuta and Streblospio benedicti is mediated by sediment-associated microorganisms. To investigate if larval preference for certain sediment is guided by individual sediment-associated bacteria, 13 bacterial isolates (5 phyla) obtained from the natural habitat of adult polychaetes (Wadden Sea, Germany) in 2008 were screened in still-water, no-choice settlement assays. Two isolates (α-Proteobacterium-Strain DF11 and Flavobacterium-Strain 54) significantly triggered larval settlement in comparison with sterile sediment. In still-water, multiple-choice settlement assays comprising natural and sterile sediment and sediment re-inoculated with isolates DF11 and 54, significant preferences for natural sediment and sediment containing bacterial isolates at 10⁸ cells g^?1 were observed. Larval settlement was influenced by bacterial abundance in sediment but the correlation was not strictly positive; thus, maximum larval settlement in response to single bacterial species may occur at certain optimum densities. Non-viable or suspended bacteria and water-soluble bacterial products did not induce larval settlement, suggesting that sediment-associated bacterial settlement cues for P. cornuta and S. benedicti were either produced in situ and/or consisted of heat-labile bacterial products.     

Algal community used for assessment of water quality of Haranbaree dam and Mosam river of Maharashtra

An algal community was used to assess the quality of water of Haranbaree dam and Mosam river of Maharashtra. Pollution tolerant genera and species of 4 groups of algae from each of 3 stations of Haranbaree dam and Mosam river were recorded. By using Palmer's index of pollution for rating of water samples the total score of each station of study area was greater than 20 indicating the confirmed high organic pollution. 34 pollution tolerant genera were recorded at all stations of dam and river. Out of 34 pollution tolerant genera, 27 genera and 33 genera were observed at the dam and river sites respectively. In present study 22 pollution tolerant species are observed at dam and river sites.     

Distribution and mortality of diapause eggs from calanoid copepods in relation to sedimentation regimes

Distribution, abundance and age of diapause eggs from three species of calanoid copepods (in particular from Acartia spp. most likely Acartia tonsa, and Centropages hamatus and less numerous from Temora longicornis) were recorded in sediment profiles by enumerating hatched nauplii from incubated sediment samples. Phytoplankton pigments and ²¹⁰Pb and ¹³⁷Cs analyses indicated that the sedimentation regimes were different between two southern and two northern stations of the island Funen, Denmark. Significant variations in vertical distribution, abundance and mortality of diapause eggs were found between the stations. Dating of the sediment cores suggested a ~70-year maximum age of viable eggs on the northernmost stations, and ~28 year at the southernmost stations. The eggs exhibited a significantly higher mortality rate at the southernmost stations compared with the northernmost, 0.35–0.53 year⁻¹ vs. 0.07–0.08 year⁻¹ with no systematic pattern among species. The differences in abundance, mortality and age of the diapause eggs are suggested to be due to the sediment characteristics in which they are buried.     

Population dynamics and secondary production in an estuarine population of Nephtys hombergii (Polychaeta: Nephtyidae)

From July 1978 to March 1980, a study was made on the distribution, population dynamics and secondary production of Nephtys hombergii Audouin et Edw. occurring in the sublittoral industrialised region of Southampton Water in south England. The distribution of the worm was related to the silt content and copper level of the sediment, the greatest densities of N. hombergii being found in sediment containing 60 to 100% silt. Breeding occurred at a low level throughout the year, with a maximum in July to September and November to January in the second year of growth. Spawning occurred when the oocytes measured 200m in diameter, and unshed gametes were resorbed. Annual production varied between 0.092 and 4.32 g C m^-2 yr^-1 (ash-free dry weight) and amounted to 1.9–39.4% of the total macrofaunal production at the sampling stations. The production:biomass (P:B) ratio of the species varied between 1.6 and 2.9.     

Influence of the mineralogical composition on microbial activities in marine sediments: an experimental approach

We investigated the influence of the mineralogical composition of marine sediments on bacterial activity in experimental microcosms. Calcite and quartz were added to natural marine sediments and microbial response in terms of total bacterial abundance and biomass, β-D-glucosidase exo-enzymatic activity and bacterial incorporation of a radio-labelled (³H-leucine) substrate were investigated for a period of one month. We report here that after 15 days the mineralogical composition of the sediment (calcite vs. quartz) had an impact on bacterial abundance and activity (reduced for ca 15% and 56%, respectively). However, such impact was mitigated or even disappeared in high organic nutrient conditions.     

Different response of bacterial community to the changes of nutrients and pollutants in sediments from an urban river network

• Bacterial community varied spatially in sediments from the urban river network. • Key environmental factors shaping bacterial community were detected by RDA. • Bacterial co-occurrence networks changed at different levels of nutrient and metal. • Potential indicator species were selected to predict pollution risk in sediment. Microbial communities in sediment are an important indicator linking to environmental pollution in urban river systems. However, how the diversity and structure of bacterial communities in sediments from an urban river network respond to different environmental factors has not been well studied. The goal of this study was to understand the patterns of bacterial communities in sediments from a highly dense urbanized river network in the lower Yangtze River Delta by Illumina MiSeq sequencing. The correlations between bacterial communities, the environmental gradient and geographical distance were analyzed by redundancy analysis (RDA) and network methods. The diversity and richness of bacterial community in sediments increased from upstream to downstream consistently with the accumulation of nutrient in the urban river network. Bacterial community composition and structure showed obvious spatial changes, leading to two distinct groups, which were significantly related to the characteristics of nutrient and heavy metal in sediments. Humic substance, available nitrogen, available phosphorus, Zn, Cu, Hg and As were selected as the key environmental factors shaping the bacterial community in sediments based on RDA. The co-occurrence patterns of bacterial networks showed that positive interaction between bacterial communities increased but the connectivity among bacterial genera and stability of sediment ecosystem reduced under a higher content of nutrient and heavy metal in average. The sensitive and ubiquitous taxa with an overproportional response to key environmental factors were detected as indicator species, which provided a novel method for the prediction of the pollution risk of sediment in an urban river network.     

Sediment texture and nutrients of Arasalar estuary, Karaikkal, south-east coast of India

Sediment samples were collected for texture, composition and nutrient such as organic carbon, total nitrogen and total phosphorus for a period of two years from three stations in Arasalar estuary. The sediment temperature, pH and nutrients were higher during summer season and lower during monsoon season. At station 1, sediment texture was loamy sand during summer and premonsoon season. At station 2, clay type soil was recorded. Whereas, at station 3, clay was observed in summer and premonsoon and then it shifted to sandy loam type soil during monsoon. Sediment nutrients were lower than that of values of various ecosystem of India.     

Sedimentation of organic detritus in Lochs Etive and Creran,Argyll, Scotland

The rates of sedimentation of organic detritus were measured at 3 stations in two Scottish sea lochs, Loch Etive and Loch Creran, using sedimentation jars exposed at various depths. Details are given of the seasonal and depth distribution of sedimenting material, and its composition for a 1-year period. Differences in the pattern of sedimenting material collected at different depths and in the seasonal patterns of sedimentation at the different stations suggested that, in each case there were differences in the relative importance of detritus from various sources. At all stations, phytoplankton production made a relatively small contribution to the total detritus collected, either directly as dead cells, or indirectly as the faeces of zooplankton organisms. Near the head of Loch Etive there were contributions by filamentous algae and Enteromorpha sp., but a major source of detritus was terrestrial debris, mainly carried into the loch in the waters of the River Etive. In the lower basin of Loch Etive, terrestrial detritus also contributed to the total sedimenting near the surface, but at greater depths much of the material collected in the sedimentation jars probably resulted from short-term resuspension and re-deposition of bottom material, reflecting a net transport of fine sediment from the shallower to the deeper areas of the loch. Secondarily resuspended material was also a major source of material collected in the jars exposed in Loch Creran.     

Foraminifera of Arasalar estuary, Karaikkal, south east coast of India

A total of fifty-two foraminiferal species belonging to 23 genera and 16 families were recorded from Arasalar estuary for a period of one year (July 2000 to June 2001). Miliammina fusca, Quinqueloculina agglutinans, Q. seminula, Cibicides refulgens, Ammonia beccarii, Elphidium clavatum, E. incertum are the abundant species. Due to marine water influence the number and populations of foraminifera was high during summer and premonsoon seasons. The various ecological parameters such as temperature, salinity, pH, dissolved oxygen of bottom water and sediment organic matter were studied. Salinity is the key factor for governing distribution and abundance of foraminifera of this estuary.     

Influence of the mineralogical composition on microbial activities in marine sediments: an experimental approach

We investigated the influence of the mineralogical composition of marine sediments on bacterial activity in experimental microcosms. Calcite and quartz were added to natural marine sediments and microbial response in terms of total bacterial abundance and biomass, β-D-glucosidase exo-enzymatic activity and bacterial incorporation of a radio-labelled (³H-leucine) substrate were investigated for a period of one month. We report here that after 15 days the mineralogical composition of the sediment (calcite vs. quartz) had an impact on bacterial abundance and activity (reduced for ca 15% and 56%, respectively). However, such impact was mitigated or even disappeared in high organic nutrient conditions.     

Spatial variability of length-specific production in shell,somatic tissue and sexual products of Macoma balthica in the Lower St. Lawrence Estuary

A field study on the spatial variability of production and some demographic parameters was conducted in 1988 in ten populations of Macoma balthica located on the north and south shores along the entire length (230 km) of the Lower St. Lawrence Estuary (LSLE, Canada) at the same intertidal level. Standard-length estimates (10 mm) of shell and somatic tissue production for the period of May to November were highly variable between stations and greater on the north shore than on the south shore. Standard-length estimates of the gamete production for the period of July to November were also highly variable between stations but there was no variation between shores. The inter-population variability of the standard-length estimates of production in shell, somatic tissue and sexual products was as large as the intrapopulation variability between both the upper and lower tidal levels measured in previous studies. There were no significant linear relationships between standard-length estimates of production and biotic (density) or abiotic (temperature, chlorophyll-a in top sediment, mean phi, water salinity) factors, but we observed some significant quadratic relationships between standard-length estimates of production and mean sediment-surface temperature during the growing season. The standard-length estimates of production were lower at the coldest and warmest stations than at the more temperature stations. There was also a significant negative linear relationship between mean sediment-surface temperature during the growing season and the grain size structure of sediment, indicating that the sediment texture, indirectly, largely influenced the inter-station and the inter-shore variability of production in shell, somatic tissue and sexual products of M. balthica in the LSLE.