Relationship between phytoplankton cell size and the rate of orthophosphate uptake: in situ observations of an estuarine population

Orthophosphate uptake by a natural estuarine phytoplankton population was estimated using two methods: (1) ³²P uptake experiments in which filters of different pore sizes were used to separate plankton size-fractions; (2) ³³P autoradiography of phytoplankton cells. Results of the first method showed that plankton cells larger than 5 m were responsible for 2% of the total orthophosphate uptake rate. 98% of the total uptake rate occurred in plankton composed mostly of bacteria, which passed the 5 m screen and were retained by the 0.45 m pore-size filter. There was no orthophosphate absorption by particulates in a biologically inhibited control containing iodoacetic acid. Orthophosphate uptake rates of individual phytoplankton species were obtained using ³³P autoradiography. The sum of these individual rates was very close to the estimated rate of uptake by particulates larger than 5 m in the ³²P labelling experiment. Generally, smaller cells were found to have a faster uptake rate per m³ biomass than larger cells. Although the nannoplankton constituted only about 21% of the total algal biomass, the rate of phosphate uptake by the nannoplankton was 75% of the total phytoplankton uptake rate. Results of the plankton autoradiography showed that the phosphate uptake rate per unit biomass is a power function of the surface: volume ratio of a cell; the relationship is expressed by the equation Y=2x10^-11 X ^1.7, where Y is gP m^-3 h^-1 and X is the surface: volume ratio. These results lend support to the hypothesis that smaller cells have a competitive advantage by having faster nutrient uptake rates.     

Zooplankton of tikehau atoll (Tuamotu archipelago) and its relationship to particulate matter

The standing stock and taxonomic composition of zooplankton (>200 m) were monitored in the lagoon of Tikehau atoll from April 1985 to April 1986. These data were supplemented by two 10 d studies on the variability, structure and functioning of the pelagic ecosystem. The biomass of animals >200 m comprised 50% of the total biomass of all organisms from 35 to >2000 m. The zooplankton populations were characterized by successive blooms of copepods, larvaceans, pteropods and salps, probably arising from the periodic input of detritus from the reef during windy periods. As a result, the ecosystem was not in a steady state and the data for the fluxes of organic matter are presented separately for April 1985 and April 1986. Using the C:N:P ratio method, net growth efficiencies, K ₂, were calculated for total mesozooplankton, mixed copepods, and two planktonic species, Undinula vulgaris and Thalia democratica. Combined with nitrogen and phosphorus excretion rates, these K ₂ values enabled the assessment of production rates. On a 24 h basis, P:B ratios (%) were close to 100 for the total zooplankton and 54, 34 and 800 for mixed copepods, U. vulgaris and T. democratica, respectively. These ratios are 5.7 times lower than that recorded for phytoplankton. High productivity may be ascribable to the high density of seston, the high temperature (29.5°C), and the kind of organisms present. Zooplankton production equalled 38 and 30% of ¹⁴C uptake during April 1985 and April 1986, respectively. Ingestion of animals >35m was calculated by means of assimilation efficiencies and amounted to 17 and 7% of particulate organic carbon, 100 and 38% of living carbon, and 64 and 140% of primary production during the two periods, respectively. Finally, inorganic exduring was 32 and 18% of phytoplankton nitrogen and phosphorus requirements. A model based on the dimensional structure of the pelagic food-web, has been drawn to illustrate the biomass and carbon, nitrogen and phosphorus fluxes in the study area. The lagoon appears to export part of its planktonic biomass, which is 4.2 times lower one sea mile outside the main pass connecting the lagoon to the open ocean.     

Zooplankton abundance and grazing at Davies Reef,Great Barrier Reef,Australia

Zooplankton abundance and grazing on autotrophic and heterotrophic particulate matter were measured along a transect across Davis Reef (18°5S; 147°39E) and in the back-reef lagoon over tidal and diel cycles during austral winter (August 1984). Zooplankton entering the reef from the surrounding shelf waters decreased in abundance over the reef flat, presumably because of predation. Within the reef lagoon, maximum daytime densities of pelagic copepods occurred during high water, suggesting an external input. At night, water-column zooplankton biomass increased by a factor of 2 to 3 due to the emergence of demersal reef zooplankton. Zooplankton grazing rates on heterotrophic particulate matter (bacteria + detritus and Protozoa) compared to phytoplankton were higher on the reef flat than on the fore-reef or lagoon. Within the lagoon, zooplankton grazing rates on heterotrophic material were maximum during high water, coincident with maximum tidal concentrations of particulate organic carbon. The combined demersal and pelagic zooplankton community were often able to crop 30% of the daily primary production by >2µm phytoplankton. However, >50% of phytoplankton biomass was in cells <2µm, presumably unavailable to these zooplankton. Our particulate production and ingestion measurements, together with zooplankton carbon demand extrapolated from respiration estimates, suggest that the zooplankton community of Davies Reef derives much of its nutrition from detritus.Joint contribution from the University of Maryland, Center for Environmental and Estuarine Studies (No. 2015), and the Microbial Ecology on a Coral Reef Workshop (MECOR No. 19)     

Thalassia testudinum productivity: A field comparison of measurement methods

A 6-day in situ comparison between the Wetzel inorganic ¹⁴C uptake and Zieman leaf-biomass techniques for measuring net primary production rates in the seagrass Thalassia testudinum was performed in the northeastern Gulf of Mexico. Measurement differences between the two methods were insignificant when the ¹⁴C uptake technique was corrected for sediment ¹⁴C uptake (13%), incubation-chamber light-energy absorption (14%) and differences in total light-energy which resulted from the experimental design (7.7%). These results reinforce previous observations that the ¹⁴C technique estimates net particulate-carbon production.     

Effects of suspended sediments on egg production of the calanoid copepod Acartia tonsa

The estuarine copepod Acartia tonsa was collected on several occasions between 4 April and 14 August 1985 from Terrebonne Bay, Louisiana (29°08N; 90°36W) and the effects in its diet of suspended sediments, collected from the same area, were measured at five different concentrations of sediment (100 to 1 000 ppm) and six phytoplankton concentrations (500 to 13 000 cells ml^-1 Thalassiosira weissflogii). Egg production rate was used as an index of diet quality. At low phytoplankton concentrations (500 cells ml^-1), and at intermediate phytoplankton concentrations (2 000 cells ml^-1) for previously starved copepods, egg production was reduced by up to 40% at a sediment concentration of 250 ppm and further reduced at higher sediment concentrations. At higher food concentrations (4 000 to 13 000 cells ml^-1), suspended sediment had no effect on egg production rates at sediment concentrations up to 500 ppm. Rates were reduced only at the highest sediment concentration of 1 000 ppm. Under most natural conditions, suspended sediment would not significantly affect egg production rates in A. tonsa.     

Nitrogenous nutrition in the euphotic zone of the Central North Pacific Gyre

The uptake rates of the three nitrogen compounds ammonium, nitrate, and urea were measured in the oligotrophic North Central Pacific Gyre in August–September 1985. The measurements were performed by using ¹⁵N-labelled substrates and incubating for short-time periods (3 to 4 h) under simulated in situ conditions. Ambient concentrations of the nitrogenous nutrients were generally below 0.10 mol l^-1. The average total daily nitrogen uptake rate, integrated over the euphotic zone, was 12.5 mmol N m^-2 d^-1. Diel studies in the upper water mass resulted in a calculated phytoplankton growth rate of 1.3 d^-1. Ammonium was the dominating nutrient, accounting for on the average 54% of the total nitrogen uptake, while urea uptake represented 32% and nitrate 14%. Ammonium uptake rates at a coastal station off the Hawaiian Islands were very close to the rates found at the oceanic station. Organisms <3 m dominated the nitrogen assimilation, being responsible for about 75% of the ammonium uptake. The nitrogen uptake rates in this study seem to be higher than those found by earlier investigations in the area, but correlated well with other productivity measurements performed during the same cruise.     

Reductions in photosynthetic carbon uptake in epiphytic diatoms by water-soluble extracts of leaves of Zostera marina

A water-soluble fraction of green leaves of Zostera marina L. decreased carbon uptake rates in diatoms found as epiphytes at Roberts Bank (Lat 49°2N; Long. 123°8W) on the west coast of Canada. Extract concentrations of 11 to 1 g dry leaf ml^-1, added immediately before ¹⁴C-uptake was measured over a 3-h period, reduced uptake to 36 to 80% of controls, respectively. A lower concentration (0.6 g dry leaf ml^-1) reduced uptake significantly in only one of four cultures. Addition of the whole extract 3 d before carbon uptake was measured or in one-third doses, 0, 1, and 2 d before, resulted in inhibition similar to that observed when the whole extract was added immediately before the ¹⁴C.     

Orthophosphate uptake by phytoplankton and bacterioplankton from the Los Angeles Harbor and Southern California coastal waters

Orthophosphate (P) uptake on a seasonal basis in surface waters and in vertical profiles was directly proportional to the standing stocks of phytoplankton and bacterioplankton in the outer Los Angeles Harbor and in southern California coastal waters during 1978–1979. A phytoplankton-enriched size fraction (PEF) which was retained on a 1 m pore-size filter contained 83% of the total chlorophyll a but only 18% of the total bacteria. A bacterioplankton-enriched size fraction (BEF) which passed the 1 m filter but was retained on a 0.2 m filter contained 82% of the total bacteria but only 17% of the total chlorophyll a. PEF and BEF accounted for 91 and 9% of the microbial carbon, respectively. The differential uptake of 10 radiolabeled substrates more fully characterized PEF and BEF. ³³P uptake occurred in both PEF and BEF, accounting for 47 and 53%, respectively, of the total uptake. ³³P uptake by both size fractions was inhibited by low concentrations of 2,4-dinitrophenol (DNP), N-ethylmaleimide (NEM) and carbonyl cyanide, m-chlorophenylhydrozone (CCCP). Darkness and low levels of 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU) selectively inhibited ³³P uptake by PEF; valinomycin selectively inhibited ³³P uptake by BEF. An experiment measuring ³³P uptake velocity versus P concentration produced sigmoidal saturation kinetics at high levels of exogenous P. Kinetic parameter analyses according to the Hill equation gave a V _max of 7.12 nmol l^–1 h^–1 and aK _t of 0.41 nmol l^–1 for PEF, and a V _max of 5.17 nmol l^–1 h^–1 and aK _t of 112 nmol l^–1 for BEF. Consideration of relative surface areas of phytoplankton and bacterioplankton, their ³³P uptake rates in light and dark, and estimates of the population turnover times emphasizes the potential importance of bacterioplankton in community phosphorus metabolism.     

Polychlorinated biphenyl (PCB) uptake by marine phytoplankton

The time-courses of uptake for 2,4,5,2,5-pentachlorobiphenyl (PCB) by 11 marine phytoplankton species were measured and found to be rapid, with equilibration occurring within 0.5 to 2.0 h. These data were described with the empirical Freundlich adsorption isotherm. The relationship between cell density and accumulation of PCBs was also investigated. Concentration factors on a volume per volume basis ranged from 1.23x10⁴ to 2.41x10⁶ for the 11 algal species examined. These values are comparable in magnitude to factors reported previously for phytoplankton in natural marine systems.     

The ammonium/methylammonium uptake system of Symbiodinium microadriaticum

The substrate analogue [¹⁴C]-methylammonium was used to study ammonium/methylammonium uptake by Symbiodinium microadriaticum (zooxanthellae). The value of the Michaelis constant (K _m) for the uptake system was approximately 35 M with methylammonium as substrate; ammonium was a competitive inhibitor of methylammonium uptake, and the K _m for ammonium uptake (determined as the inhibition constant, K _i, for methylammonium) was 6.6 M. Methylammonium uptake by zooxanthellae was light-dependent. Methylammonium uptake rates of zooxanthellae which had been freshly isolated from the hermatypic coral Acropora formosa (0.85±0.05x10^-10 mol min^-1 cell^-1) were lower than those of axenic cultures of the zooxanthellae from Montipora verrucosa (Acroporidae) grown under various nitrogen regimes (1.6 to 12x10^-10 mol min^-1 cell^-1). Maximum uptake rates were found for ammonium-starved cultured M. verrucosa zooxanthellae (10.2 to 12x10^-10 mol min^-1 cell^-1); M. verrucosa zooxanthellae growing with ammonium as nitrogen source and zooxanthellae which had been freshly isolated from A. formosa gave similar and considerably lower uptake rates (0.85 to 1.6x10^-1 mol min^-1 cell^-1). These results suggest that either coral tissue contains sufficient ammonium to repress synthesis of the uptake system of the algal symbionts or, alternatively, there are additional barriers to ammonium transport for zooxanthellae in vivo.     

Determination of ammonium uptake and regeneration rates using the seawater dilution method

We have developed a method for the determination of ammonium uptake and regeneration rates applying the principle of the seawater dilution technique. The method is based on the separation of uptake and regeneration processes in the dilution series. A model is used to estimate ammonium uptake and regeneration rates simultaneously, in addition to phytoplankton growth and grazing rates. The method was applied to dilution experiments conducted during a two-year study of the upwelling region off Oregon, USA. Ammonium uptake and regeneration rates determined with our method ranged from 0.5 to 3 mol l^-1d^-1 and from 0.2 to 2.9 mol l^-1d^-1, respectively. These values agree well with those from other studies applying ¹⁵N tracer techniques in the same or similar environments. We found a close coupling between ammonium uptake and regeneration, and a strong relationship between ammonium regeneration and grazing rates. In addition, the nutritional status of the phytoplankton community could be assessed by comparing instantaneous ammonium uptake rates with the specific phytoplankton growth rates. Using the dilution technique to determine ammonium uptake and regeneration rates of the plankton community is a promising alternative to the application of tracer techniques conventionally used to determine these rates.     

Some experiments on phosphate assimilation by coastal marine plankton

A study of phosphate assimilation by coastal marine plankton revealed that both phytoplankton and microheterotrophs incorporated radioactive phosphorus (³³P). Size fractionation of the particulate matter (using 1 m pore diameter Nucleopore^® membrane filters), antibiotic treatment (using garamycin), and independent estimaties of photoautotrophic (¹⁴CO₂ uptake) and heterotrophic (³H-glucose uptake) activities were employed to separate phyto- and bacterioplankton phosphate uptake. Results indicated that phytoplankton ³³P-uptake was best estimated by the fraction of particulate matter retained on the 1 m membrane filters. Usually, less than 10% of the phytoplankton (based on chlorophyll a measurements) passed the 1 m pore-diameter filters, whereas about 90% of the heterotrophic activity passed. At least 50% of the ³³P-uptake was associated with the <1 m fraction. It may be possible to resolve the phytoplankton and bacterial contributions to ³³P-uptake by comparing the percent of total ³³P-uptake with the percent of total ³H-glucose uptake associated with the >1 m fraction.     

Isotopic composition (C & N) of the suspended particles and N uptake by phytoplankton in a shallow tropical coastal lagoon

The spatial distribution of the C/N ratios and variations in δ¹³C and δ¹⁵N of suspended particulate matter were used to characterise their source in Asia’s largest brackish water lagoon, Chilika, India. In addition, the significance of re-mineralised nutrients in the primary productivity of the shallow lagoon was also determined through quantification of the subsurface nitrogen uptake conditions at two relatively stable locations in the lagoon. The results indicated that the influence of terrestrial organic matter was the maximum in the northern sector and was relatively limited at the central and southern part of the lagoon. In situ ¹⁵N uptake experiments (daytime) under biogeochemically stable conditions revealed that the N uptake by phytoplankton ranged between 0.24 and 1.01?mM?m^?3?h^?1 during pre-monsoon and post-monsoon seasons. New production and regenerated production in the shallow lagoon was also estimated by calculating f-ratios (ratio of nitrate assimilation by phytoplankton to total nitrogenous nutrient assimilation, have been estimated), which varied from 0.52 in the post-monsoon to 0.38 in the pre-monsoon. Lowering of the f-ratio from post- to pre-monsoon indicated a dominance of mineralisation over the new production.     

Persistent blooms of surf diatoms along the Pacific coast,USA

Productivity was studied in two diatom species, Chaetoceros armatum T. West and Asterionella socialis Lewin and Norris, which form persistent dense blooms in the surf zone along the Pacific coast of Washington and Oregon, USA. Past observations have shown that surf-diatom standing stock usually declines in summer along with concentrations of nitrate and ammonium. Using the ¹⁴C method, photosynthetic rates in natural surf samples were measured monthly for one year (October 1981 through September 1982) at a study site on the Washington coast. Also measured were temperature, salinity, dissolved nutrients, particulate carbon and nitrogen (used as estimates of phytoplankton C and N), and chlorophyll a. Assimilation numbers (P _max) were higher in summer (5 to 8 g C g^-1 chl a h^-1) than in winter (3 to 4gC). Specific carbon incorporation rates (µ_max) showed no obvious seasonality, mostly falling within the range of 0.09 to 0.13 g C g^-1 C(POC) h^-1. The discrepancy between the seasonal trends for chlorophyll-specific and carbon-specific rates reflects a change in the carbon-to-chlorophyll ratio. Because of seasonal differences in daylength and light intensity, daily specific growth rates () are thought to be higher in summer than in winter. Neither ammonium enrichment assays nor particulate carbon-to-nitrogen ratios provided convincing evidence for nitrogen limitation during summer, and the observed changes in diatom abundance cannot be explained on this basis. Both the high diatom concentrations and their seasonal variations probably are due mainly to factors other than growth rates; two factors considered important are diatom flotation and seasonal changes in wind-driven water transport. C. armatum usually dominates the phytoplankton biomass in the surf zone, and evidence suggests that this species is strongly dominant in terms of primary production.Contribution No. 1391 of the School of Oceanography, University of Washington, Seattle, Washington, USA     

Seasonal variations in the utilization of ammonium and nitrate by photoplankton in Vineyard Sound,Massachusetts, USA

The nitrogenous nutrition of the phytoplankton in Vineyeard Sound, Massachusetts, USA was investigated over a 15-month period. Highest rates of ammonium uptake were observed immediately prior to, or during, the diatom bloom periods, and with one exception were found in the <10 m size class. The saturating rate of ammonium uptake correlated well with temperature and gave Q₁₀ values of 2.6–3.2; correlations with ambient solar irradiation were not nearly so clear. Uptake rates of ammonium exceeded those of nitrate except during the winter bloom of the diatom Rhizosolenia delicatula; yet calculation of the f ratio revealed that nitrate was relatively important in the nitrogenous nutrition of the phytoplankton throughout the year.Contribution no. 5096 from the Woods Hole Oceanographic Institution     

Application of a 15N tracer method to the study of dissolved organic nitrogen uptake during spring and summer in Chesapeake Bay

The dissolved organic nitrogen (DON) pool in marine waters contains a diverse mixture of compounds. It is therefore difficult to accurately estimate planktonic uptake of DON using the limited number of radiolabeled compounds commercially available. We describe a method to estimate DON uptake rates using ¹⁵N-labeled DON recently released from phytoplankton. To make ¹⁵N-labeled DON, we incubated surface water with ¹⁵NH ₄ ⁺ and then isolated the DON, including any recently released DO¹⁵N, with ion retardation resin. This DON was then added to a freshly collected water sample from the same environment to quantify the rate of DON uptake. The technique was applied to investigate rates of DON uptake relative to inorganic nitrogen in the mesohaline Chesapeake Bay during May 1990 and August 1991. The May experiment took place after the spring bloom, and rates of DON uptake [ranging from 0.31 to 0.53 g-atom (g-at) Nl^-1 h^-1] often exceeded rates of NH ₄ ⁺ and NO ₃ ^- uptake combined. The rates of DON uptake at this time were higher than estimated bacterial productivity and were not correlated with bacterial abundance or bacterial productivity. They were, however, correlated with rates of NO ₃ ^- uptake. In May, we estimate that only 7 to 32% of DON uptake was a result of urea utilization. In contrast, in August, when regenerated nutrients predominate in Chesapeake Bay, rates of DON uptake (ranging from 0.14 to 0.51 g-atom Nl^-1 h^-1) were an average of 50% of the observed rates of NH ₄ ⁺ uptake. Consistent with the May experiment, rates of DON uptake were not correlated with bacterial production. A sizable fraction of DON uptake, however, appeared to be due to urea utilization; rates of urea uptake, measured independently, were equivalent to an average of 74% of the measured rates of DON uptake. These findings suggest that, during both periods of study, at least a fraction of the measured DON uptake may have been due to utilization by phytoplankton.     

Metabolic and blood characteristics of the hydrothermal vent tube-worm Riftia pachyptila

Specimens of the hydrothermal vent pogonophoran Riftia pachyptila Jones were collected by submersible at a depth of 2 600 m at the 21°N hydrothermal vent site on the East Pacific Rise (20°50N, 109°06W) in April and May of 1982. The worms were maintained in pressurized aquaria for up to 45 d for metabolic studies. Consumption of O₂ was regulated down to low P_{O 2} (oxygen partial pressure) values; O₂ consumption rates were 0.63 and 1.12 mol g^-1 wet wt h^-1 at 2.5° and 8°C, respectively; such rates were comparable to those previously measured for other pogonophorans. Intact specimens of R. pachyptila (including bacterial symbionts) did not consume significant amounts of CH₄ from the environment. The respiratory quotients, in the absence of added sulfide, indicated that metabolism was mainly heterotrophic. High rates of uptake of dissolved amino acids were recorded for one specimen. The total [CO₂] in the vascular blood and the Hb-containing coelomic fluid were high. Under anaerobic conditions, there were equilibrium distributions of pH, total [CO₂] and sulfide concentrations between the vascular blood and the coelomic fluid, apparently because these metabolites were readily exchanged between the two compartments. The vascular blood bound neither CH₄ nor H₂. However, sulfide was reversibly bound by both the vascular blood and coelomic fluid; because this binding depended strongly on pH (with a maximum at about 7.5), HS^- was probably the molecular species bound. Under anaerobic, but not aerobic conditions, the trophosome bound substantial amount of sulfide; thus, the high concentrations of sulfide in the trophosome may have resulted mainly from sulfide bound to sulfide oxidases under anaerobic conditions. The coelomic fluid had a relatively low buffering capacity (2.2 mmol CO₂pH^-1).     

Effect of nitrogen source on short-term light and dark CO2 uptake by a marine diatom

Based on a series of short-term incubations involving the marine diatom Chaetoceros simplex (Bbsm), precultured in NH ₄ ⁺ -, NO ₃ ^- -and urea-limited continuous cultures at several dilution rates, we found that both the short-term specific rate of ¹⁴CO₂ uptake and the amount of CO₂ fixed after 8- and 16-min incubations were unaffected by enrichment with NH ₄ ⁺ , urea, or NO ₃ ^- when NH ₄ ⁺ or urea were the preconditioning forms of N, but were slightly suppressed when the cells were first grown on NO ₃ ^- . Similar enrichments in the dark, however, led to significant CO₂ uptake under all conditions of NH ₄ ⁺ enrichment and to similarly enhanced CO₂ uptake, but only at high growth rates, when urea was the source of enrichment nitrogen. Our light results are contrary to some contemporary findings, but there does seem to be agreement that photosynthetic rates of rapidly growing phytoplankton will not be affected by exposure to pulses of nitrogen. Enhanced dark uptake, in contrast, appears to be characteristic of phytoplankton under all degrees of N limitation, and, as such, may be useful as an “all or nothing” index of the nitrogen status of natural waters. There is some indication that the index may be useful in determining both the form of and the degree of N limitation as well.     

Effects of light intensity on nitrate and nitrite uptake and excretion by Chaetoceros curvisetus

Michaelis-Menten uptake kinetics were observed at all light intensities. With constant illumination, the V_max and K₁ in nitrate uptake over the natural light intensity range of 0 to 2000 E were 0.343 g-at NO₃–N(g)^-1 at protein-N h^-1 and 26 E, respectively. Nitrate uptake was inhibited at higher light intensities. The K_s for nitrate uptake did not vary as a function of light intensity remaining relatively constant at 0.62 g-at NO₃–N 1^-1. With intermittent illumination, the V_mzx for light intensity in nitrate uptake over a light intensity range of 0 to 5000 E was 0.341 g-at NO₃–N(g)^-1-at protein-N h^-1. No inhibition of nitrate uptake was observed at higher than natural light intensities. Chaetoceros curvisetus will probably never experience light inhibition of nitrate uptake under natural conditions.     

Detrital pathways in a coral reef lagoon

Coral reef lagoons have generally been regarded as sinks for organic matter exported from more productive reef front and reef flat zones. The object of this study was to examine the importance of detritus as a carbon source for benthic communities in the lagoon at Davies Reef, central Great Barrier Reef. We report the results of seasonal measurements, taken in 1986, of bacterial numbers and production, protozoan numbers, community primary production and respiration in the sediments of Davies Reef lagoon. Deposition rates of organic matter in the lagoon were also measured. Deposition rates (±1 SE) of carbon ranged from 9.2 (±1.5) to 140.7 (±10.3) mg Cm^-2d^-1. Deposition rates were highest in winter and spring, lowest in summer. Rates of bacterial production ranged from 4.7 (±0.2) pmol thymidine incorporated g^-1 dry wt (DW) h^-1 in winter to 23.5 (±1.0) pmol thymidine incorporated g^-1 DW h^-1 in spring. The number of ciliates ranged from 65 (±10) to 356 (±50) cm^-3 through the year and the number of large (20 m) flagellates from 38 (±7) to 108 (±16) cm^-3. There were no clear relationships between the sediment organic content, detrital input or temperature and the rates of bacterial processes, community metabolism or the standing stocks of microbes in the lagoon. The relative significance of detritus and in situ primary production as sources of carbon in the lagoon varied with season. In summer and autumn, detritus was less important than primary production as a source of carbon (4 to 27% of total carbon input). In winter and spring, detritus input became more significant in supply of carbon to the sediments (32 to 67% of the total carbon input). The lagoon does not simply act as a sink for carbon exported from the reef flat. We calculate that only 5% of the net reef flat primary production reached lagoon sediments in summer, but nearly 40% in winter.