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1.
利用荧光定量PCR技术对目标基因进行转录水平分析,选择合适的内参基因作为对照是其前提条件.随着氨氮胁迫菲律宾蛤仔毒性效应的深入研究,需要准确评价氨氮对蛤仔肝胰腺组织基因表达的影响.然而,不同浓度氨氮条件下的菲律宾蛤仔肝胰腺组织的内参基因的筛选尚未报道.本研究以2种不同氨氮浓度暴露菲律宾蛤仔14 d的肝胰腺组织cDNA为...  相似文献   

2.
为了准确和系统地分析NH_3-N对菲律宾蛤仔(Ruditapes philippinarum)毒性的分子机制,并对相关基因的转录组学数据进行验证,利用ge Norm和Normfinder这2种软件,以暴露30 d中不同时间点的鳃组织c DNA为模板,从18S r RNA(18S)、beta-actin(Actin)、beta-tubulin(Tubu)、elongation factor 1-alpha(EF1α)、cyclophilin A(Cy PA)、Ubiquitin(Ub)等6个备选管家基因中,筛选可以稳定表达的内参基因,作为转录组学分析的内参基因。以稀释50倍的鳃组织c DNA模板作为检测模板,ge Norm软件分析获得6对备选内参基因的表达稳定性依次为:EF1αCy PAActinTubuUb18S,较优内参为EF1α和Cy PA;Norm Finder软件分析获得6对备选内参基因的表达稳定性为:EF1αActinTubuCy PAUb18S,最优内参基因为EF1α。为了验证上述筛选结果,分别以EF1α和Cy PA作为内参基因研究unigene1的表达趋势,发现以EF1α为内参基因时,unigene1的q RT-PCR的表达趋势与其转录组表达倍数的变化趋势一致。因此确定NH_3-N暴露菲律宾蛤仔后,鳃组织中表达最为稳定的内参基因为EF1α。  相似文献   

3.
大量研究表明P-糖蛋白(P-glycoprotein,P-gp)介导的多型异源物质抗性机制(multi-xentiobiotic resistance,MXR)在贝类耐受或抵抗污染水域中有毒有害物质的毒害中具有重要作用,但是该机制在贝类抵抗或耐受食源性毒素方面作用的研究却很少。本研究以栉孔扇贝(Chlamys farreri)为实验动物,向其投喂产虾夷扇贝毒素(yessotoxins,YTXs)的网状原角藻(Protoceratium reticulatum),通过检测栉孔扇贝鳃和消化腺组织中YTX毒素含量随时间的变化情况,结合2种组织中P-gp介导的MXR活性变化及P-gp在组织中的表达和分布,探讨P-gp在扇贝耐受YTX毒素中可能的作用。研究结果表明,随着毒藻暴露时间的延长,栉孔扇贝鳃和消化腺中YTX含量逐渐增加,且具有明显的时间依赖关系。YTX的大量累积虽未导致扇贝死亡,但是仍然对扇贝组织产生不同程度的毒性。苏木精-伊红(hematoxylin-eosin,HE)染色发现,染毒12 h后,栉孔扇贝鳃组织前端出现明显黑化,消化腺组织导管上皮细胞部分脱落入管腔中,腺管内细胞界限模糊,部分腺管崩解。罗丹明B(rhodamine B,Rho B)外排实验表明YTX毒素暴露能显著增强栉孔扇贝鳃和消化腺组织中P-gp的转运活性,暴露12 h后鳃和消化腺Rho B的排出速率就已分别达到对照组的3.8倍和1.4倍,随着暴露时间的延长,P-gp活性略有增强,72 h后开始下降;P-gp的功能性抑制剂维拉帕米(verapamil,VRP)在实验设定的浓度下没有抑制反而增强了Rho B的外排;免疫定位显示,毒素暴露后栉孔扇贝鳃丝前端纤毛柱状细胞及消化腺导管上皮柱状细胞和腺管消化细胞P-gp免疫阳性信号增强,说明YTX毒素暴露提高了P-gp的表达量。综上推断,YTX毒素可能是P-gp的底物,它能够诱导P-gp转运活性增强,并增加P-gp的表达量来参与扇贝对YTX毒素的耐受或抗性;设定浓度的VRP不能抑制P-gp的活性,这可能是由于种属差异造成的,关于VRP对栉孔扇贝Pgp的作用还有待进一步的研究。  相似文献   

4.
为了更好地从基因角度研究亚硝态氮对贝类的生态毒性,需要筛选一个合适的内参基因作为参考,对其毒性相关基因进行定量表达分析。本研究以菲律宾蛤仔(Ruditapes philippinarum)作为研究对象,以亚硝态氮胁迫的鳃组织cDNA作为模板,利用geNorm软件和NormFinder软件对6个候选内参基因进行表达稳定性分析,并对2个结果做了综合赋权分析。结果显示,geNorm分析的基因表达稳定性结果为ActinCyPAEF1αUbi18STubu,NormFinder软件分析的结果为ActinUbiCyPAEF1α18STubu,最后经加权赋值法综合分析获得6个候选基因的表达稳定性为ActinCyPAUbiEF1α18STubu,即Actin为表达最稳定的基因。因此,Actin可以作为衡量亚硝态氮胁迫后菲律宾蛤仔鳃组织中基因表达的内参基因。  相似文献   

5.
为了筛选出在双酚A诱导下双齿围沙蚕(Perinereis aibuhitensis)体壁组织中最适内参基因,以不同浓度双酚A诱导下双齿围沙蚕互补脱氧核糖核酸(cDNA)为模板进行实时荧光定量PCR,利用Ge Norm、Norm Finder和Bestkeeper三个软件对肌动蛋白(beta-actin, Actin)、核糖体蛋白5(ribosomal protein L5, RPL5)、甘油醛-3-磷酸脱氢酶(glyceraldehyde-3-phosphate dehydrogenase, GAPDH)、微管蛋白(β-tubulin, Tub)、琥珀酸脱氢酶(succinate dehydrogenase complex flavoprotein subunit A, SDHA)和组蛋白(Histone Cluster 1 H_2A Family Member A, HH_2A)这6个备选内参基因的表达量进行分析,筛选出稳定表达的内参基因。结果表明6个内参基因的基因表达量由大到小为ActinGAPDHSDHAHH_2ATubRPL5,Bestkeeper软件分析得到6种内参基因稳定性排名为ActinRPL5SDHATubHH_2AGAPDH,Ge Norm软件分析得出6种内参基因的稳定性排名为SDHARPL5ActinTubHH_2AGAPDH,Normfinder分析的结果为ActinSDHARPL5TubHH_2AGAPDH。综合以上结果确定双酚A诱导下双齿围沙蚕最优内参基因为Actin,不推荐GAPDH作为内参基因使用。推荐同时选取多对内参基因进行实验,可以进一步减少误差。  相似文献   

6.
不同光质对刺葡萄红色愈伤组织(DLR)花青素的积累以及细胞生长具有重要影响.利用RT-qPCR进行不同光质培养的刺葡萄红色愈伤组织功能基因的表达分析,筛选适用于不同光质下RT-qPCR分析的内参基因.以9种光质(黑暗、白光、红光、黄光、蓝光、绿光、紫光、暖白光、暖黄光)下培养获得的刺葡萄红色愈伤组织为材料,对10个葡萄中常用的内参基因进行RT-qPCR分析.结果显示,geNorm、Normfinder、BestKeeper等3个内参分析软件因算法不同,内参稳定性排名具有一定差异. ge Norm评估排名前5的内参基因为α-Tubulin=AP-2 60SRP EF1-α UBQ;Normfinder计算排名前5的内参为60SRP AP-2α-Tubulin EF1-α GAPDH;BestKeeper分析的前5个基因依次为UBQα-Tubulin 60SRP EF1-α SAND.α-Tubulin、60SRP在3个软件评估中排名最为稳定靠前,NAD5则为最不稳定候选内参基因.拟定α-Tubulin、60SRP为最适内参,对目的基因UFGT进行验证,验证结果显示α-Tubulin、60SRP表达趋势相似,具有较高的稳定性,其组合可获得较为精准的表达分析结果.本研究结果可为后续光质处理刺葡萄红色愈伤组织的基因表达研究提供理论基础.(图5表2参39)  相似文献   

7.
环境雌激素对两栖动物的生殖内分泌干扰作用已引起关注,目前的研究主要集中在长期暴露对性腺分化和发育的影响。以雌二醇(E2,10 nmol·L-1)为模式化合物,以非洲爪蟾为实验动物,6月龄的幼蛙暴露6 d,研究雌激素对性腺和输卵管形态以及性二态性基因表达的影响。结果发现,6 d的E2暴露对精巢和卵巢的形态没有明显影响,但从组织学结构来看对卵和精子的发育有微弱的促进作用。E2能够明显地促进了雌性输卵管的发育,表现为输卵管变粗变弯曲。E2暴露显著抑制精巢和卵巢中性激素合成相关基因cyp11a1、3βHSD、Srd5α、ARO的表达,对cyp17的表达无影响,使脑中LHβ和FSHβ的表达下调;对性别分化和性腺发育相关基因Dax、AR、ERα、TFⅢA、TBPL2的表达均无影响,但能够促进卵巢中Sox3的表达;同时促进脑中Emi2的表达,抑制脑中Dmrt1的表达。因此,输卵管可作为敏感的形态指标,性腺中Srd5α、cyp11a1、3βHSD、ARO、Sox3和脑中LHβ、FSHβ、Dmrt1、Emi2可作为分子指标。以上结果可为后续建立评价化学品对两栖动物雌激素效应的短期试验方法提供参考。  相似文献   

8.
为揭示浑河流域水环境内分泌干扰物对水生态的潜在风险,利用兼并引物扩增获得鲫鱼卵黄蛋白原(Vtg)和核糖体蛋白L-7(RPL-7)基因部分碱基序列(分别为825和450bp),建立以RPL-7为内参基因、定量鲫鱼Vtg基因表达的实时定量逆转录聚合酶链反应(qRT-PCR)方法,并将该方法用于定量浑河野生鲫鱼肝组织Vtg基因表达分析。结果显示:与上游对照点(S1)相比,7月下游各点(S4~S8)雄鱼、S4和S6点雌鱼肝组织的VtgmRNA表达水平皆显著升高(P<0.05);11月在雄鱼中未检出VtgmRNA的有效表达,雌鱼也仅在S2和S3点的表达水平升高(P<0.05)。研究表明,浑河流域野生鲫鱼尤其是在7月明显受到了环境雌激素类物质的影响。另外,qRT-PCR方法能够灵敏检测出鲫鱼Vtg基因表达的时空差异。  相似文献   

9.
双酚A对斑马鱼精巢性激素生成酶基因表达的影响   总被引:1,自引:0,他引:1  
为了解环境雌激素对鱼类精巢发育的影响,将成年雄性斑马鱼(Danio rerio)暴露于不同浓度双酚A(0、500、1 000、2 000、4 000μg·L-1)下21 d,并在此基础上,进一步研究了暴露在相同浓度(BPA2 000μg·L-1)不同暴露时间下各基因表达的动力学模式。用荧光定量PCR(qRT-PCR)方法检测试验鱼精巢性激素合成相关细胞色素P450酶类基因(CYP17、CYP11B和CYP19A)以及雌、雄激素受体和促卵泡激素受体(ERα、ERβ、AR和FSHR)基因的表达,用常规组织学方法研究试验鱼精巢结构的变化。结果表明,BPA促进了精巢内源雌激素合成相关酶类基因CYP19A和雌激素受体ERαmRNA、ERβmRNA的表达,且BPA浓度为2 000μg·L-1时3者的表达量显著上调,同时随着暴露时间的延长,具有明显的时间累积效应。1 000μg·L-1BPA可导致斑马鱼精巢CYP17 mRNA的表达量显著下调,BPA2 000μg·L-1暴露12 d引起了CYP11B mRNA表达下调,而随着暴露时间的延长有所回升,但它对精巢AR mRNA的表达却无明显影响。同时,BPA 500μg·L-1引起了FSHR基因的显著上调,在时间动态学上,呈上升趋势。在组织学上,2 000μg·L-1BPA引起斑马鱼精巢生精小管内精子浓缩严重,精原细胞(Sg)和精母细胞(PS和SS)数目都有所减少,BPA 4 000μg·L-1组斑马鱼精巢退化。因此,BPA可诱导精巢内源雌激素合成和雌激素受体的表达,提高雌激素效应,通过抑制CYP17基因的表达,一定程度上抑制雄激素的合成,从而引起斑马鱼精巢组织的破坏。同时,据实验数据推测,雄激素的下调可能启动了下丘脑-垂体-性腺(HPG)轴的负反馈调节机制,而此作用机制还有待进一步研究。  相似文献   

10.
Cu在扇贝组织中的蓄积及其对酶活性的影响   总被引:9,自引:1,他引:9  
采用暴露实验方法,研究了不同浓度的Cu(Cu^2+)对栉孔扇贝(Chlamys farreri)鳃、肌肉、内脏团组织中Cu蓄积量及过氧化氢酶(CAT)活性的影响.结果表明:随水体中Cu浓度的升高,扇贝各组织中Cu蓄积量明显上升,Cu蓄积量顺序为:内脏〉鳃〉肌肉.Cu浓度对栉孔扇贝各组织中过氧化氢酶(CAT)活性均有明显影响,各组织中酶活性均随Cu浓度升高表现为抑制-诱导-抑制的规律.这表明,栉孔扇贝各组织中CAT酶对水体中Cu污染反映敏感,存在计量-效应关系,对海洋Cu早期污染具有指示作用.图2表1参19  相似文献   

11.
A bioblitz inexpensively and quickly generates biodiversity data, but bioblitzes are often conducted with haphazard, unreplicated sampling. Results tend to be taxonomically, geographically, or temporally biased, lack metadata, and consist of lists of observed taxa that do not enable further analyses or correction for imperfect detection. A rapid, recurring, structured survey (RRSS) uses a structured sampling design and temporal and spatial replication to survey randomly selected sites on a conservation property. We participated in a loosely structured bioblitz and a subsequent RRSS at Big Canoe Creek Nature Preserve in Springville (St. Clair County), Alabama (USA) to compare observed richness derived from the 2 survey approaches. The RRSS data structure enabled us to fit models that accounted for imperfect detection to estimate abundances, occupancy probabilities, and habitat associations. The loosely structured bioblitz data could not be used in such models. We present a new integrated multispecies abundance model that we applied to avian RRSS data. Our model extension enables estimation for the community, employs data augmentation to estimate the number of undetected species, and incorporates covariates. The RRSS generated a more comprehensive and less biased list of observed taxonomic richness than the loosely structured bioblitz (e.g., 73 vs. 45 bird species and 104 vs. 63 insect families from the RRSS vs. loosely structured bioblitz, respectively). Models fit to the RRSS data identified seasonal patterns in avian community composition and allowed for estimation of habitat–occupancy relationships for insect taxa. The RRSS protocol has potential for broad transferability as a standardized, quick, and inexpensive way to inventory biodiversity and estimate ecological parameters while providing an outreach opportunity.  相似文献   

12.
Land-use change via human development is a major driver of biodiversity loss. To reduce these impacts, billions of dollars are spent on biodiversity offsets. However, studies evaluating offset project effectiveness that examine components such as the overall compliance and function of projects remain rare. We reviewed 577 offsetting projects in freshwater ecosystems that included the metrics project size, type of aquatic system (e.g., wetland and creek), offsetting measure (e.g., enhancement, restoration, and creation), and an assessment of the projects’ compliance and functional success. Project information was obtained from scientific and government databases and gray literature. Despite considerable investment in offsetting projects, crucial problems persisted. Although compliance and function were related to each other, a high level of compliance did not guarantee a high degree of function. However, large projects relative to area had better function than small projects. Function improved when projects targeted productivity or specific ecosystem features and when multiple complementary management targets were in place. Restorative measures were more likely to achieve targets than creating entirely new ecosystems. Altogether the relationships we found highlight specific ecological processes that may help improve offsetting outcomes.  相似文献   

13.
An argument is presented in which areas of natural arsenic contamination of modern groundwaters throughout Asia have a common origin. Arsenic originally accumulated in oceanic ferro-manganoan sediments of the eastern Palaeo-Tethys. This was further concentrated through oceanic crustal extinction in what later became the south-east Chinese accreted mineralised terrain. Proto-Himalayan uplift of this area created the palaeo-drainage systems of the Ganges – Brahmaputra, Irrawaddy, Mekong, and Red Rivers, with consequent headwater erosion of arsenic-rich sediments. Their downstream deposition as immature and easily redistributed Neogene sandstones, silts, and iron-rich clays has created secondary and tertiary reservoirs of adsorbed and authigenic arsenic, from which the current arsenic-rich groundwaters have evolved. Considering river basins within the above palaeo-hydrogeological framework provides a basis for assessing the risk of arsenic in groundwater basins of south and south-eastern Asia.  相似文献   

14.
How should managers choose among conservation options when resources are scarce and there is uncertainty regarding the effectiveness of actions? Well‐developed tools exist for prioritizing areas for one‐time and binary actions (e.g., protect vs. not protect), but methods for prioritizing incremental or ongoing actions (such as habitat creation and maintenance) remain uncommon. We devised an approach that combines metapopulation viability and cost‐effectiveness analyses to select among alternative conservation actions while accounting for uncertainty. In our study, cost‐effectiveness is the ratio between the benefit of an action and its economic cost, where benefit is the change in metapopulation viability. We applied the approach to the case of the endangered growling grass frog (Litoria raniformis), which is threatened by urban development. We extended a Bayesian model to predict metapopulation viability under 9 urbanization and management scenarios and incorporated the full probability distribution of possible outcomes for each scenario into the cost‐effectiveness analysis. This allowed us to discern between cost‐effective alternatives that were robust to uncertainty and those with a relatively high risk of failure. We found a relatively high risk of extinction following urbanization if the only action was reservation of core habitat; habitat creation actions performed better than enhancement actions; and cost‐effectiveness ranking changed depending on the consideration of uncertainty. Our results suggest that creation and maintenance of wetlands dedicated to L. raniformis is the only cost‐effective action likely to result in a sufficiently low risk of extinction. To our knowledge we are the first study to use Bayesian metapopulation viability analysis to explicitly incorporate parametric and demographic uncertainty into a cost‐effective evaluation of conservation actions. The approach offers guidance to decision makers aiming to achieve cost‐effective conservation under uncertainty.  相似文献   

15.
Large, intact areas of tropical peatland are highly threatened at a global scale by the expansion of commercial agriculture and other forms of economic development. Conserving peatlands on a landscape scale, with their hydrology intact, is of international conservation importance to preserve their distinctive biodiversity and ecosystem services and maintain their resilience to future environmental change. We explored threats to and opportunities for conserving remaining intact tropical peatlands; thus, we excluded peatlands of Indonesia and Malaysia, where extensive deforestation, drainage, and conversion to plantations means conservation in this region can protect only small fragments of the original ecosystem. We focused on a case study, the Pastaza‐Marañón Foreland Basin (PMFB) in Peru, which is among the largest known intact tropical peatland landscapes in the world and is representative of peatland vulnerability. Maintenance of the hydrological conditions critical for carbon storage and ecosystem function of peatlands is, in the PMFB, primarily threatened by expansion of commercial agriculture linked to new transport infrastructure that is facilitating access to remote areas. There remain opportunities in the PMFB and elsewhere to develop alternative, more sustainable land‐use practices. Although some of the peatlands in the PMFB fall within existing legally protected areas, this protection does not include the most carbon‐dense (domed pole forest) areas. New carbon‐based conservation instruments (e.g., REDD+, Green Climate Fund), developing markets for sustainable peatland products, transferring land title to local communities, and expanding protected areas offer pathways to increased protection for intact tropical peatlands in Amazonia and elsewhere, such as those in New Guinea and Central Africa which remain, for the moment, broadly beyond the frontier of commercial development.  相似文献   

16.
17.
Biogeographic theory predicts that rare species occur more often in larger, less‐isolated habitat patches and suggests that patch size and connectivity are positive predictors of patch quality for conservation. However, in areas substantially modified by humans, rare species may be relegated to the most isolated patches. We used data from plant surveys of 81 meadow patches in the Georgia Basin of Canada and the United States to show that presence of threatened and endangered plants was positively predicted for patches that were isolated on small islands surrounded by ocean and for patches that were isolated by surrounding forest. Neither patch size nor connectivity were positive predictors of rare species occurrence. Thus, in our study area, human influence, presumably due to disturbance or introduction of competitive non‐native species, appears to have overwhelmed classical predictors of rare species distribution, such that greater patch isolation appeared to favor presence of rare species. We suggest conservation planners consider the potential advantages of protecting geographically isolated patches in human‐modified landscapes because such patches may represent the only habitats in which rare species are likely to persist. Influencia Humana y Predictores Biogeográficos Clásicos de la Ocurrencia de Especies Raras  相似文献   

18.
Parasitic wasps orient to green leaf volatiles   总被引:12,自引:0,他引:12  
Summary Undamaged plants emit low levels of green leaf volatiles (GLVs), while caterpillar-damaged and artificially damaged plants emit relatively higher levels of certain GLVs. Female braconid parasitoids,Microplitis croceipes, oriented to both damaged plants and to individual GLVs in no-choice tests in a wind tunnel, but seldom oriented to undamaged plants. Female ichneumonid parasitoids,Netelia heroica, also oriented to individual GLVs in a wind tunnel. Males of both wasp species failed to orient to the GLVs. These data show that leaf-feeding caterpillars can cause the release of GLVs, and that parasitic wasps can respond to these odors by flying upwind (chemoanemotactic response), which brings the wasps to their caterpillar hosts. This supports the hypothesis that plants communicate with members of the third trophic level,i.e., plants under herbivore attack emit chemical signals that guide natural enemies of herbivores to sites of plant damage. In this interaction, the GLVs serve as tritrophic plant-to-parasitoid synomones. That parasitoids from two different wasp families oriented to GLVs suggests that the response may be widespread among the Hymenoptera.Mention of a commercial or proprietary product does not constitute an endorsement by the U.S. Department of Agriculture  相似文献   

19.
The macro-algae communities observed in the south lake of Tunis are characterized by the predominance of nitrophilous algae which are in the order of biomass importance:Ulva, Cladophora andEnteromorpha. We have noted seasonal changes of alga distribution. The wind appears to be one of the most important factors influencing this distribution. The total biomass reaches a maximum in the spring. Rapid decomposition of the biomass leads to a severe ecological imbalance, resulting in crises of anoxia and fish death. A restoration project has already started. It aims at removal of contaminated muds and the introduction of a new circulation system. The main objectives of this work were to collect information on the distribution and biomass of the phytobenthic communities as a first step in the constitution of a database for further comparison.  相似文献   

20.
International Union for Conservation of Nature (IUCN) Red List assessments rely on published data and expert inputs, and biases can be introduced where underlying definitions and concepts are ambiguous. Consideration of climate change threat is no exception, and recently numerous approaches to assessing the threat of climate change to species have been developed. We explored IUCN Red List assessments of amphibians and birds to determine whether species listed as threatened by climate change display distinct patterns in terms of habitat occupied and additional nonclimatic threats faced. We compared IUCN Red List data with a published data set of species’ biological and ecological traits believed to infer high vulnerability to climate change and determined whether distributions of climate change‐threatened species on the IUCN Red List concur with those of climate change‐threatened species identified with the trait‐based approach and whether species possessing these traits are more likely to have climate change listed as a threat on the IUCN Red List. Species in some ecosystems (e.g., grassland, shrubland) and subject to particular threats (e.g., invasive species) were more likely to have climate change as a listed threat. Geographical patterns of climate change‐threatened amphibians and birds on the IUCN Red List were incongruent with patterns of global species richness and patterns identified using trait‐based approaches. Certain traits were linked to increases or decreases in the likelihood of a species being threatened by climate change. Broad temperature tolerance of a species was consistently related to an increased likelihood of climate change threat, indicating counterintuitive relationships in IUCN assessments. To improve the robustness of species assessments of the vulnerability or extinction risk associated with climate change, we suggest IUCN adopt a more cohesive approach whereby specific traits highlighted by our results are considered in Red List assessments. To achieve this and to strengthen the climate change‐vulnerability assessments approach, it is necessary to identify and implement logical avenues for further research into traits that make species vulnerable to climate change (including population‐level threats).  相似文献   

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