Biogeographical differences between the two Capra pyrenaica subspecies, C. p. victoriae and C. p. hispanica, inhabiting the Iberian Peninsula: Implications for conservation

The Iberian wild goat (Capra pyrenaica), an endemic species to the Iberian Peninsula, was represented in the past by four subspecies. Currently, the conservation status of the recognized subspecies - C. p. hispanica and C. p. victoriae - is quite different, being the former broadly distributed while the latter inhabits fewer and smaller areas. In this global context, our specific aims were to assess the biogeographical relationships, similarities and differences between the Iberian wild goat subspecies, and to evaluate their conservation status from a biogeographical perspective. We modelled the ecogeographical favourability for each subspecies, and also for the whole species, and we comparatively analyzed the spatial relationships among models in order to detect differential biogeographical patterns. Our results showed a differential pattern for each Iberian wild goat subspecies, and thus each one should be independently considered when designing management strategies. The distribution of C. p. victoriae was closely related to climatic conditions, thus it is highly sensitive to variations in climatic characteristics. Finally, from the perspective of metapopulation theory, and according to the geographical structure of their favourable areas, C. p. victoriae is at higher risk than C. p. hispanica. We discuss the implications of our results for species/subspecies conservation, and highlight the importance of conservation biogeography.     

Individual trophic specialisation and niche segregation explain the contrasting population trends of two sympatric otariids

Individual specialisation is increasingly recognised to be an ecological and evolutionary process having important consequences for population dynamics of vertebrates. The South American fur seal (SAFS) and the South American sea lion (SASL) are two otariid species with similar ecology that coexist in sympatry in the Uruguayan coast. These two species have contrasting trends and widely different population sizes. The underlying reasons for these population trends, unique in their geographical ranges, remain unknown. We studied the foraging ecology of these otariid species over 2 years at the individual- and population levels using the isotopic ratios (δ¹³C–δ¹⁵N) in whiskers of both sexes. We compared the isotope ratios between species and sexes and used several metrics to characterise the degree of overlap and distinctiveness in the use of isotopic niche space at the individual- and population levels. Interspecific trophic niche overlap was minimal, thus ruling out interspecific competition as the cause for the contrasting population trends of both species. At the intraspecific level, both species had sexual segregation in their foraging areas, but each species had a large overlap in the isotopic niches between sexes. While SAFS had a wider niche and generalist individuals, SASL had the narrower niche with a higher degree of individual specialisation. Behavioural constraints during the breeding season, intraspecific competition and a major dependence on resources of the Uruguayan coastal shelf may explain why SASL had a higher trophic individual specialisation and a larger vulnerability in a heavily exploited habitat by fisheries and, by consequence, a locally declining population trend.     

The derivation of species response curves with Gaussian logistic regression is sensitive to sampling intensity and curve characteristics

We investigated quantitatively the sensitivity of plant species response curves to sampling characteristics (number of plots, occurrence and frequency of species), along a simulated pH gradient. We defined 54 theoretical unimodal response curves, issued from combinations of six values for optimum (opt = 3, 4, …, 8), three values for tolerance (tol = 0.5, 1.0, and 1.5, sensu ter Braak and Looman [ter Braak, C.J.F., Looman, C.W.N., 1986. Weighted averaging, logistic regression and the Gaussian response model. Vegetatio 65, 3–11]), and three values for maximum probability of presence (p_max = 0.05, 0.20, and 0.50). For each of these 54 theoretical response curves, we built artificial binary data sets (presence/absence) to test the influence of species occurrence, frequency, or number of available plots. With real data extracted from EcoPlant, a phytoecological database for French forests [Gégout, J.-C., Coudun, Ch., Bailly, G., Jabiol, B., 2005. EcoPlant: a forest sites database linking floristic data with soil characteristics and climatic conditions. J. Veg. Sci. 16, 257–260], we compared the ecological response of 50 plant species to soil pH, based first on a small data set (100 randomly sampled plots), and then based on the whole data set available (3810 plots).     

Testing hypotheses on shape and distribution of ecological response curves

Niche theory with hypotheses on shape and distribution of ecological response curves is used in the studies of resource sharing of competing plant species. Predictions based on theory should be applicable when, e.g., effects of competing species on the ecological tolerances are assessed or species’ diversity along a resource gradient is evaluated. We studied the ecological response curves of competing plant species along a resource gradient in boreal forests. The study was based on nation-wide soil and vegetation data collected from 455 sample plots on boreal forests in Finland. Species response curves along a soil fertility gradient (in terms of C/N ratio) were estimated using generalized additive models. Distribution of species optima and the relationship of niche width and skewness to the location of the optimum were analyzed with new bootstrap tests. The developed tests can account for the effects of truncation observed in the response curves of several species and for the uneven distribution of observations on the gradient.The estimated response curves of the major field layer species of boreal forests were not evenly distributed along soil C/N gradient. The density of optima peaked with relatively high nitrogen availability. Species with optima at low nitrogen availability had relatively broad realized niches. Niche width was negatively correlated with the density of optima. Species optima were packed and niches were narrow at high resource levels. This result suggests that a greater number of more specialized species can occur and interspecific competition decreases niche widths at high resource levels. Species were packed in the gradient where the C/N ratio was lower than 25, i.e., in conditions where nitrification can take place. This indicates that the majority of the vascular plants of boreal forests are favoured by the availability of NO₃⁻. Those few species thriving at high C/N ratios have broader realized niches.     

Modelling the effects of extreme events on the dynamics of the amphipod Corophium orientale

The brackish water amphipod Corophium orientale is the dominant macroinvertebrate species in the upper Mira estuary, a small mesotidal system located in the southwest coast of Portugal. As climate changes will increase the frequency and intensity of extreme events such as floods and droughts, these will have a negative effect on benthic estuarine invertebrates, namely C. orientale. In order to understand the effects of these events on C. orientale, a dynamic model, based on published information and calibrated with field data, was developed and different scenarios were tested.For model construction, the annual development of three cohorts of C. orientale, their growth rates, and the establishment of the timing of each cohort rise and extinction are introduced. This structure can be repeated indefinitely, for years, and few parameters are required. The model simulations highlight the need for refuge areas that enable a fast recovery of the amphipod population after an extreme event and the recolozination of the affected areas.     

Validation of a multispecies forest dynamics model using 50-year growth from Eucalyptus forests in eastern Australia

One of the key problems confronting ecological forecasting is the validation of computer models. Here we report successful validation of a forest dynamics model Ecosystem Dynamics Simulator (EDS), adapted from the JABOWA-II forest succession model. This model and many variants derived from it have successfully simulated growth dynamics of uneven-aged mixed forests under changing environment with a moderate amount of input data. But rarely are adequate time-series data available for quantitative model validation. This study tested the performance of EDS in projecting the tree density, tree diameter at breast height (dbh), tree height, basal area and aboveground biomass of uneven-aged, mixed species sclerophyll forests in St. Mary state forests of eastern Australia. The test data were collected between 1951 and 2005. Every tree was uniquely numbered, tagged and measured in consecutive re-measurements. Projected growth attributes were compared with those observed in an independent validation dataset. The model produced satisfactory projections of tree density (91.7%), dbh (92.3%), total tree height (82.8%), basal area (89.3%) and aboveground biomass (87.6%) compared to the observed attributes. These results suggest that the EDS model can provide reasonable capability in projecting growth dynamics of uneven-aged, mixed species sclerophyll forests.     

Shifts of the feeding niche along the size dimension of three juvenile fish species in a tidal mudflat in southeastern Brazil

The diet of three cooccurring abundant fish species (Eucinostomus argenteus, Diapterus rhombeus and Micropogonias furnieri) and its ontogenetic changes in a mudflat area of a tropical bay in southeastern Brazil were described. The working hypothesis is that these three species shift the use of the available resources throughout their growth. Early juveniles of D. rhombeus and M. furnieri fed mainly on Cyclopoida copepods, shifting to Nematoda (D. rhombeus) and errant Polychaeta (M. furnieri) as they increased in size. In contrast, the early life stages of E. argenteus fed mainly on errant Polychaeta and Calanoida copepods, with increasing niche breadth as they grew. The relative degree of individual specialisation in resource use indicated specialism for M. furnieri and E. argenteus, and generalism for D. rhombeus. The largest intraspecific overlap was found for the smallest size classes. Niche breadth increased during ontogeny, with a higher average niche breadth at lower prey length/predator length ratios. Therefore, species-specific differences in diet across the resource gradient and increased niche breadth during ontogeny characterised the shifts of resource use, and probably account for the coexistence of these species in zones of sympatry in mudflat areas of southeastern Brazil.     

Coexisting generalist scavengers occupy different feeding niches

Generalist scavengers are perceived to exhibit broad feeding niches, and therefore, it is predicted that coexisting generalist scavengers should exhibit extensive food niche overlap. However, ecological theory suggests that no two species can coexist while using the same limited resources in the same manner because competitive differences between the species will result in one species being outcompeted. Thus, some differentiation of the diets of coexisting generalist scavengers must exist in order to avoid competitive exclusion. In this study, I analyzed the feeding niches of two species of coexisting generalist scavengers (hermit crabs; Clibanarius digueti and Paguristes perrieri) to determine whether the species overlap in their: (1) preferred food items and (2) past diets. Food choice experiments conducted in the field showed that the species’ preferences for the food items offered largely overlapped. However, gut content and stable isotope analyses of collected specimens revealed significant differences in the past diets of the species. These analyses suggest that C. digueti consumes more photosynthetic materials than P. perrieri. The results suggest that the species differentiate their diets despite both feeding opportunistically on carrion and detritus washed into the intertidal zone by the tides.     

Spatial distribution patterns of the gorgonians <Emphasis Type="Italic">Eunicella singularis</Emphasis>, <Emphasis Type="Italic">Paramuricea clavata</Emphasis>, and <Emphasis Type="Italic">Leptogorgia sarmentosa</Emphasis> (Cape of Creus,Northwestern Mediterranean Sea)

Most of the current knowledge on Mediterranean gorgonians is restricted to investigations of those populations found within shallow sublittoral waters, and only limited data are available for populations located below scuba depth. To overcome this lack of information, the occurrence and abundance of the gorgonians Eunicella singularis, Paramuricea clavata, and Leptogorgia sarmentosa were investigated in northwestern Mediterranean benthic communities over a wide geographical (60 km of coastline) and bathymetrical (0–70 m deep) extent using a remotely operated vehicle (ROV). The greatest occurrence and abundances of E. singularis and P. clavata were concentrated in areas that are directly exposed to strong near-bottom currents. E. singularis was the most common and abundant species and displayed great plasticity and amplitude in its environmental preferences. Conversely, P. clavata showed a very patchy distribution that was associated with vertical rocky walls. Only isolated colonies of L. sarmentosa were observed in the study area. Hot spots of abundance of E. singularis and P. clavata were identified below a depth of 40 m, which demonstrates the importance of studying the distribution of benthic species over a wide geographical and bathymetrical extent.     

The ecological principle of evolutionary reconstruction as illustrated by marine animals

Analysis of the evolution, distribution and ecology of marine prosobranchs of the genera Neptunea and Littorina and amphipods of the genera Anisogammarus and Gammarus demonstrates the possibilities of ecological and palacoecological methods in composing evolutionary reconstructions. A comparative study of historical climate changes and of palaeogeography in areas inhabited by certain taxonomic groups, coupled with information on the distribution and ecology of species belonging to these groups, allows us to determine the time and locality of the origin of diverse biogeographical groups of species and to trace the routes of their further distribution, even in those organisms which have no fossil remains. Species dwelling under conditions which correspond historically to the most ancient climate of their dwelling area prove to be more primitive than species dwelling under newly-formed climatic conditions. For instance, subtropical species of the genera under consideration, in the Northwestern parts of the Pacific and Atlantic Oceans, have proved to be more ancient and primitive than species inhabiting the upper boreal Pacific and Atlantic waters and the Arctic Ocean. Therefore, the palaeoecological analysis of the historical development of faunas from different regions of the globe, combined with the application of the morphological principle, can significantly contribute to a more detailed and precise understanding of the processes and trends of evolution which compose the phylogenetic schemes of the taxonomic groups under discussion.     

Trophic ecology of large predatory reef fishes: energy pathways, trophic level, and implications for fisheries in a changing climate

Large predatory fishes are disproportionately targeted by reef fisheries, but little is known about their trophic ecology, which inhibits understanding of community dynamics and the potential effects of climate change. In this study, stable isotope analyses were used to infer trophic ecology of a guild of large predatory fishes that are targeted by fisheries on the Great Barrier Reef, Australia. Each of four focal predators (Plectropomus leopardus, Plectropomus maculatus, Lethrinus miniatus and Lutjanus carponotatus) was found to have a distinct isotopic signature in terms of δ¹³C and δ¹⁵N. A two-source mixing model (benthic reef-based versus pelagic) indicated that P. leopardus and L. miniatus derive the majority (72 and 62 %, respectively) of their production from planktonic sources, while P. maculatus and L. carponotatus derive the majority (89 and 74 %, respectively) of their production from benthic reef-based sources. This indicates that planktonic production is important for sustaining key species in reef fisheries and highlights the need for a whole-ecosystem approach to fisheries management. Unexpectedly, there was little isotopic niche overlap between three of four focal predators, suggesting that inter-specific competition for prey may be low or absent. δ¹⁵Nitrogen indicated that the closely related P. leopardus and P. maculatus are apex predators (trophic level > 4), while δ¹³C indicated that each species has a different diet and degree of trophic specialisation. In view of these divergent trophic ecologies, each of the four focal predators (and the associated fisheries) are anticipated to be differentially affected by climate-induced disturbances. Thus, the results presented herein provide a useful starting point for precautionary management of exploited predator populations in a changing climate.     

A system-dynamic model on the competitive growth between Potamogeton malaianus Miq. and Spirogyra sp.

A system-dynamic model has been built to evaluate the competition between submerged macrophytes Potamogeton malaianus Miq. (PM) and filamentous green algae Spirogyra sp. (SP). The data background is based on a spring–summer and an autumn–winter experiment carried out in artificial field ponds. The experiments had the aim to acquire a knowledge base necessary to a successful restoration of submerged macrophyte vegetation in Lake Taihu, China by use of P. malaianus Miq. The model mainly focuses on variations in water volume; biomass dynamics of P. malaianus Miq., Spirogyra sp. and zoobenthos; nutrients cycling between water column, P. malaianus Miq., Spirogyra sp., zoobenthos, detritus and sediment. Sixteen state variables are included in the model: biomass of P. malaianus Miq., Spirogyra sp. and zoobenthos; nitrogen in sediments, detritus, in P. malaianus Miq., in Spirogyra sp. and zoobenthos; total dissolved nitrogen; phosphorus in sediments, detritus, in P. malaianus Miq., in Spirogyra sp. and in zoobenthos; total dissolved phosphorus, and water volume of the experiment pond. The calibration and validation of the model show a good accordance with the results of the spring–summer experiment and the autumn–winter experiment.     

Geochemical and ecological significance of soil lipids under Rhododendron ponticum stands

The bio-geographical significance of Rhododendron ponticum spp. baeticum (Ericaceae) as a relict species is well recognized. However, out of its native habitat it is an invasive exotic considered a major threat to natural ecosystems in areas of Atlantic Western Europe. The studies on the impact of Rhododendron influence on soil organic matter composition and associated ecological implications, i.e. presence of bioactive compounds with ecological significance, are limited. This work describes the soil lipid assemblage in three sites under Rhododendron stands and adjacent sites with deciduous oak (Quercus canariensis), both in their native habitats in Southern Spain (Sierra de Luna, Cádiz). The results are discussed in terms of organic matter dynamics and the presence of molecules that may be associated with Rhododendron invasive success. The soils are acid Xerochrepts formed on siliceous sands. Composite soil samples were taken at two depths (0?C10?cm and 10?C20?cm) and soxhlet extracted with a dichloromethane-methanol mixture (3:1). Soil lipid assemblage was studied by GC/MS after fractionation and appropriate derivatization of extracts. The qualitative chemical composition of soil extractable lipids under Rhododendron is reported here for the first time. Our results show that soil n-alkane and fatty acid distributions are compatible with an input from plant epicuticular waxes, as well as with the occurrence of selective preservation of long-chain fatty acids with depth. The pattern of short-chain n-alkanes found in surface samples indicates an anthropogenic contamination threat from nearby industrialized areas of ??Campo de Gibraltar??. The presence of branched iso and anteiso C₁₅ and C₁₇, ??-hydroxy fatty acids and the sterol brassicasterol points to high microbial soil activity. Finally, the pentacyclic triterpenes taraxerone and taraxerol were detected in soils with Rhododendron but not with Quercus. These are known bio-active plant compounds and could be related with the effectiveness of Rhododendron as an invasive exotic species.     

Ecological niche modeling of customary medicinal plant species used by Australian Aborigines to identify species-rich and culturally valuable areas for conservation

Customary medicinal plant species used by Australian Aborigines are disappearing rapidly with its associated knowledge, due to the loss of habitats. Conservation and protection of these species is important as they represent sources of novel therapeutic phytochemical compounds and are culturally valuable. Information on the spatial distribution and use of customary medicinal plants is often inadequate and fragmented, posing limitations on the identification and conservation of species-rich areas and culturally valuable habitats.In this study, the habitat suitability modeling program, MaxEnt, was used to predict the potential ecological niches of 431 customary medicinal plant species, based on bioclimatic variables. Specimen locality records were obtained from the Global Biodiversity Information Facility (GBIF) data portal and from Australia's Virtual Herbarium (AVH).Ecological niche models of 414 predicted species, which had 30 or more occurrence points, were used to produce maps indicating areas that were ecologically suitable for multiple species (concordance of high predicted ecological suitability) and having cultural values. For the concordance map, individual species niche models were thresholded and summed. To derive a map of culturally valuable areas, customary medicinal uses from Customary Medicinal Knowledgebase (CMKb) (www.biolinfo.org/cmkb) were used to weight individual species models, resulting in a value within each grid cell reflecting its cultural worth.Even though the available information is scarce and fragmented, our approach provides an opportunity to infer areas predicted to be suitable for multiple species (i.e. concordance hotspots) and to estimate the cultural value of a particular geographical area. Our results also indicate that to conserve bio-cultural diversity, comprehensive information and active participation of Aboriginal communities is indispensable.     

Causes of habitat divergence in two species of agamid lizards in arid central Australia

The deserts of central Australia contain richer communities of lizards than any other arid regions, with the highest diversity occurring in sand dune habitats dominated by hummock-forming spinifex grasses. To investigate the mechanisms that permit coexistence, we studied two species of coexisting agamid lizards that exhibit striking divergence in their use of habitat in the Simpson Desert of central Australia. Here, the military dragon Ctenophorus isolepis is restricted primarily to sites providing > 30% cover of hard spinifex Triodia basedowii, whereas the central netted dragon C. nuchalis occurs in areas with much sparser (< 10%) cover. We constructed four mechanistic models to explain this pattern and then derived hypotheses to test them. One hypothesis, that competition restricts each species to its preferred habitat, was rejected after dyad encounters in field enclosures failed to elicit any habitat shift or any overt interactions between the species. Our next hypotheses were that each species exhibits preferences for different thermal environments or different prey types and that each selects the habitats that maximize access to them. Both were supported. C. isolepis preferred lower temperatures when active and specialized in eating ants < 5 mm long and selected spinifex-dominated areas where these requirements were met. In contrast, C. nuchalis preferred higher temperatures and a diversity of prey, both of which were available mostly in open areas. Finally, we used plasticine models to test the hypothesis that each species faced lower risk of predation in its selected habitat. This was partly supported, as models of both species were attacked more often in the open than under spinifex cover. The results show that habitat divergence occurs along several, probably covarying, niche axes. We suggest that different levels of spinifex cover provide the template for a broad range of ecological interactions, allowing lizard species to partition biotic and abiotic resources and achieve the extraordinarily high levels of local diversity that are observed.     

Importance of macroalgal fields as coral reef fish nursery habitat in north-west Australia

Macroalgal fields are a feature of the shallow tropical benthos, yet their importance for coral reef fish population dynamics remains poorly understood. The abundance of fish recruits was recorded using underwater visual census at six macroalgal and 11 coral reef sites in the Montebello and Barrow Islands. Surveys identified 6,935 individual recruit fish from 105 species, 54 genera and 20 families. Of these, 1,401 recruits from 48 species, 31 genera and 14 families were observed in macroalgal sites. Sixteen of the 105 recruit species (15.2 %) were observed exclusively at macroalgal sites. Forty-two (87.5 %) of these species have been observed as adults on adjacent coral reefs. Species composition of fish recruits differed significantly between the two habitats. Corallivore, small omnivore and zooplanktivore recruits had significantly higher numbers in the coral sites, while the results clearly demonstrate that juveniles, within the genera Lethrinus and Choerodon, as well as large algal croppers, are predominantly found at macroalgal (74–100 %) rather than coral-dominated sites. High-canopy macroalgae cover was positively correlated with abundance of these taxa, particularly Lethrinids (r ² = 0.40). This study is the first to highlight the important attributes of tropical macroalgal fields and suggests that they have a similar role to seagrass meadows as essential juvenile habitat, thus warranting greater attention in conservation planning and ecological studies.