Spatially explicit modeling of overstory manipulations in young forests: Effects on stand structure and light

Young forests can be manipulated in diverse ways to enhance their ecological values. We used stem maps from two dense, second-growth stands in western Washington and a spatially explicit light model (tRAYci) to simulate effects of five silvicultural manipulations on diameter distribution, species composition, spatial patterning, and light availability. Each treatment removed 30% of the basal area, but differed in how trees were selected for removal. Three primary treatments were thin from below (removing the smallest trees), random thin (removing trees randomly), and gap creation (removing all trees in circles ∼1 tree height in diameter). Two additional treatments combined elements of these approaches: random ecological thin (a mixture of thin from below and random thin) and structured ecological thin (a mixture of thin from below and gap creation).     

Effects of climate change on moose populations: Exploring the response horizon through biometric and systems models

Interest in the response of moose to climate change has increased because of the potential role they play in the conservation of woodland caribou, and threatened loss to recreational and economic opportunities. The objective of this study is to develop a plausible, parsimonious, systems-level model of moose population dynamics that will be useful in exploring the response of moose populations to climate projections. The study begins with a statistical model of moose carrying capacity, which is then integrated into a systems-level model that predicts moose density based on explicit causal factors. Scenario analysis was conducted using a variety of assumptions concerning biotic and abiotic interactions, and under the A2 climate scenario all model scenarios predict a decline of moose density at the southern limits of the Ontario distribution and an increase at the northern extents. Predicted declines are a result of lower carrying capacity and higher heat stress, parasite loads and wolf predation. Given the sensitivity of the model to density-dependent factors, the indirect effect of parasites on decreased recruitment may have greater impact on moose than the direct effect of increased death rate. Results indicate that conservation planning for woodland caribou populations should account for possible increases in moose and wolf populations.     

Modelling the spatial population dynamics of the green oak leaf roller (Tortrix viridana) using density dependent competitive interactions: Effects of herbivore mortality and varying host-plant quality

Cyclic population dynamics of forest insects with periods of more than two generations have been discussed in relation to a variety of extrinsic and intrinsic forces. In the present study, we employed the selection pressure of density dependent competitive interactions according to Witting's equations (Witting, 2000) as driver for a discrete spatiotemporal model of the green oak leaf roller (Tortrix viridana). The model was successfully parameterised to rebuild the cyclic population dynamics of an empirical data set of a 30-year leaf roller monitoring in Russia. Our analysis focussed on the role of herbivore mortality and host plant food quality, which have a significant effect on T. viridana population dynamics. An additional egg or larvae mortality lowers population density and can lead to selection pressures that favour individuals with higher growth rate. This increased population growth rate can not only compensate the additional mortality, but also can lead to higher average moth abundances in subsequent generations. Furthermore, we analysed the effect of inter- and intraspecific variation in host plant quality on herbivore population dynamics and the spatial distribution of abundance and defoliation patterns. We found significant effects of the qualitative composition of a trees neighbourhood on the herbivore population of the respective tree. Also, the patchy damage patterns observable in reality have been reproduced by the present model. The applicability of the model approach and the putative genetic processes underlying Witting's model are discussed.     

Definition and calculation of uncertainty in ecological process models

We present a method of multi-criteria assessment for the analysis of process model uncertainty that combines analysis of model structure, parameters and data requirements. There are three components in calculation and definition of uncertainty.

(1)

Assessment criteria: Uncertainty in a process model is reduced as the model can simultaneously simulate an increased number of assessment criteria selected to test specific aspects of the theory being investigated, and within acceptable limits set for those criteria. This reduces incomplete specification of the model—the characteristic that a model may explain some, but not all, of the observed features of a phenomenon. The calculation required is computation of the Pareto set which provides the list of simultaneously achieved criteria within specified ranges.     

新疆中部天山雪岭云杉种群动态初步研究

雪岭云杉PiceaschrenkianaFisch.etMey在中部天山林区内分布于海拔1500m～2700m之间,形成一个垂直分布带。作者采用样方法进行调查,沿海拔梯度每隔100m选取两块样地(20m×20m),在海拔1500～2700m的雪岭云杉林内共选样地26块来调查中部天山雪岭云杉种群的年龄结构、密度和生物量动态。在所选样地内,调查所有雪岭云杉树木(h≥2m)的胸径并按5cm分成不同的径级,每一径级至少选取两棵树,每棵树在不同方向上钻取两个树芯,建立年龄-胸径方程推算样地内所有雪岭云杉树(h≥2m)的年龄;调查样地内所有幼苗(h<50cm)和幼树(50cm≤h<200cm)的高度并根据主干上轮枝数查数一定数目幼苗幼树的年龄,建立年龄-高度方程并推算样地内所有幼苗幼树的年龄。研究结果表明中部天山雪岭云杉种群的胸径、年龄结构和种群密度都呈倒-J型分布,种群生物量呈钟型分布,存活曲线基本介于DeeveyⅡ和DeeveyⅢ型之间。以上研究结果表明中部天山的雪岭云杉种群处于不断更新和稳定发展的时期。     

Integrating the Metapopulation and Habitat Paradigms for Understanding Broad-Scale Declines of Species

Abstract:  Caughley (1994) argued that researchers working on threatened populations tended to follow the "small population paradigm" or the "declining population paradigm," and that greater integration of these paradigms was needed. Here I suggest that two related paradigms exist at the broader spatial scale, namely the metapopulation paradigm and habitat paradigm, and that these two paradigms also need to be integrated if we are to provide sound management advice. This integration is not trivial, and I outline five problems that need to be addressed: (1) habitat variables may not measure habitat quality, so site-specific data on vital rates are needed to resolve the effects of habitat quality and metapopulation dynamics; (2) measurements of vital rates may be confounded by movements; (3) vital rates may be density dependent; (4) vital rates may be affected by genotype; and (5) vital rates cannot be measured in unoccupied patches. I reviewed papers published in Conservation Biology from 1994 to 2003 and found 41 studies that analyzed data from 10 or more sites to understand the factors limiting species' distributions. Five of the analyses presented were purely within the metapopulation paradigm, 14 were purely within the habitat paradigm, 17 involved elements of both paradigms, and 7 were theoretically ambiguous (2 papers presented 2 distinct analyses and were counted twice). This suggests that many researchers appreciate the need to integrate the paradigms. Only one study, however, used data on vital rates to resolve the effects of habitat quality and metapopulation dynamics (problem 1), and this study did not address problems 2–5. I conclude that more intensive research incorporating site-specific data on vital rates and movement is needed to complement the numerous analyses of distributional data being produced.     

Effects of density-dependent dispersal behaviours on the speed and spatial patterns of range expansion in predator-prey metapopulations

Dispersal can strongly affect the spatiotemporal dynamics of a species (its spread, spatial distribution and persistence). We investigated how two dispersal behaviours, namely prey evasion (PE) and predator pursuit (PP), affect the dynamics of a predator-prey system. PE portrays the tendency of prey avoiding predators by dispersing into adjacent patches with fewer predators, while PP describes the tendency of predators to pursue the prey by moving into patches with more prey. Based on the Beddington predation model, a spatially explicit metapopulation model was built to incorporate PE and PP. Numerical simulations were run to investigate the effects of PE and PP on the rate of spread, spatial synchrony and the persistence of populations. Results show that both PE and PP can alter spatial synchrony although PP has a weaker desynchronising effect than PE. The predator-prey system without PE and PP expanded in circular waves. The effect of PE can push the prey to distribute in a circular ring front, whereas the effect of PP can change the circular waves to anisotropic expansion. Furthermore, weak PE and PP can accelerate the spread of prey while strong and disproportionate intensities slow down the range expansion. The effects of PE and PP further enhance the population size, break down the spatial synchrony and promote the persistence of populations.     

The impact of fragmentation and density regulation on forest succession in the Atlantic rain forest

The Atlantic Rain Forest, an important biodiversity hot spot, has faced severe habitat loss since the last century which has resulted in a highly fragmented landscape with a large number of small forest patches (<100 ha). For conservation planning it is essential to understand how current and future forest regeneration depends on ecological processes, fragment size and the connection to the regional seed pool. We have investigated the following questions by applying the forest growth simulation model FORMIND to the situation of the Atlantic Forest in the state of São Paulo, SE Brazil: (1) which set of parameters describing the local regeneration and level of density regulation can reproduce the biomass distribution and stem density of an old growth forest in a reserve? (2) Which additional processes apart from those describing the dynamics of an old growth forest, drive forest succession of small isolated fragments? (3) Which role does external seed input play during succession? Therefore, more than 300 tree species have been classified into nine plant functional types (PFTs), which are characterized by maximum potential height and shade tolerance. We differentiate between two seed dispersal modes: (i) local dispersal, i.e. all seedlings originated from fertile trees within the simulated area and (ii) external seed rain. Local seed dispersal has been parameterized following the pattern oriented approach, using biomass estimates of old growth forest. We have found that moderate density regulation is essential to achieve coexistence for a broad range of regeneration parameters. Considering the expected uncertainty and variability in the regeneration processes it is important that the forest dynamics are robust to variations in the regeneration parameters. Furthermore, edge effects such as increased mortality at the border and external seed rain have been necessary to reproduce the patterns for small isolated fragments. Overall, simulated biomass is much lower in the fragments compared to the continuous forest, whereas shade tolerant species are affected most strongly by fragmentation. Our simulations can supplement empirical studies by extrapolating local knowledge on edge effects of fragments to larger temporal and spatial scales. In particular our results show the importance of external seed rain and therefore highlight the importance of structural connectivity between regenerating fragments and mature forest stands.     

Influence of host migration between woodland and pasture on the population dynamics of the tick Ixodes ricinus: A modelling approach

Ticks act as vectors of pathogens that can be harmful to animals and/or humans. Epidemiological models can be useful tools to investigate the potential effects of control strategies on diseases such as tick-borne diseases. The modelling of tick population dynamics is a prerequisite to simulating tick-borne diseases and the corresponding spread of the pathogen. We have developed a dynamic model to simulate changes in tick density at different stages (egg, larva, nymph and adult) under the influence of temperature. We have focused on the tick Ixodes ricinus, which is widespread in Europe. The main processes governing the biological cycles of ticks were taken into account: egg laying, hatching, development, host (small, mainly rodents, or large, like deer and cattle, mammals) questing, feeding and mortality. This model was first applied to a homogeneous habitat, where simulations showed the ability of the model to reproduce the general patterns of tick population dynamics. We considered thereafter a multi-habitat model, where three different habitats (woodland, ecotone and meadow) were connected through host migration. Based on this second application, it appears that migration from woodland, via the ecotone, is necessary to sustain the presence of ticks in the meadow. Woodland can therefore be considered as a source of ticks for the meadow, which in turn can be regarded as a sink. The influence of woodland on surrounding tick densities increases in line with the area of this habitat before reaching a plateau. A sensitivity analysis to parameter values was carried out and demonstrated that demographic parameters (sex ratio, development, mortality during feeding and questing, host finding) played a crucial role in the determination of questing nymph densities. This type of modelling approach provides insight into the influence of spatial heterogeneity on tick population dynamics.     

Modelling the effect of in-stream and overland dispersal on gene flow in river networks

Modelling gene flow across natural landscapes is a current challenge of population genetics. Models are essential to make clear predictions about conditions that cause genetic differentiation or maintain connectivity between populations. River networks are a special case of landscape matrix. They represent stretches of habitat connected according to a branching pattern where dispersal is usually limited to upstream or downstream movements. Because of their peculiar topology, and the increasing concern about conservation issues in hydrosystems, there has been a recent revival of interest in modelling dispersal in river networks. Network complexity has been shown to influence global population differentiation. However, geometric characteristics are likely to interact with the way individuals move across space. Studies have focused on in-stream movements. None of the work published so far took into consideration the ability of many species to disperse overland between branches of the same network though. We predicted that the relative contribution of these two dispersal modalities (in-stream and overland) would affect the overall genetic structure. We simulated dispersal in synthetic river networks using an individual-based model. We tested the effect of dispersal modalities, i.e. the ratio of overland/in-stream dispersal, and two geometric parameters, bifurcation angle between branches and network complexity. Data revealed that if geometrical parameters affected population differentiation, dispersal parameters had the strongest effect. Interestingly, we observed a quadratic relationship between p the proportion of overland dispersers and population differentiation. We interpret this U-shape pattern as a balance between isolation by distance caused by in-stream movements at low values of p and intense migrant exchanges within the same branching unit at high values of p. Our study is the first attempt to model out-of-network movements. It clearly shows that both geometric and dispersal parameters interact. Both should be taken into consideration in order to refine predictions about dispersal and gene flow in river network.     

Effects of temperature variation on TSD in turtle (C. picta) populations

We formulate a two-sex model of temperature-dependent sex determination (TSD) for a freshwater turtle (C. picta) population. The aim is to understand how environmental temperature variations and nest heat conduction properties affect the long term dynamics of the population. This is a key to understanding how global temperature changes may affect their survival. With stochastic inputs of ambient temperature and solar radiation, the model uses the heat equation to determine the temperature in the egg layer in the nest; in turn, this determines the sex ratio in the egg clutch using a variable degree-day model. Finally, a nonlinear Leslie type, stage-based, two-sex model, is used to determine the long term male and female populations. A two-sex model is required because of different development rates for males and females. The model is flexible enough to enable other researchers to examine the effects of temperature variation variations on other species with TSD, e.g., crocodilians, reptilians, as well as other turtle species. It can be adapted to study effects of nest location, soil type, rain events, different incubation periods, and density effects, for example, the dependence of the mating function on the ratio of males to females and each’s contribution to the sex of hatchlings. Modifications can be easily made to fit a specific life history traits. The model is a beginning step in understanding the long term, high fitness shown by many reptile species with TSD, and it may suggest to experimentalists what data may be relevant to these issues; it can also be useful to wildlife managers in developing strategies for intervention if needed. Among the principal findings are that temperature variability and detailed nest heat conduction properties may buffer projected negative effects on a population.     

Ecological effects of cultivation on the machair sand dune systems of the Outer Hebrides, Scotland

The machair sand dune systems of the Outer Hebrides of Scotland are a unique habitat, which is rare within both a global and European context. Unusually, the machair habitat also represents an agricultural resource that is very important to the Hebridean people, having been subject to both grazing and cultivation throughout the historical period. Following designation as an Environmentally Sensitive Area (ESA) in 1988, the machairs of South Uist have been studied with the aim of understanding the links between agricultural practice and their plant community and ecosystem dynamics. This research focused primarily on the effects of cultivation practices and their role in maintaining plant species richness and community and ecosystem stability. Within two carefully selected areas, the successional plant communities of machair at different stages of recovery following ploughing and cultivation of cereals and potato patches or ‘lazy beds’ were identified at both a macro- and micro-level. Investigations of the vegetation recovery processes on turves taken from newly ploughed land indicated that the initial stages of recolonization are characterized primarily by rapid vegetative reproduction and growth, although re-vegetation by seeds is also an important factor. The implications of these findings for the long-term management of machair plant communities are discussed and in particular the need to maintain old cultivation practices such as shallow ploughing. The need for more detailed research into both seed banks and seed rain and into processes of vegetative reproduction is stressed. Nomenclature: Clapham et al. (1981) and Stace (1991, 1997) for vascular plants; Hubbard (1984) for grasses; Pankhurst & Mullin (1991) for the regional flora; Dobson (1992) for lichens; Watson (1981) for mosses and liverworts.     

Ecological effects of cultivation on the machair sand dune systems of the Outer Hebrides, Scotland

The machair sand dune systems of the Outer Hebrides of Scotland are a unique habitat, which is rare within both a global and European context. Unusually, the machair habitat also represents an agricultural resource that is very important to the Hebridean people, having been subject to both grazing and cultivation throughout the historical period. Following designation as an Environmentally Sensitive Area (ESA) in 1988, the machairs of South Uist have been studied with the aim of understanding the links between agricultural practice and their plant community and ecosystem dynamics. This research focused primarily on the effects of cultivation practices and their role in maintaining plant species richness and community and ecosystem stability. Within two carefully selected areas, the successional plant communities of machair at different stages of recovery following ploughing and cultivation of cereals and potato patches or ‘lazy beds’ were identified at both a macro- and micro-level. Investigations of the vegetation recovery processes on turves taken from newly ploughed land indicated that the initial stages of recolonization are characterized primarily by rapid vegetative reproduction and growth, although re-vegetation by seeds is also an important factor. The implications of these findings for the long-term management of machair plant communities are discussed and in particular the need to maintain old cultivation practices such as shallow ploughing. The need for more detailed research into both seed banks and seed rain and into processes of vegetative reproduction is stressed.     

Measuring and modeling the seasonal changes of an urban Green Treefrog (Hyla cinerea) population

Green Treefrogs (Hyla cinerea) were captured, marked, measured and released at an urban study site in Lafayette, LA, during the 2004 and 2005 breeding seasons. A statistical method based on a generalization of the hypergeometric distribution was used to derive weekly time-series estimates of the population sizes. To describe the population dynamics, a stage structured mathematical model was developed and compared to time-series obtained from the weekly population estimates study using a least-squares approach. Two fitting experiments were done: (1) Using uniform distribution for the birth rate during the breeding season; (2) Using a birth rate distributed according to weekly data on frog calling intensity. Although both model-to-data fits look very promising during the years 2004 and 2005 and result in similar inherent survivorship rates for the tadpoles, juvenile and adult frogs, the fit that uses the calling data predicts a lower number of tadpoles and frogs in the long term than the one that uses uniform birth distribution. The parameter estimates resulting from these fitting experiments are used in the context of stochastic simulations to derive extinction and persistence probabilities for this population. Due to the oscillatory dynamics (with high amplitude) evidenced by the capture-recapture data and corroborated by the model, it is suggested that anuran monitoring efforts should take into account the natural intra-annual variation in population size.     

长期定位施肥对土壤磷、钾素动态变化的影响

23年定位施肥试验的结果表明，不施肥和单施氮肥的土壤，其有效磷质量分数迅速下降，前3年比播前降低约50％，自第7年开始比播前降低2／3左右，降至4-5μg／g之后处于稳定状态。土壤全磷质量分数始终保持在0．40-0．50g／kg的水平，有机磷略有增加。施有机肥以及有机肥与氮肥配施的土壤，其有效磷和有机磷质量分数增加显著。单施氮肥的土壤，其速效钾、缓效钾质量分数均降低，全钾质量分数变化不明显。在每年每公顷单施含钾150．0kg、300．0kg的有机肥或与138kg、276kg氮素配施的土壤中，以单施含钾300．0kg的有机肥的土壤的钾素盈余量最多，并随配施氮量的增加而盈余量减少。试验23年后的土壤，其钾素盈余量与土壤速效钾、缓效钾质量分数均有极显著的相关性，而与全钾质量分数的相关性小大。     

Modeling the Effects of Trophy Selection and Environmental Disturbance on a Simulated Population of African Lions

Abstract:  Tanzania is a premier destination for trophy hunting of African lions (Panthera leo) and is home to the most extensive long-term study of unhunted lions. Thus, it provides a unique opportunity to apply data from a long-term field study to a conservation dilemma: How can a trophy-hunted species whose reproductive success is closely tied to social stability be harvested sustainably? We used an individually based, spatially explicit, stochastic model, parameterized with nearly 40 years of behavioral and demographic data on lions in the Serengeti, to examine the separate effects of trophy selection and environmental disturbance on the viability of a simulated lion population in response to annual harvesting. Female population size was sensitive to the harvesting of young males (≥3 years), whereas hunting represented a relatively trivial threat to population viability when the harvest was restricted to mature males (≥6 years). Overall model performance was robust to environmental disturbance and to errors in age assessment based on nose coloration as an index used to age potential trophies. Introducing an environmental disturbance did not eliminate the capacity to maintain a viable breeding population when harvesting only older males, and initially depleted populations recovered within 15–25 years after the disturbance to levels comparable to hunted populations that did not experience a catastrophic event. These results are consistent with empirical observations of lion resilience to environmental stochasticity .     

Modelling the effects of extreme events on the dynamics of the amphipod Corophium orientale

The brackish water amphipod Corophium orientale is the dominant macroinvertebrate species in the upper Mira estuary, a small mesotidal system located in the southwest coast of Portugal. As climate changes will increase the frequency and intensity of extreme events such as floods and droughts, these will have a negative effect on benthic estuarine invertebrates, namely C. orientale. In order to understand the effects of these events on C. orientale, a dynamic model, based on published information and calibrated with field data, was developed and different scenarios were tested.For model construction, the annual development of three cohorts of C. orientale, their growth rates, and the establishment of the timing of each cohort rise and extinction are introduced. This structure can be repeated indefinitely, for years, and few parameters are required. The model simulations highlight the need for refuge areas that enable a fast recovery of the amphipod population after an extreme event and the recolozination of the affected areas.     

Disentangling the effects of heterogeneity, stochastic dynamics and sampling in a community of aquatic insects

A dynamic and heterogeneous species abundance model generating the lognormal species abundance distribution is fitted to time series of species data from an assemblage of stoneflies and mayflies (Plecoptera and Ephemeroptera) of an aquatic insect community collected over a period of 15 years. In each year except one, we analyze 5 parallel samples taken at the same time of the season giving information about the over-dispersion in the sampling relative to the Poisson distribution. Results are derived from a correlation analysis, where the correlation in the bivariate normal distribution of log abundance is used as measurement of similarity between communities. The analysis enables decomposition of the variance of the lognormal species abundance distribution into three components due to heterogeneity among species, stochastic dynamics driven by environmental noise, and over-dispersion in sampling, accounting for 62.9, 30.6 and 6.5% of the total variance, respectively. Corrected for sampling the heterogeneity and stochastic components accordingly account for 67.3 and 32.7% of the among species variance in log abundance. By using this method, it is possible to disentangle the effect of heterogeneity and stochastic dynamics by quantifying these components and correctly remove sampling effects on the observed species abundance distribution.     

Agent-based simulation of effects of stress on forest tent caterpillar (Malacosoma disstria Hübner) population dynamics

The forest tent caterpillar (Malacosoma disstria Hübner) (FTC) has an outbreak cycle of approximately 10 years; however, smaller spatial scale analyses show some regions have longer or more frequent periods of high defoliation. This may be a result of local forest fragmentation, pollution or other sources of stress that may affect FTC directly or indirectly through stress on their hosts or parasitoids. Population dynamics of FTC were examined to investigate how stress may alter the severity and frequency of defoliation. We developed a spatially explicit agent-based model to simulate the host-parasitoid dynamics of FTC. Theoretical and empirically derived parameters were established using past literature and over 50 years of population data of FTC from Ontario, Canada. We find that increasing FTC fecundity, FTC dispersal or parasitoid mortality resulted in more severe outbreaks while a decrease in parasitoid fecundity or searching efficiency resulted in an overall elevation of defoliation. Parasitoid efficiency was the most effective parameter for altering the FTC defoliation. Since plant stress has been shown to alter several of these parameters in nature due to changes in food quality, habitat suitability, and chemical cue interference, our results suggest that forests affected by stressors such as climate change and pollution will have more severe and frequent defoliation from these insects than surrounding unaffected forests. As stressors such as drought and pollution emissions are predicted to increase in frequency or intensity over the next few decades, understanding how they may affect the outbreak cycle of a forest defoliator can aid in planning strategies to reduce the detrimental effects of this insect.