九龙江下游水源水中新发病原微生物和抗生素抗性基因的定量PCR检测

新发水传病原微生物和抗生素抗性基因对于饮用水的生物安全性有重要意义.以7种典型的水传病原微生物和4种抗生素抗性基因作为检测指标,对闽西南地区的重要水源九龙江下游水源水进行了检测.从九龙江下游4个采样点和附近某水厂进出水采集水样,用0.22μm的滤膜过滤后,进行DNA提取及荧光定量PCR检测.结果表明,九龙江下游水源水中Salmonella enterica(Salmonella spp.)、Legionella pneumophila(L.pneumophila)和Pseudomonas aeruginosa(P.aeruginosa)等个别指标可达到103、104、105copies.mL-1的水平.有机物浓度可能对病原微生物和抗生素抗性基因的水平有较大影响.水厂常规工艺对于大多数病原微生物和抗生素抗性基因可以实现有效去除,但对Salmonella spp.的去除效果不理想.因此为保证饮用水安全,需要在清理污染源、提高处理工艺水平以及末端控制方面加强管理.     

洁净环境样本低浓度微生物高效富集检测及应用

为了研究对洁净环境样本的低浓度微生物监测方法,制备了低浓度的革兰氏阳性菌和阴性菌各3种,使用修饰后的新型磁珠对模拟样本中的微生物进行富集评价实验.革兰氏染色和菌落计数结果表明,磁珠对3种革兰氏阳性菌和3种阴性菌均具有显著富集浓缩作用,与大肠杆菌相比,磁珠对金黄色葡萄菌的富集浓缩比更高.使用磁珠富集液对自来水、桶装水和瓶装矿泉水中的微生物进行非特异性吸附后,比较上清和磁珠-微生物复合物的细菌16S rDNA基因拷贝数和菌落总数指标,结果表明磁珠对自来水和桶装水中的微生物均具有显著的吸附效果（P<0.01,P<0.001）.通过比较,抽滤法和磁珠法对自来水中的微生物富集效果有差异（P=0.002）,2种方法对桶装水和矿泉水的富集效果无显著差异（P=0.362）.采集实际空气样本进行磁珠富集微生物的菌落计数及细菌16S rDNA基因拷贝数进行分析,磁珠-微生物复合物中的绝对基因拷贝数和菌落总数均显著高于磁分离后上清液中基因拷贝数和菌落计数（P=0.0001）.此方法对微生物具有一定的高效富集作用.     

洁净环境样本低浓度微生物高效富集检测及应用

为了研究对洁净环境样本的低浓度微生物监测方法,制备了低浓度的革兰氏阳性菌和阴性菌各3种,使用修饰后的新型磁珠对模拟样本中的微生物进行富集评价实验.革兰氏染色和菌落计数结果表明,磁珠对3种革兰氏阳性菌和3种阴性菌均具有显著富集浓缩作用,与大肠杆菌相比,磁珠对金黄色葡萄菌的富集浓缩比更高.使用磁珠富集液对自来水、桶装水和瓶装矿泉水中的微生物进行非特异性吸附后,比较上清和磁珠-微生物复合物的细菌16S rDNA基因拷贝数和菌落总数指标,结果表明磁珠对自来水和桶装水中的微生物均具有显著的吸附效果（P<0.01,P<0.001）.通过比较,抽滤法和磁珠法对自来水中的微生物富集效果有差异（P=0.002）,2种方法对桶装水和矿泉水的富集效果无显著差异（P=0.362）.采集实际空气样本进行磁珠富集微生物的菌落计数及细菌16S rDNA基因拷贝数进行分析,磁珠-微生物复合物中的绝对基因拷贝数和菌落总数均显著高于磁分离后上清液中基因拷贝数和菌落计数（P=0.0001）.此方法对微生物具有一定的高效富集作用.     

铁矿区内重金属对土壤氨氧化微生物群落组成的影响

以密云水库上游某铁矿区为研究对象,采用荧光定量PCR和变性梯度凝胶电泳(DGGE)分析了矿区内不同采样点的土壤中氨氧化微生物的数量和群落结构的变化,结果表明,土样中氨氧化细菌(AOB)和氨氧化古菌(AOA)的数量变化范围分别为3.01×107~1.08×109copies/g干土和8.65×107~2.69×109copies/g干土.重金属含量与氨氧化微生物数量的相关性分析以及氨氧化微生物群落结构的冗余分析结果表明,该矿区内重金属污染改变了土壤中的氨氧化微生物的数量和结构.Cu污染对AOA的数量起到了显著抑制作用(r= -0.653*, P<0.05),但是对AOB则没有明显作用;Zn污染对尾矿库区域土壤的AOA/AOB比值影响显著(r= -0.606*, P<0.05);Cd污染改变了AOB的种群分布,降低了AOB的多样性水平.土壤中Cr长期干扰并没有改变氨氧化微生物的数量和结构,但是明显得抑制了氨氧化速率,表明重金属污染在一定程度上也影响了土壤生态系统的氮循环.     

太湖冬季军团菌（Legionella spp．）的分布和多样性

军团菌（Legionellas pp．）广泛存在于各种水体中,对人类的健康造成了一定的安全隐患．为了解太湖在冬季是否存在军团菌,以及它的分布和多样性,本研究于2010年2月,在全太湖32个点位采样,使用巢式PCR对样品中军团菌进行检测,并用变性梯度凝胶电泳（denaturing gradient gel eletrop...     

湖泊中军团菌的巢式PCR-MPN检测法

为了直接检测环境水体中军团菌的存在,文章将巢式PCR与倍比稀释法相结合(巢式PCR-MPN法),采用两对引物扩增环境样品基因组DNA。将检测到含有军团菌的样品DNA模板进行十倍梯度稀释,由最低检测的稀释度,计算出样品中军团菌的细胞数,同时确定方法检测的灵敏度。并用克隆建库、构建系统树的方法来验证该文研究方法的特异性。研究结果表明,巢式PCR第二步后获得的序列均为军团菌序列,该方法军团菌DNA的检出限可以低至2.74 fg/μL。该研究建立的水体军团菌检测方法具有简便快捷、特异性好、灵敏度高的特点。     

Do land utilization patterns a ect methanotrophic communities in a Chinese upland red soil?

Soil samples were collected from three plots under di erent land utilization patterns including degradation, farming, and restoration. The abundances of methanotrophs were quantified using real-time polymerase chain reaction (PCR) based on the pmoA and 16S rRNA genes, and the community fingerprint was analyzed using denaturing gradient gel electrophoresis (DGGE) aiming at pmoA gene. Significantly lower 16S rRNA and pmoA genes copies were found in the degradation treatment than in farming and restoration. Higher abundances of Type I than those of Type II methanotrophs were detected in all treatments. The treatment of farming was clearly separated from degradation and restoration according to the DGGE profile by cluster analysis. The lowest diversity indices were observed in the F (farming plot), suggesting that the community structure was strongly a ected by farming activities. There were significantly positive correlations between the copy numbers of pmoA also Type II-related 16S rRNA genes and soil available K content. Strong negative and positive correlations were found between Type I and soil pH, and available P content, respectively. We concluded that the vegetation cover or not, soil characteristics including pH and nutrients of P and K as a result of anthropogenic disturbance may be key factors a ecting methanotrophic communities in upland soil.     

Do land utilization patterns affect methanotrophic communities in a Chinese upland red soil?

Soil samples were collected from three plots under different land utilization patterns including degradation,farming,and restoration.The abundances of methanotrophs were quantified using real-time polymerase chain reaction(PCR)based on the pmoA and 16S rRNA genes,and the community fingerprint was analyzed using denaturing gradient gel electrophoresis(DGGE)aiming at pmoA gene.Significantly lower 16S rRNA and pmoA genes copies were found in the degradation treatment than in farming and restoration.Higher abundances of Type Ⅰ than those of Type Ⅱ methanotrophs were detected in all treatments.The treatment of farming was clearly separated from degradation and restoration according to the DGGE profile by cluster analysis.The lowest diversity indices were observed in the F(farming plot),suggesting that the community structure was strongly affected by farming activities.There were significantly positive correlations between the copy numbers of pmoA also Type Ⅱ-related 16S rRNA genes and soil available K content.Strong negative and positive correlations were found between Type Ⅰ and soil pH,and available P content,respectively.We concluded that the vegetation cover or not,soil characteristics including pH and nutrients of P and K as a result of anthropogenic disturbance may be key factors affecting methanotrophic communities in upland soil.     

Direct evidence of microbiological water quality changes on bacterial quantity and community caused by plumbing system

Drinking water quality deteriorates from treatment plant to customer taps, especially in the plumbing system. There is no direct evidence about what the differences are contributed by plumbing system. This study compared the water quality in the water main and at customer tap by preparing a sampling tap on the water main. The biomass was quantified by adenosine triphosphate (ATP) and the microbial community was profiled by 454 pyrosequencing. The results showed that in distribution pipes, biofilm contributed >94% of the total biomass, while loose deposits showed little contribution (< 2%) because of the low amount of loose deposits. The distribution of biological stable water had minor effects on the microbiocidal water quality regarding both quantity (ATP 1 ng/L vs. 1.7 ng/L) and community of the bacteria. Whereas the plumbing system has significant contribution to the increase of active biomass (1.7 ng/L vs. 2.9 ng/L) and the changes of bacterial community. The relative abundance of Sphingomonas spp. at tap (22%) was higher than that at water main (2%), while the relative abundance of Pseudomonas spp. in tap water (15%) was lower than that in the water from street water main (29%). Though only one location was prepared and studied, the present study showed that the protocol of making sampling tap on water main offered directly evidences about the impacts of plumbing system on tap water quality, which makes it possible to distinguish and study the processes in distribution system and plumbing system separately.     

O3-BAC-Cl2: A multi-barrier process controlling the regrowth of opportunistic waterborne pathogens in drinking water distribution systems

Simulated drinking water distribution system (DWDS) treated with O₃-BAC-Cl₂ (ozone-biological activated carbon-chlorine) was constructed to study its effects on the regrowth of five typical opportunistic pathogens (OPs). It was found that O₃-BAC-Cl₂ could significantly reduce the regrowth of target OPs in the effluents of DWDS compared with Cl₂ and O₃-Cl₂ with the same residual chlorine levels. However, the effect of O₃-BAC-Cl₂ on the average numbers of target OPs gene markers in the biofilms of DWDS was not apparent, suggesting that OPs in the biofilms of DWDS were tolerant to the upstream disinfection process. The quantification of target OPs in the BAC-filter column demonstrated that OPs decreased with the increase of depth, which was likely due to the organic nutrient gradient and microbial competition inside the BAC-filter. Increase in the ozone dose could further reduce the OPs at the bottom of the BAC-filter. Spearman correlation analysis demonstrated that some significant correlations existed between target microorganisms, suggesting potential microbial ecological relationships. Overall, our results demonstrated that the BAC-filter may act as a “battlefield” suppressing the OPs through microbial competition. O₃-BAC-Cl₂ could be an effective multi-barrier process to suppress the proliferation of OPs in the bulk water of DWDS. However, OPs protected by the biofilms of DWDS should receive further attention because OPs may be detached and released from the biofilms.     

太湖北部湖区春、冬季节天然有机质的荧光特征及环境意义

天然有机质(OM)广泛存在于各类水体,含有丰富的碳、氮、磷等生源要素,其形成、转化、归宿及其相伴随的营养盐再生过程是水生态系统营养盐生物地球化学循环的重要环节,在湖泊蓝藻水华暴发过程中势必也扮演着非常重要的营养盐供给者的角色.本研究于2015年2月和5月分别在太湖北部湖区采集了17个样品,利用POM-DOM PARAFAC三维荧光模型解析春、冬季节颗粒态有机质(POM)和溶解态有机质(DOM)的荧光特征及来源,并探讨POM和DOM各荧光组分之间及其与叶绿素a(Chla)的关系.结果表明,春、冬季节太湖北部湖区POM和DOM的荧光峰、荧光中心位置和荧光强度均存在明显的差别;POM有着比DOM更复杂的组分构成.综合POM和DOM的荧光强度和荧光指数可知,春、冬季节太湖北部湖区POM和DOM均以自生源为主,河口区受陆源贡献较大.POM(C1p~C5p)和DOM(C1d~C5d)有5种荧光组分,分别是类色氨酸(C1和C2)、类腐殖质(C3和C4)及类酪氨酸(C5).POM和DOM的荧光组分特征存在明显的差别;春、冬季节POM均以类腐殖质荧光C3为主,荧光组分高值区分别集中在梅梁湾区域和湖心区;而DOM均以类蛋白组分C2、C1和C5为主,荧光组分高值区均分布在竺山湾区域.相关分析结果显示,春季C1d与C2d(P0.01)、C3d与C4d(P0.01)、C1p与C4p(P0.05)、C2p与C5p(P0.01)均具有较强的相关性.值得注意的是,C3d(P0.01)、C4d(P0.05)与C3p均具有较好的相关关系,表明POM与DOM在组分、来源上具有某种联系.与春季类似,冬季荧光组分C1d与C2d、C3d与C4d、C1p与C2p、C1d与C2p亦具有极好的相关性(P0.01).春季C5d与Chla之间存在正相关关系(P0.01),而C2d(P0.05)、C3p(P0.01)与Chla之间具有负相关关系;冬季C4d与Chla之间也存在负相关关系(P0.05).     

Microbiological quality of roof tank water in an urban village in southeastern China

Urban villages are unique residential neighborhoods in urban areas in China. Roof tanks are their main form of water supply, and water quality deterioration might occur in this system because of poor hygienic conditions and maintenance. In this study, water samples were seasonally collected from an urban village to investigate the influence of roof tanks as an additional water storage device on the variation in the microbial community structure and pathogenic gene markers. Water stagnation in th...     

Rotavirus Surveillance in Tap Water,Recycled Water,and Sewage Sludge in Thailand: A Longitudinal Study, 2007–2018

The objective of this study was to describe the epidemiological and molecular surveillance of rotaviruses in tap water, recycled water, and sewage sludge in Thailand from 2007 to 2018. Three hundred and seventy tap water, 202 recycled water, and 72 sewage sludge samples were collected and processed to detect the rotavirus VP7 gene using RT-nested PCR. Rotavirus G genotypes were identified by DNA sequencing and phylogenetic analysis. The frequency of rotavirus detection was 0.54% of the tap water samples, 30.2% of the recycled water samples, and 50.0% of the sewage sludge samples. During the 12-year surveillance, G1 was prevalent most years and constantly predominant in recycled water and sewage sludge. G2 was identified in a tap water sample and in recycled water samples. G3 and G9 were observed in both recycled water and sewage sludge samples. The uncommon G6 rotavirus strain was identified in one recycled water sample. The rotavirus VP4 gene was detected in rotavirus strains with an identified G genotype using RT-multiplex nested PCR. The unusual P[6] genotype was the most frequently detected, followed by mixed P[6]/[4] and P[4] genotypes. Phylogenetic analysis of both G and P genotypes showed a close genetic relationship with sequences of human rotavirus strains. The high nucleotide identity of the rotavirus strains found in this study to human rotavirus strains suggests that the rotaviruses are derived from human source. These results represent useful epidemiological and molecular information for evaluating rotavirus distribution in water for consumption and irrigation, and in biosolids for agricultural application.

     

以梭鱼金属硫蛋白基因表达监测海洋重金属污染

分离了梭鱼金属硫蛋白132个碱基对应44个氨基酸的部分基因序列,以此为基础建立了分析梭鱼金属硫蛋白基因表达的实时定量PCR方法,并用于分析渤海南戴河和大神堂近岸海域野生梭鱼金属硫蛋白基因的表达.结果表明,南戴河野生梭鱼金属硫蛋白基因的表达水平(雄鱼:0.012 ± 0.0064 copies/copy β-actin;雌鱼:0.0099 ± 0.0042 copies/copy β-actin)明显高于大神堂野生梭鱼的表达水平(雄鱼:0.0017± 0.0011 copies/copy β-actin;雌鱼:0.0014 ± 0.00095 copies/copy β-actin).该结果与两地野生梭鱼体内重金属残留水平相一致,提示梭鱼金属硫蛋白基因可作为监测海洋重金属污染的敏感标志物之一.     

Diversity of methanotrophs in Zoige wetland soils under both anaerobic and aerobic conditions

Zoige wetland is one of the most important methane emission centers in China. The oxidation of methane in the wetland a ects global warming, soil ecology and atmospheric chemistry. Despite their global significance, microorganisms that consume methane in Zoige wetland remain poorly characterized. In this study, we investigated methanotrophs diversity in soil samples from both anaerobic site and aerobic site in Zoige wetland using pmoA gene as a molecular marker. The cloning library was constructed according to the pmoA sequences detected. Four clusters of methanotrophs were detected. The phylogenetic tree showed that all four clusters detected were a liated to type I methanotrophs. Two novel clusters (cluster 1, cluster 2) were found to relate to none of the recognized genera of methanotrophs. These clusters have no cultured representatives and reveal an ecological adaptation of particular uncultured methanotrophs in Zoige wetland. Two clusters were belonging to Methylobacter and Methylococcus separately. Denaturing gradient gel electrophoresis gel bands pattern retrieved from these two samples revealed that the community compositions of anaerobic soil and aerobic soil were di erent from each other while anaerobic soil showed a higher metanotrophs diversity. Real-time PCR assays of the two samples demonstrated that aerobic soil sample in Zoige wetland was 1.5 times as much copy numbers as anaerobic soil. These data illustrated that methanotrophs are a group of microorganisms influence the methane consumption in Zoige wetland.     

焦化废水活性污泥法处理中微型动物群落及其与处理性能之间的关系

为了分析难降解焦化废水活性污泥法处理中的微型动物群落特征,本研究考察了活性污泥法焦化废水处理厂中的微型动物群落,分析了其与处理性能之间的相互关系.结果发现,本研究共采集的64个水样中,鉴别出28个种属微型动物,其中,原生动物27种(22种纤毛虫、4种鞭毛虫、1种有壳变形虫),1个类群微型后生动物.固着型和匍匐型纤毛虫为共优势群,固着型小口钟虫(Vorticella microstoma)为绝对优势种.除小口钟虫(V.microstoma)(出现频率100%)外,出现频率较高的种类还有轮虫(rotifers)(97%)、沟钟虫(Vorticella convallaria)(69%)等.与常规废水活性污泥法处理系统相比,焦化废水处理系统中的微型动物种类和数量相对偏低.相关性分析结果表明,生物学参数与出水水质、运行参数间存在着不同的相关性.其中,累枝虫属(Epistylis spp.)与出水氨氮(r=-0.740,p0.01)、氰化物(r=0.509,p0.05)和DO(r=0.514,p0.05)存在着显著的相关性;吸管虫属(Podophrya spp.)与硝化效率呈显著负相关(p0.05),它们可作为系统处理性能参数的指示微生物;其他种属与出水水质和运行参数间的相关性不显著(p0.05).因子分析揭示了与系统相关联的潜在的重要影响因素,以及某些微型动物种属间存在的相互关系.     

Long-term effects of environmentally relevant concentrations of silver nanoparticles on microbial biomass, enzyme activity, and functional genes involved in the nitrogen cycle of loamy soil

The increasing production and use of engineered silver nanoparticles (AgNP) in industry and private households are leading to increased concentrations of AgNP in the environment. An ecological risk assessment of AgNP is needed, but it requires understanding the long term effects of environmentally relevant concentrations of AgNP on the soil microbiome. Hence, the aim of this study was to reveal the long-term effects of AgNP on soil microorganisms. The study was conducted as a laboratory incubation experiment over a period of one year using a loamy soil and AgNP concentrations ranging from 0.01 to 1?mg?AgNP/kg soil. The short term effects of AgNP were, in general, limited. However, after one year of exposure to 0.01?mg?AgNP/kg, there were significant negative effects on soil microbial biomass (quantified by extractable DNA; p?=?0.000) and bacterial ammonia oxidizers (quantified by amoA gene copy numbers; p?=?0.009). Furthermore, the tested AgNP concentrations significantly decreased the soil microbial biomass, the leucine aminopeptidase activity (quantified by substrate turnover; p?=?0.014), and the abundance of nitrogen fixing microorganisms (quantified by nifH gene copy numbers; p?=?0.001). The results of the positive control with AgNO3 revealed predominantly stronger effects due to Ag⁺ ion release. Thus, the increasing toxicity of AgNP during the test period may reflect the long-term release of Ag⁺ ions. Nevertheless, even very low concentrations of AgNP caused disadvantages for the microbial soil community, especially for nitrogen cycling, and our results confirmed the risks of releasing AgNP into the environment.     

Abundance and diversity of ammonia-oxidizing archaea in response to various habitats in Pearl River Delta of China, a subtropical maritime zone

Ammonia-oxidizing archaea (AOA) are widely considered key to ammonia oxidation in various environments. However, little work has been conducted to simultaneously investigate the abundance and diversity of AOA as well as correlations between archaeal amoA genotypes and environmental parameters of different ecosystems at one district. To understand the abundance, diversity, and distribution of AOA in Pearl River Delta of China in response to various habitats, the archaeal amoA genes in soil, marine, river, lake, hot spring and wastewater treatment plant (WWTP) samples were investigated using real-time fluorescent quantitative PCR and clone libraries. Our analyses indicated that the diversity of AOA in various habitats was different and could be clustered into five major clades, i.e., estuary sediment, marine water/sediment, soil, hot spring and Cluster 1. Phylogenetic analyses revealed that the structure of AOA communities in similar ecological habitats exhibited strong relation. The canonical correspondence method indicated that the AOA community structure was strongly correlated to temperature, pH, total organic carbon, total nitrogen and dissolved oxygen variables. Assessing AOA amoA gene copy numbers, ranging from 6.84×10⁶ to 9.45×10⁷ copies/g in dry soil/sediment, and 6.06×10⁶ to 2.41×10⁷ copies/L in water samples, were higher than ammonia-oxidizing bacteria (AOB) by 1-2 orders of magnitude. However, AOA amoA copy numbers were much lower than AOB in WWTP activated sludge samples. Overall, these studies suggested that AOA may be a major contributor to ammonia oxidation in natural habitats but play a minor role in highly aerated activated sludge. The result also showed the ratio of AOA to AOB amoA gene abundance was positively correlated with temperature and less correlated with other environmental parameters. New data from our study provide increasing evidence for the relative abundance and diversity of ammonia-oxidizing archaea in the global nitrogen cycle.     

紫色土丘陵区畜禽养殖场土壤中抗生素抗性基因分布特征

鉴于紫色土高垦殖丘陵区土壤中抗生素抗性基因的潜在生态环境风险,本研究采用高通量荧光定量PCR技术,分析了抗生素抗性基因在不同类型畜禽养殖场(养猪场、养鸡场和养牛场)土壤中的丰度和多样性.结果表明,3种养殖场土壤中共检出79种抗生素抗性基因和5种可移动基因元件,其中多重耐药类基因是养殖场土壤中丰度最高的耐药基因.不同养殖场土壤中抗生素抗性基因的丰度和多样性均表现为养鸡场和养猪场样品高于养牛场土壤,且3种养殖场土壤样品中的抗性基因表现出不同的类别分布特征.养殖场土壤中较高的可移动基因元件丰度,及其与抗生素抗性基因丰度显著的相关性(P0. 05)说明,可移动基因元件可能促进了抗生素抗性基因在养殖场土壤中的迁移和扩散.