Haloalkane and haloacid dehalogenases from aerobic bacterial isolates indigenous to contaminated sites in Africa demonstrate diverse substrate specificities

Five bacteria were isolated from contaminated sites in Nigeria and South Africa using the culture enrichment technique. They were subjected to standard cultural, biochemical and microbiological techniques and identified to be species of Bacillus, Burkholderia, Corynebacterium, Micrococcus and Pseudomonas. Axenic cultures of the bacterial isolates utilized 1,2-dichloroethane (1,2-DCE) as the sole carbon source up to a final substrate concentration of 10 mM. Their mean generation time in 1,2-DCE ranged significantly (P<0.05) from 9.77 to 15.72 h with the maximum chloride release ranging between 59% and 86%. All the bacterial isolates produced two different dehalogenases, viz. one which is heat labile and specific for halogenated alkanes with optimum activity at a pH of 7.5 and the other which is more heat stable with a higher pH optimum of 9.0 and specific for halogenated alkanoic acids. However, the two enzyme types when tested demonstrated wide substrate specificities. It is therefore adjudged that these organisms may play a vital role in the bioremediation of sites polluted with chlorinated hydrocarbons.     

Biostimulation and bioaugmentation enhances aerobic biodegradation of dichloroethenes

The accumulation of dichloroethenes (DCEs) as dominant products of microbial reductive dechlorination activity in soil and water represent a significant obstacle to the application of bioremediation as a remedial option for chloroethenes in many contaminated systems. In this study, the effects of biostimulation and/or bioaugmentation on the biodegradation of cis- and trans-DCE in soil and water samples collected from contaminated sites in South Africa were evaluated in order to determine the possible bioremediation option for these compounds in the contaminated sites. Results from this study indicate that cis- and trans-DCE were readily degraded to varying degrees by natural microbial populations in all the soil and water samples tested, with up to 44% of cis-DCE and 41% of trans-DCE degraded in the untreated soil and water samples in two weeks. The degradation rate constants ranged significantly (P<0.05) between 0.0938 and 0.560 wk(-1) and 0.182 and 0.401 wk(-1), for cis- and trans-DCE, respectively, for the various treatments employed. A combination of biostimulation and bioaugmentation significantly increased the biodegradation of both compounds within two weeks; 14% for cis-DCE and 18% for trans-DCE degradation, above those observed in untreated soil and water samples. These findings support the use of a combination of biostimulation and bioaugmentation for the efficient biodegradation of these compounds in contaminated soil and water. In addition, the results clearly demonstrate that while naturally occurring microorganisms are capable of aerobic biodegradation of cis- and trans-DCE, biotransformation may be affected by several factors, including isomer structure, soil type, and the amount of nutrients available in the water and soil.     

Removal of heavy metals from anaerobically digested sewage sludge by isolated indigenous iron-oxidizing bacteria

The removal of heavy metals (Cr, Cu, Zn, Ni and Pb) from anaerobically digested sludge from the Yuen Long wastewater treatment plant, Hong Kong, has been studied in a batch system using isolated indigenous iron-oxidizing bacteria. The inoculation of indigenous iron-oxidizing bacteria and the addition of FeSO4 accelerated the solubilization of Cr, Cu, Zn, Ni and Pb from the sludge. pH of the sludge decreased with an increase in Fe2+ concentrations and reached a low pH of 2-2.5 for treatments receiving both bacterial inoculation and FeSO4. After 16 days of bioleaching, the following heavy metal removal efficiencies were obtained: Cr 55.3%, Cu 91.5%, Zn 83.3%, Ni 54.4%, and Pb 16.2%. In contrast, only 2.6% of Cr, 42.9% of Cu, 72.1% of Zn, 22.8% of Ni and 0.56% of Pb were extracted from the control without the bacterial inoculation and addition of FeSO4. The residual heavy metal content in the leached sludge was acceptable for unrestricted use for agriculture. The experimental results confirmed the effectiveness of using the isolated iron-oxidizing bacteria for the removal of heavy metals from sewage sludge.     

Aerobic degradation of di- and trichlorobenzenes by two bacteria isolated from polluted tropical soils

Two polychlorinated biphenyl (PCBs)-degrading bacteria were isolated by traditional enrichment technique from electrical transformer fluid (Askarel)-contaminated soils in Lagos, Nigeria. They were classified and identified as Enterobacter sp. SA-2 and Pseudomonas sp. SA-6 on the basis of 16S rRNA gene analysis, in addition to standard cultural and biochemical techniques. The strains were able to grow extensively on dichloro- and trichlorobenzenes. Although they failed to grow on tetrachlorobenzenes, monochloro- and dichlorobenzoic acids, they were able to utilize all monochlorobiphenyls, and some dichlorobiphenyls as sole sources of carbon and energy. The effect of incubation with axenic cultures on the degradation of 0.9 mM 1,4-dichlorobenzene, 0.44 mM 1,2,3- and 0.43 mM 1,3,5-trichlorobenzene in mineral salts medium was studied. Approximately, 80-90% of these xenobiotics were degraded in 200 h, concomitant with cell increase of up to three orders of magnitude, while generation times ranged significantly (P<0.05) from 17-32 h. Catechol 1,2-dioxygenase and catechol 2,3-dioxygenase activities were detected in crude cell-free extracts of cultures pre-grown with benzoate, with the latter enzyme exhibiting a slightly higher activity (0.15-0.17 micromolmin(-1) mg of protein(-1)) with catechol, suggesting that the meta-cleavage pathway is the most readily available catabolic route in the SA strains. The wider substrate specificity of these tropical isolates may help in assessing natural detoxification processes and in designing bioremediation and bioaugmentation methods.     

PAHs biodegradation in intertidal surface sediment by indigenous microorganisms

In this study, the 30-day aerobic microorganism-mediated biodegradation of polycyclic aromatic hydrocarbons (PAHs) was investigated in four size fractions (i.e., <0.002, 0.002–0.031, 0.031–0.063 and >0.063 mm) of sand-dominated sediment S1 and mud-dominated S2 collected from intertidal zones in Bohai Bay (China). Prior to biodegradation, the total quantity of phenanthrene, fluoranthene and pyrene comprised more than 80 % of the total quantity of 16 EPA-priority PAHs in each size fraction, with the exception of 70.33 % found in the >0.063 mm fraction of sediment S1. Among the three dominant compounds, the intermediate size fraction (0.031–0.063 mm) showed higher levels of biodegradation than other size fractions in sediment S1 and S2. After pooling data from sediment S1 and S2 for joint analysis, it was observed that the biodegraded portion of the three dominant compounds showed negative correlations with both total organic carbon (TOC) and humic coverage index (HCI) in the size fractions. The observed negative correlation with TOC was in agreement with findings in many other studies, but the negative correlation with HCI had not been observed in early studies, which only investigated aged sediment/soil samples. The findings in this study indicated that the greatest bioavailability of PAHs in intertidal surface sediment may be present in sediment particles of intermediate size and mobility, and that intertidal sediment particles are less likely to experience sufficient ageing given periodical tidal disturbance. These findings have important implications for the assessment of the environmental fate of PAHs in intertidal regions.     

Plant performance, dioxygenase-expressing rhizosphere bacteria, and biodegradation of weathered hydrocarbons in contaminated soil

Two greenhouse pot experiments were conducted to investigate the potential of 13 plant species (grasses, cruciferes, legumes, herbs) to thrive in a long-term contaminated soil from a former manufactured gas plant (MGP) site, to promote the proliferation of total and aromatic ring dioxygenase-expressing bacteria (ARDB) in the root zone, and to foster the biodegradation of petrol hydrocarbons (PHCs) and polycyclic aromatic hydrocarbons (PAHs). PHCs at 23200 mg kg(-1) and PAHs at 2194 mg kg(-1) reduced seed germination, plant survival, and shoot yields for most plants. Total bacteria and ARDB were generally more abundant in contaminated soil and were most numerous in the rhizosphere of mustard. During 68 d, the loss of total petrol hydrocarbons (TPHs) and total US EPA priority PAHs (TPAHs) was greatest in soil planted with hemp and mustard. Pea, cress, and pansy increased the amounts of PAHs extracted from soil, including an almost 60% increase for dibenzo(ah)anthracene. Plants may enhance the chemical extractability and perhaps biological availability of initially unextractable molecules.     

Bacterial leaching of metals from sewage sludge by indigenous iron-oxidizing bacteria

Bioleaching of metals can be achieved in sewage sludge using Thiobacillus ferrooxidans, which obtains its energy requirements from the oxidation of added ferrous iron. The purpose of this study was to verify the presence of indigenous T. ferroxidans and to evaluate their adaptive capacity and leaching potential. Nineteen sludges (primary, secondary, aerobically and anaerobically digested, oxidation pond) were tested and all of them contained indigenous iron-oxidizing bacteria. The acclimation of these organisms by successive transfers allowed a rise of sludge redox potential over 450 mV and a decrease of sludge pH between 3.8 and 2.2 over a 10-day incubation period. The metal solubilization efficiencies were Cd: 55-98%, Cr: 0-32%, Cu: 39-94%, Mn: 71-98%, Ni: 37-98%, Pb: 0-31% and Zn: 66-98%, were reached with these indigenous strains. The results obtained show that the metal bioleaching may be easily realized by direct acclimation of sludge microflora.     

Aerobic biodegradation of amines in industrial saline wastewaters

The treatment of hypersaline wastewaters represents a challenge since high salt concentrations disrupt bacteria present in normal biological treatments. This study was conducted to determine the fate of amines in two hypersaline wastewaters obtained from an industrial treatment plant processing influents with 3% and 7% of NaCl. The compounds were aniline (ANL), 4,4′-methylenedianiline (4,4′-MDA), cyclohexylamine (CHA), N-(2-aminoethyl)ethanolamine (AEA), N,N-diethylethanolamine (DEA), N,N-bis(2-hydroxyethyl)methylamine (MDEA), and tris(2-hydroxyethyl)amine (TEA). Mixtures of these chemicals with a mixed liquor suspended solids concentration of 1000 mg L⁻¹ were prepared at two salinities (3% and 7% NaCl). Ethanolamines were readily biodegraded at both salinities, following first-order kinetics with half-lives ranging between 10 and 58 h. Hydroxyl groups present in the ethanolamines had a positive impact on the biodegradation. Salinity did not affect the biodegradation rate of TEA and MDEA, whereas AEA and DEA degraded faster in 3% NaCl. After 48 h, CHA was metabolized within a 24-h period in 3% NaCl, while no degradation was observed in 7% NaCl. ANL exhibited lag phases in both salinities and, in the following 24-h period, ANL concentrations dropped 40% and disappeared after 48 h. 4,4′-MDA degraded in 3% NaCl (half-life of 123 h) and remained unaltered after 120 h in 7% NaCl.     

微生物浸取废弃电路板粉末中的铜

以单质硫为能源物质,城市污水厂污泥为菌株来源及培养基主要成分来培养氧化硫硫杆菌.取100 mL氧化硫硫杆菌菌液用于浸取15 g废弃电路板粉末中的铜,反应到顶设时间后进行固液分离,另取100 mL氧化硫硫杆菌菌液用于继续浸取剩余固体中的铜,考察不同浸取频次对铜累计浸取率的影响.研究结果表明,随着浸取频次的增加,铜累计浸取率逐渐提高.耗时24 d,浸取频次分别为3、4、6、12、24次中.浸取24次的铜累计浸取率最高,为93.69%,其次是浸取12次的,铜累计浸取率为91.18%.虽然浸取24次的铜累计浸取率比浸取12次的高,但是前者在耗时24 d后产生的浸取液(2.4 L)是后者(1.2 L)的2倍,考虑到微生物培养及后续处理成本,所以最佳浸取频次为12次.     

Surfactant-enhanced biodegradation of crude oil by mixed bacterial consortium in contaminated soil

This study evaluated the effects of two surfactants (i.e., Tween 80 and SDS) on biodegradation of crude oil by mixed bacterial consortium in soil-aqueous system. The mixed bacterial consortium was domesticated from the activated sludge of cooking plant through a progressive domestication process. High-throughput sequencing analysis revealed that Rhodanobacter sp. was the dominant bacteria. The higher CMC_eff value for two surfactants was observed in soil-aqueous system compared with that in aqueous system, which was likely due to their adsorption onto soil particles. Either Tween 80 or SDS can be utilized as carbon source and promote the growth of mixed bacterial consortium. Further findings evidenced that the degradation of crude oil can be enhanced by adding either Tween 80 or SDS. The performance of Tween 80 was generally superior to SDS for the crude oil degradation. The highest crude oil degradation efficiency was 42.2 and 31.0% under the conditions of 5 CMC_eff of Tween 80 and 2 CMC_eff of SDS, respectively. Furthermore, the degradation efficiency of crude oil in remediation experiment (i.e., 77%) evidenced that the integration of adding Tween 80 and inoculating mixed bacterial consortium was effective for crude oil-contaminated soil decontamination.     

Extensive biodegradation of polychlorinated biphenyls in Aroclor 1242 and electrical transformer fluid (Askarel) by natural strains of microorganisms indigenous to contaminated African systems

Evidence for substantial aerobic degradation of Aroclor 1242 and Askarel fluid by newly characterized bacterial strains belonging to the Enterobacter, Ralstonia and Pseudomonas genera is presented. The organisms exhibited degradative activity in terms of total PCB/Askarel degradation, degradation of individual congeners and diversity of congeners attacked. Maximal degradation by the various isolates of Askarel ranged from 69% to 86% whereas, Aroclor 1242, with the exception of Ralstonia sp. SA-4 (9.7%), was degraded by 37% to 91%. PCB analysis showed that at least 45 of the representative congeners in Aroclor 1242 were extensively transformed by benzoate-grown cells without the need for biphenyl as an inducer of the upper degradation pathway. In incubations with Aroclor 1242, no clear correlation was observed between percentage of congener transformed and the degree of chlorination, regardless of the presence or absence of biphenyl. Recovery of significant but nonstoichiometric amounts of chloride from the culture media showed partial dechlorination of congeners and suggested production of partial degradation products. Addition of biphenyl evidently enhanced dechlorination of the mixture by some isolates. With the exception of Ralstonia sp. SA-5, chloride released ranged from 24% to 60% in the presence of biphenyl versus 0.35% to 15% without biphenyl.     

Polychlorinated biphenyls in small mammals from contaminated landfill sites

PCBs in small mammals living in a contaminated landfill site varied in both concentration and congener composition, reflecting both the feeding strategy of each species and the chlorination of the congeners. Body concentrations of SigmaPCB on a 1:1:1 Arochlor (1242:1254:1260) basis gave a rank order of Sorex araneus > Apodemus sylvaticus > Microtus agrestis. Comparisons with data for other PCB-contaminated sites suggest that the SigmaPCB values in S. araneus from the landfill site may be of sufficient magnitude to inhibit reproductive capability and to cause other major organ dysfunction. There were also inter-specific differences in the whole body concentrations of the individually quantified congeners. For S. araneus, the rank order of concentrations of the selected ICES 7 marker PCB congeners was: No. 153>138>180>118>28>101>52. In M. agrestis the rank order was: No. 28>118>153>138>180, 52>101. The congener order for A. sylvaticus differed from both S. araneus and M. agrestis, but was more similar to the latter, being: No. 153>138>118>180>28>52, 101. The contribution of the different congeners to SigmaPCB in the mammals reflects the degree of chlorination of different congeners but varies with feeding strategy of the species. In the insectivorous S. araneus, heavily chlorinated congeners (Nos 153, 138 and 180) are most abundant, whereas the herbivore, M. agrestis showed congeners Nos 28 and 118 to be present in the highest amounts, whilst the equivalent pattern for the more omnivorous A. sylvaticus was intermediate between S. araneus and M. agrestis. The high concentrations of PCBs in S. araneus relative to the other species, suggests that it may serve as a useful biomarker of terrestrial environmental pollution by organochlorines.     

Aerobic biodegradation of dichloroethylenes in surface and subsurface soils

Laboratory studies were conducted to examine the aerobic biodegradation of dichloroethylenes (cis-1,2-DCE, trans-1,2-DCE and 1,1-DCE) in soil and groundwater. Authentic surface and subsurface materials with no reported DCE exposure history were used. All DCE isomers were observed to biodegrade to varying degrees in the soils examined. Use of radiolabeled [14C] test chemicals allowed correlation of DCE disappearance with mineralization to 14CO2. Study results indicate that naturally occurring microorganisms in soil and groundwater are capable of degrading cis-1,2-, trans-1,2- and 1,1-DCE without laboratory supplementation of exogenous organic nutrients, or previous exposure history. The data further suggest that degradative potential may vary with soil type, DCE isomer structure, and concentration.     

三氯乙烯在苯酚菌中的共代谢降解性能研究

通过生物降解实验考察三氯乙烯(TCE)在苯酚驯化微生物中的共代谢降解性能,并进行动力学分析。结果表明,苯酚是TCE-苯酚共代谢过程必不可少的共代谢基质;TCE的共代谢降解与苯酚和TCE初始浓度有关。TCE在降解初期会出现一个短暂的迟滞期,TCE的大量降解要在苯酚被利用后才发生;高质量浓度TCE(>9mg/L)对共代谢降解有抑制作用。苯酚/TCE(质量比)在10～15以上时,苯酚菌对TCE的去除率较大。Haldane模型能够很好地拟合苯酚和TCE的比降解速率。动力学分析表明,微生物对苯酚的亲和力要大于TCE,苯酚对TCE共降解具有竞争性抑制作用,TCE对微生物存在毒性抑制作用;结果证实了生物降解实验的结论。     

Aerobic biodegradation of organotin compounds in activated sludge batch reactors

The biodegradation behavior of four organotin (OT) compounds, namely tributyltin (TBT), dibutyltin (DBT), monobutyltin (MBT) and triphenyltin (TPhT), was studied in lab-scale activated sludge batch reactors. The activated sludge was spiked with the OT compounds at a level of 100 microg l(-1) as Sn. Determination of the OT compounds by GC-FPD after ethylation in the dissolved and particulate phase revealed that 24 h after the start of the experiments, almost the total of OT compounds has been removed from the dissolved phase and is associated with the suspended solids. Calculation of mass balance in batch reactors showed that OT compounds biodegradation was performed via a sequential dealkylation process. Removals due to biodegradation were differentiated according to the parent compound. In experiments with non-acclimatized biomass, a percentage of 27.1, 8.3, 73.8 and 51.3 was still present as TBT, DBT, MBT and TPhT, respectively, at the end of the experiment (18th day). Half-lives (t1/2) of 10.2 and 5.1 days were calculated for TBT and DBT, respectively, whereas apparent t1/2 values could not be determined for MBT and TPhT (t1/2>18 days). The capacity of activated sludge to biodegrade OT compounds in the absence of supplemental substrate indicated that these compounds can be metabolized as single sources of carbon and energy in activated sludge systems. Excluding TBT, the presence of low concentrations of supplemental substrate did not affect the biodegradation potential of activated sludge. The acclimatization of biomass on OT compounds enhanced significantly biodegradation, resulting in significant decreases of half-lives of OT compounds. As a result in the presence of acclimatized biomass, half-lives of 1.4, 3.6, 9.8 and 5.0 days were calculated for TBT, DBT, MBT and TPhT, respectively.     

Efficacy of indigenous soil microbes in arsenic mitigation from contaminated alluvial soil of India

Selected arsenic-volatilizing indigenous soil bacteria were isolated and their ability to form volatile arsenicals from toxic inorganic arsenic was assessed. Approximately 37 % of AsIII (under aerobic conditions) and 30 % AsV (under anaerobic conditions) were volatilized by new bacterial isolates in 3 days. In contrast to genetically modified organism, indigenous soil bacteria was capable of removing 16 % of arsenic from contaminated soil during 60 days incubation period while applied with a low-cost organic nutrient supplement (farm yard manure).     

Biodegradation of C.I. Acid Red 1 by indigenous bacteria <Emphasis Type="Italic">Stenotrophomonas</Emphasis> sp. BHUSSp X2 isolated from dye contaminated soil

A significant proportion of xenobiotic recalcitrant azo dyes are being released in environment during carpet dyeing. The bacterial strain Stenotrophomonas sp. BHUSSp X2 was isolated from dye contaminated soil of carpet industry, Bhadohi, India. The isolated bacterial strain was identified morphologically, biochemically, and on the basis of 16S rRNA gene sequence. The isolate decolorized 97 % of C.I. Acid Red 1 (Acid RED G) at the concentration of 200 mg/l within 6 h under optimum static conditions (temperature ?35 °C, pH 8, and initial cell concentration 7?×?10⁷ cell/ml). Drastic reduction in dye degradation rate was observed beyond initial dye concentration from 500 mg/l (90 %), and it reaches to 25 % at 1000 mg/l under same set of conditions. The analysis related to decolorization and degradation was done using UV-Vis spectrophotometer, HPLC, and FTIR, whereas the GC-MS technique was utilized for the identification of degradation products. Phytotoxicity analysis revealed that degradation products are less toxic as compared to the original dye.     

微曝气阻隔技术处理污染场地土壤气中苯的研究

以北京某焦化厂苯精制车间废弃场地为研究对象,挖开10m×10m×4m的污染土基坑作为风险管控区,并进行微曝气阻隔技术处理,以期实现风险管控区的土壤气苯污染管控。结果表明,不曝气时,土壤中微生物主要为厌氧微生物。曝气1次不足以改变深层土壤的厌氧状态,对浅层土壤而言无法达到好氧微生物所需的足够O2,使得苯既不能被厌氧降解也不能被好氧降解,反而因扰动作用加速了苯的逸出,使得苯含量不减反增。再曝气3次后,各土层O2含量均大幅增加,污染土层中苯质量浓度降至0.79mg/m3,而清洁土层中苯质量浓度全部降到了0.22mg/m3以下,能够满足《污染场地挥发性有机物调查与风险评估技术导则》(DB11/T 1278—2015)土壤气中苯的筛选值(3.95mg/m3)。     

Alkane biodegradation and dynamics of phylogenetic subgroups of sulfate-reducing bacteria in an anoxic coastal marine sediment artificially contaminated with oil

For 503 days, unoiled control and artificially oiled sediments were incubated in situ at 20m water depth in a Mediterranean coastal area. Degradation of the aliphatic fraction of the oil added was followed by GC-MS. At the same time, terminal restriction fragment length polymorphism (T-RFLP) of 16S rRNA encoding genes was used to detect dynamics in the sulfate-reducing bacteria (SRB) community in response to the oil contamination. Specific polymerase chain reaction (PCR) primer sets for five generic or suprageneric groups of SRB were used for PCR amplification of DNA extracted from sediments. During the experiment, hydrocarbons from C(17) to C(30) were significantly degraded even in strictly anoxic sediment layers. Of the five SRB groups, only two groups were detected in the sediments (control and oiled), namely the Desulfococcus-Desulfonema-Desulfosarcina-like group and the Desulfovibrio-Desulfomicrobium-like group. Statistical analysis of community patterns revealed dynamic changes over time within these two groups following the contamination. Significant differences in community patterns were recorded in artificially oiled compared with control sediments. Cloning and sequencing of 16S rRNA encoding genes performed after 503 days showed that many of the most abundant sequences were closely related to hydrocarbonoclastic SRB which could have played an active role in the observed biodegradation of aliphatic hydrocarbons. Results from the present study provide useful information on the dynamics of dominant SRB in heavily oil-contaminated sediments and their potential for anaerobic biodegradation for the treatment of spilled oil in anoxic marine environments.     

Comparison of bioassays by testing whole soil and their water extract from contaminated sites

The harmful effects of contaminants on the ecosystems and humans are characterised by their environmental toxicity. The aim of this study was to assess applicability and reliability of several environmental toxicity tests, comparing the result of the whole soils and their water extracts. In the study real contaminated soils were applied from three different inherited contaminated sites of organic and inorganic pollutants. The measured endpoints were the bioluminescence inhibition of Vibrio fischeri (bacterium), the dehydrogenase activity inhibition of Azomonas agilis (bacterium), the reproduction inhibition of Tetrahymena pyriformis (protozoon), and Panagrellus redivivus (nematode), the mortality of Folsomia candida (springtail), the root and shoot elongation inhibition of Sinapis alba (plant: white mustard) and the nitrification activity inhibition of an uncontaminated garden soil used as "test organism". Besides the standardised or widely used methods some new, direct contact ecotoxicity tests have been developed and introduced, which are useful for characterisation of the risk of contaminated soils due to their interactive nature. Soil no. 1 derived from a site polluted with transformer oil (PCB-free); Soil no. 2 originated from a site contaminated with mazout; Soil no. 3 was contaminated with toxic metals (Zn, Cd, Cu, Pb, As). In most cases, the interactive ecotoxicity tests indicated more harmful effect of the contaminated soil than the tests using soil extracts. The direct contact environmental toxicity tests are able to meet the requirements of environmental toxicology: reliability, sensibility, reproducibility, rapidity and low cost.