Genomic erosion in a demographically recovered bird species during conservation rescue

The pink pigeon (Nesoenas mayeri) is an endemic species of Mauritius that has made a remarkable recovery after a severe population bottleneck in the 1970s to early 1990s. Prior to this bottleneck, an ex situ population was established from which captive-bred individuals were released into free-living subpopulations to increase population size and genetic variation. This conservation rescue led to rapid population recovery to 400–480 individuals, and the species was twice downlisted on the International Union for the Conservation of Nature (IUCN) Red List. We analyzed the impacts of the bottleneck and genetic rescue on neutral genetic variation during and after population recovery (1993–2008) with restriction site-associated sequencing, microsatellite analyses, and quantitative genetic analysis of studbook data of 1112 birds from zoos in Europe and the United States. We used computer simulations to study the predicted changes in genetic variation and population viability from the past into the future. Genetic variation declined rapidly, despite the population rebound, and the effective population size was approximately an order of magnitude smaller than census size. The species carried a high genetic load of circa 15 lethal equivalents for longevity. Our computer simulations predicted continued inbreeding will likely result in increased expression of deleterious mutations (i.e., a high realized load) and severe inbreeding depression. Without continued conservation actions, it is likely that the pink pigeon will go extinct in the wild within 100 years. Conservation rescue of the pink pigeon has been instrumental in the recovery of the free-living population. However, further genetic rescue with captive-bred birds from zoos is required to recover lost variation, reduce expression of harmful deleterious variation, and prevent extinction. The use of genomics and modeling data can inform IUCN assessments of the viability and extinction risk of species, and it helps in assessments of the conservation dependency of populations.     

Comparative water use of native and invasive plants at multiple scales: a global meta-analysis

Ecohydrology and invasive ecology have become increasingly important in the context of global climate change. This study presents the first in-depth analysis of the water use of invasive and native plants of the same growth form at multiple scales: leaf, plant, and ecosystem. We reanalyzed data for several hundred native and invasive species from over 40 published studies worldwide to glean global trends and to highlight how patterns vary depending on both scale and climate. We analyzed all pairwise combinations of co-occurring native and invasive species for higher comparative resolution of the likelihood of an invasive species using more water than a native species and tested for significance using bootstrap methods. At each scale, we found several-fold differences in water use between specific paired invasive and native species. At the leaf scale, we found a strong tendency for invasive species to have greater stomatal conductance than native species. At the plant scale, however, natives and invasives were equally likely to have the higher sap flow rates. Available data were much fewer for the ecosystem scale; nevertheless, we found that invasive-dominated ecosystems were more likely to have higher sap flow rates per unit ground area than native-dominated ecosystems. Ecosystem-scale evapotranspiration, on the other hand, was equally likely to be greater for systems dominated by invasive and native species of the same growth form. The inherent disconnects in the determination of water use when changing scales from leaf to plant to ecosystem reveal hypotheses for future studies and a critical need for more ecosystem-scale water use measurements in invasive- vs. native-dominated systems. The differences in water use of native and invasive species also depended strongly on climate, with the greater water use of invasives enhanced in hotter, wetter climates at the coarser scales.     

Unraveling the complexities of variation in female mate preference for vertical bars in the swordtail, Xiphophorus cortezi

Investigations into the nature of mate choice suggest that variation in female mate preferences is often context dependent, varying in response to genetic and environmental influences on female condition as well as to external environmental stimuli. Determining whether variation in female mate preference is adaptive requires understanding the variables involved that produce this variation and how they interact. Comparative, multivariate studies of wild-caught adult females can be used as initial assessments of variation in female mate preferences, providing valuable insights into the parameters that influence female preferences under natural conditions. We examined variation in female preferences for the pigment pattern vertical bars across five populations of the swordtail, Xiphophorus cortezi. The populations we examined are genetically differentiated and varied in the frequency of males and females with bars. We also considered a variable indicative of within-individual variation (size, as influenced by age) and a variable that varies across individuals (genotype for vertical bars: barred or barless). Using Akaike information criterion, all candidate models explaining variation in strength of preference included female bar state, female size, and population. We suggest that a combination of genetic (bar state) and environmental (female size) conditions influenced how they responded to experience with both male phenotypes in X. cortezi. Future studies should examine the possibility that barred and barless females respond differently over an environmental gradient.     

Seasonal ozone behavior along an elevation gradient in the Colorado Front Range Mountains

Ambient surface ozone was monitored for one year at a series of seven sites along an elevation gradient from 1600 m to 3500 m above sea level (ASL) in Boulder County, Colorado. Spatial variability of ozone, quantified as the root mean squared deviation of hourly ozone per kilometer horizontal separation, decreased with elevation and distance from local sources, validating the assumption that (except at the City of Boulder (BO) site) the results of the study are representative of the Colorado Front Range. The northern hemisphere (NH) tropospheric spring ozone peak was clearly apparent in late April and early May and affected ozone at all elevations. Ozone consistently increased with elevation during winter, with a mean monthly rate of 1.5 ppbv per 100 m elevation. In summer, this monotonic increase in ozone with elevation was not observed; instead mean monthly ozone increased in two steps, by ～15 ppbv between 1610 m and 1940 m ASL and by ～10 ppbv between 3350 m and 3530 m ASL to a maximum of 60 ppbv. The amplitude of the diurnal ozone cycle decreased with increasing elevation. Average summertime diurnal swings in ozone concentration had a magnitude of 29 ppbv at 1610 m ASL, and 7–16 ppbv at the mid-elevation sites. In winter a diurnal cycle was observed only at the BO site, ozone concentrations at the remaining six locations changed on a multi-day timescale, indicating regional background behavior as the primary factor for wintertime ozone. Even the highest elevation site was influenced by transported urban air pollution in summer, indicated by the average 5 ppbv diurnal increase in ozone. Ozone exposure at the mid- to high-elevation sites in many instances approached and exceeded the 8-h National Ambient Air Quality Standard of 75 ppbv. The elevated ozone levels along this transect were interpreted to be caused by the confounding effects of the high elevation of these sites, increased ozone in long-range transported air, and anthropogenic ozone production in air transported from the nearby urban and suburban areas east of the Colorado Front Range Mountains.     

Exploratory Analysis of the Winter Chemistry of Five Lakes on the North Slope of Alaska1

Abstract: Lakes are important water resources on the North Slope of Alaska. Freshwater is required for oilfield production as well as exploration, which occurs largely on ice roads and pads. Since most North Slope lakes are shallow, the quantity and quality of the water under ice at the end of winter are important environmental management issues. Currently, water‐use permits are a function of the presence of overwintering fish populations, and their sensitivity to low oxygen concentrations. Sampling of five North Slope lakes during the winter of 2004‐2005 shed some light on the winter chemistry of four lakes that were used as water supplies and one undisturbed lake. Field analysis was conducted for oxygen, conductivity, pH, and temperature throughout the lake depth, as well as ice thickness and water depth. Water samples were retrieved from the lakes and analyzed for Na, Ca, K, Mg, Fe, dissolved‐organic carbon, and alkalinity in the laboratory. Lake properties, rather than pumping, were the best predictors of oxygen depletion, with the highest dissolved‐oxygen levels maintained in the lake with the lowest concentration of constituents. Volume weighted mean dissolved‐oxygen concentrations ranged from 4 to 94% of saturation in March. Dissolved oxygen and specific conductance data suggested that the lakes began to refresh in May.     

An Evaluation of the Effects of Soil Characteristics on Mitigation and Restoration Involving Blue Elderberry, <Emphasis Type="Italic">Sambucus mexicana</Emphasis>

We conducted field surveys and laboratory analyses to test the effects of soil characteristics in habitat mitigation sites and natural sites on the growth and condition of blue elderberry (Sambucus mexicana), which is the sole host plant for the federally threatened Valley elderberry longhorn beetle (Desmocerus californicus dimorphus). Thirty mitigation and 16 natural sites were selected throughout the range of the beetle. We found that although plant relative growth rates were comparable between mitigation sites and a natural site, mitigation sites contained substantially less soil nutrients than mitigation sites. Within mitigation sites, elderberry health and growth were positively correlated with the amount of total nitrogen in soils and less strongly with other soil nutrients and soil moisture. Analyses demonstrated reductions in the relative growth rate of elderberry as mitigation sites aged, and that soil nutrients and soil moisture became depleted over time. For mitigation sites, it took approximately seven years to develop basal stem diameters that have been linked to successful beetle colonization. Mitigation sites have smaller shrubs than natural sites and growth slows as mitigation sites age, thus delaying convergence of conditions between natural and mitigation sites. Analyses of soil particle size and whether sites were within the 100-year floodplain (as an indicator of riparian conditions) were inconclusive. We recommend investigating fertilizing and optimum planting densities for elderberry at restoration and mitigation sites, as well as increasing the duration of irrigation and monitoring.     

Ethical issues associated with prenatal screening using non-invasive prenatal testing for sex chromosome aneuploidy

Prenatal screening for sex chromosome aneuploidies (SCAs) is increasingly available through expanded non-invasive prenatal testing (NIPT). NIPT for SCAs raises complex ethical issues for clinical providers, prospective parents and future children. This paper discusses the ethical issues that arise around NIPT for SCAs and current guidelines and protocols for management. The first section outlines current practice and the limitations of NIPT for SCAs. It then outlines key guidelines before discussing the ethical issues raised by this use of NIPT. We conclude that while screening for SCAs should be made available for people seeking to use NIPT, its implementation requires careful consideration of what, when and how information is provided to users.     

Assessing ecological function in the context of species recovery

Species interactions matter to conservation. Setting an ambitious recovery target for a species requires considering the size, density, and demographic structure of its populations such that they fulfill the interactions, roles, and functions of the species in the ecosystems in which they are embedded. A recently proposed framework for an International Union for Conservation of Nature Green List of Species formalizes this requirement by defining a fully recovered species in terms of representation, viability, and functionality. Defining and quantifying ecological function from the viewpoint of species recovery is challenging in concept and application, but also an opportunity to insert ecological theory into conservation practice. We propose 2 complementary approaches to assessing a species’ ecological functions: confirmation (listing interactions of the species, identifying ecological processes and other species involved in these interactions, and quantifying the extent to which the species contributes to the identified ecological process) and elimination (inferring functionality by ruling out symptoms of reduced functionality, analogous to the red-list approach that focuses on symptoms of reduced viability). Despite the challenges, incorporation of functionality into species recovery planning is possible in most cases and it is essential to a conservation vision that goes beyond preventing extinctions and aims to restore a species to levels beyond what is required for its viability. This vision focuses on conservation and recovery at the species level and sees species as embedded in ecosystems, influencing and being influenced by the processes in those ecosystems. Thus, it connects and integrates conservation at the species and ecosystem levels.     

A mechanism for female choice of large males in the treefrog Hyla chrysoscelis

Summary In this study, we combine both field and laboratory experiments to address the effects of female preference for certain call characteristics on a large-male mating advantage in the treefrog H. chrysoscelis. In laboratory-choice experiments, females always chose the call with the lower fundamental frequency when call rate and call intensity were held constant and the difference in frequency between the two calls was 15%. The lower frequency call was preferred by 8 out of 12 females when the difference in fundamental frequency was 7.4%. These results are consistent with field comparisons of the size of unmated males calling within 2 m of a mated male: Male body size was negatively correlated with fundamental frequency and the greater the size difference, the more likely that the larger male mated. In field choice experiments, females preferred males with higher call rates. Since size differences between males used in this experiment averaged only 2.3 mm, we would not expect the fundamental frequency of a male's call to be the best predictor of mating success. Laboratory results demonstrated that call rate could override female preference for the low frequency call over the high frequency call, while intensity could at least dilute this preference. However, individual males in the field varied both call rate and the call intensity as perceived by the female. We suggest that the interaction between call rate, male size and mating success should be studied further through the use of field-choice experiments.