Modeling genetic benefits and financial costs of integrating biobanking into the conservation breeding of managed marsupials

Managed breeding programs are an important tool in marsupial conservation efforts but may be costly and have adverse genetic effects in unavoidably small captive colonies. Biobanking and assisted reproductive technologies (ARTs) could help overcome these challenges, but further demonstration of their potential is required to improve uptake. We used genetic and economic models to examine whether supplementing hypothetical captive populations of dibblers (Parantechinus apicalis) and numbats (Myrmecobius fasciatus) with biobanked founder sperm through ARTs could reduce inbreeding, lower required colony sizes, and reduce program costs. We also asked practitioners of the black-footed ferret (Mustela nigripes) captive recovery program to complete a questionnaire to examine the resources and model species research pathways required to develop an optimized biobanking protocol in the black-footed ferret. We used data from this questionnaire to devise similar costed research pathways for Australian marsupials. With biobanking and assisted reproduction, inbreeding was reduced on average by between 80% and 98%, colony sizes were on average 99% smaller, and program costs were 69- to 83-fold lower. Integrating biobanking made long-standing captive genetic retention targets possible in marsupials (90% source population heterozygosity for a minimum of 100 years) within realistic cost frameworks. Lessons from the use of biobanking technology that contributed to the recovery of the black-footed ferret include the importance of adequate research funding (US$4.2 million), extensive partnerships that provide access to facilities and equipment, colony animals, appropriate research model species, and professional and technical staff required to address knowledge gaps to deliver an optimized biobanking protocol. Applied research investment of A$133 million across marsupial research pathways could deliver biobanking protocols for 15 of Australia's most at-risk marsupial species and 7 model species. The technical expertise and ex situ facilities exist to emulate the success of the black-footed ferret recovery program in threatened marsupials using these research pathways. All that is needed now for significant and cost-effective conservation gains is greater investment by policy makers in marsupial ARTs.     

Change in soluble phosphorus in soils following fertilization is dependent on initial Mehlich-3 phosphorus

There is a lack of information on how fertilization and initial Mehlich-3 phosphorus (M3P) interact to affect water soluble P (WSP) in soils. Our objectives were to (i) quantify the relationship between WSP and M3P for four textural diverse benchmark soils of North Carolina (NC) and (ii) quantify the change in WSP concentrations following P additions to soils over a wide range of initial M3P. Soils known to represent a wide range in M3P were collected from an Autryville loamy sand (loamy, siliceous, subactive, thermic Arenic Paleudults), Wasda muck (fine-loamy, mixed, semiactive, acid, thermic Histic Humaquepts), Georgeville silt loam (fine, kaolinitic, thermic Typic Kanhapludults), and Pacolet sandy clay loam (fine, kaolinitic, thermic Typic Kanhapludults) and analyzed for M3P, Fe, Al, and WSP. An incubation study was also conducted where four samples representing a range in M3P from each series were fertilized at rates of 150 and 300 kg P ha(-1), and WSP was measured at 1, 7, and 21 d after fertilization. The Wasda muck exhibited a change point at 115 mg P kg(-1) across a broad range of M3P concentrations (60-238 mg kg(-1)) while Autryville, Georgeville, and Pacolet series (with ranges in M3P of 32-328, 119-524, 0-1034 mg P kg(-1), respectively) maintained linear relationships between WSP and M3P. For the fertilized soils, significant increases in WSP occurred regardless of P rate. Yet, WSP concentrations were greater in soils with greater initial M3P. Thus, these data suggest that shifting animal waste applications to fields of relatively lower M3P concentrations would have an immediate impact on reducing risk for P losses, if all other factors are equal.     

Two Measured Parameters Correlated to Participation Rates in Curbside Recycling Schemes in the UK

Local authorities in the United Kingdom are currently changing their approach towards recycling as they attempt to meet legislative targets. An important part of this drive is the provision of an effective curbside recycling service and it is vital to understand the parameters that influence the performance of the system offered. In this article, three primary datasets, collected from over 1400 households each, are examined for parameters correlated to participation rates. Two measured parameters were found that are not commonly identified in previous studies of curbside recycling schemes, and they are shown to merit further investigation as useful tools for planning purposes. One is the number of types of material collected; participation rates are greater for schemes collecting more materials. The second is the number of households situated on the same road; the lower the number, the higher the participation rate. In both cases, evidence of the measured correlation is presented, justifying their usefulness for planning. The multiple underlying factors causing the correlations are not identified here, but suggestions are made for further studies.     

Use of Airborne γ-Ray Spectrometry for Environmental Assessment of the Rehabilitated Nabarlek Uranium Mine, Australia

This article describes an airborne γ survey of a 7 × 5 km region around the rehabilitated Nabarlek uranium mine in northern Australia. An unusually tight line spacing (100 m) and low aircraft height (50 m) were used, enabling the survey to distinguish man-made structures such as ponds and accommodation areas, as well as creek lines. Positive correlations between airborne data and ground-based readings enabled an estimation of the average absorbed dose rate arising from terrestrial γ radiation over large areas of the site to be derived. For the fenced minesite area this estimate was 0.31 μ Gy hr^{− 1}. The airborne survey data were found to be invaluable in helping to plan further ground-level investigations and showed promise as an assessment tool for rehabilitated minesites.     

Relationships between analytical methods utilized as tools in the evaluation of landfill waste stability

In this study, the refuse from 12 landfills of various ages ranging from fresh refuse to material 11 years old was collected, and changes in the bio-stability parameters were determined. The parameters measured included cellulose, lignin, biochemical methane potential (BMP) and volatile solids, along with plastics. These parameters, along with the cellulose to lignin ratio were compared to determine which were most indicative of the bio-stability of the refuse. Lignin and volatile solids measurements were affected by plastics in refuse samples. Plastics increased both lignin and volatile solids measurements by approximately 10%. Cellulose and volatile solids measurements correlated well with age, each other, and with BMP measurements and were therefore considered the best parameters to determine stability. Data for the Riverbend landfill, a landfill with a moisture content of 48%, which is similar to that of bioreactor landfills, showed that degradation was nearly complete after 5 years as indicated by low values for cellulose and BMP.     

Simulation of Combined Best Management Practices and Low Impact Development for Sustainable Stormwater Management1

Damodaram, Chandana, Marcio H. Giacomoni, C. Prakash Khedun, Hillary Holmes, Andrea Ryan, William Saour, and Emily M. Zechman, 2010. Simulation of Combined Best Management Practices and Low Impact Development for Sustainable Stormwater Management. Journal of the American Water Resources Association (JAWRA) 1-12. DOI: 10.1111/j.1752-1688.2010.00462.x Abstract: Urbanization causes increased stormwater runoff volumes, leading to erosion, flooding, and the degradation of instream ecosystem health. Although Best Management Practices (BMPs) are used widely as a means for controlling flood runoff events, Low Impact Development (LID) options have been proposed as an alternative approach to better mimic the natural flow regime by using decentralized designs to control stormwater runoff at the source, rather than at a centralized location in the watershed. For highly urbanized areas, LID practices such as rainwater harvesting, green roofs, and permeable pavements can be used to retrofit existing infrastructure and reduce runoff volumes and peak flows. This paper describes a modeling approach to incorporate these LID practices in an existing hydrologic model to estimate the effects of LID choices on streamflow. The modeling approach has been applied to a watershed located on the campus of Texas A&M University in College Station, Texas, to predict the stormwater reductions resulting from retrofitting existing infrastructure with LID technologies. Results demonstrate that use of these LID practices yield significant stormwater control for small events and less control for flood events. A combined BMP-LID approach is tested for runoff control for both flood and frequent rainfall events.     

Fluorescent dye imaging of the volume sampled by single well forced-gradient tracer tests evaluated in a laboratory-scale aquifer physical model

This study presents a new method to visualise forced-gradient tracer tests in 2-D using a laboratory-scale aquifer physical model. Experiments were designed to investigate the volume of aquifer sampled in vertical dipole flow tracer tests (DFTT) and push-pull tests (PPT), using a miniature monitoring well and straddle packer arrangement equipped with solute injection and recovery chambers. These tests have previously been used to estimate bulk aquifer hydraulic and transport properties for the evaluation of natural attenuation and other remediation approaches. Experiments were performed in a silica glass bead-filled box, using a fluorescent tracer (fluorescein) to deduce conservative solute transport paths. Digital images of fluorescein transport were captured under ultraviolet light and processed to analyse tracer plume geometry and obtain point-concentration breakthrough histories. Inorganic anion mixtures were also used to obtain conventional tracer breakthrough histories. Concentration data from the conservative tracer breakthrough curves was compared with the digital images and a well characterised numerical model. The results show that the peak tracer breakthrough response in dipole flow tracer tests samples a zone of aquifer close to the well screen, while the sampling volume of push-pull tests is limited by the length of the straddle packers used. The effective sampling volume of these single well forced-gradient tests in isotropic conditions can be estimated with simple equations. The experimental approach offers the opportunity to evaluate under controlled conditions the theoretical basis, design and performance of DFTTs and PPTs in porous media in relation to measured flow and transport properties.     

Brominated flame retardants in the Australian population: 1993-2009

Brominated flame retardants, including hexabromocyclododecane (HBCD) and polybrominated diphenyl ethers (PBDEs) are used to reduce the flammability of a multitude of electrical and electronic products, textiles and foams. The use of selected PBDEs has ceased, however, use of decaBDE and HBCD continues. While elevated concentrations of PBDEs in humans have been observed in Australia, no data is available on other BFRs such as HBCD. This study aimed to provide background HBCD concentrations from a representative sample of the Australian population and to assess temporal trends of HBCD and compare with PBDE concentrations over a 16 year period. Samples of human milk collected in Australia from 1993 to 2009, primarily from primiparae mothers were combined into 12 pools from 1993 (2 pools); 2001; 2002/2003 (4 pools); 2003/2004; 2006; 2007/2008 (2 pools); and 2009. Concentrations of ∑HBCD ranged from not quantified (nq) to 19 ng g(-1)lipid while α-HBCD and γ-HBCD ranged from nq to 10 ng g(-1)lipid and nq to 9.2 ng g(-1)lipid. β-HBCD was detected in only one sample at 3.6 ng g(-1)lipid while ∑(4)PBDE ranged from 2.5 to 15.8 ng g(-1)lipid. No temporal trend was apparent in HBCD concentrations in human milk collected in Australia from 1993 to 2009. In comparison, PBDE concentrations in human milk show a peak around 2002/03 (mean ∑(4)PBDEs=9.6 ng g(-1)lipid) and 2003/04 (12.4 ng g(-1)lipid) followed by a decrease in 2007/08 (2.7 ng g(-1)lipid) and 2009 (2.6 ng g(-1)lipid). In human blood serum samples collected from the Australian population, PBDE concentrations did not vary greatly (p=0.441) from 2002/03 to 2008/09. Continued monitoring including both human milk and serum for HBCD and PBDEs is required to observe trends in human body burden of HBCD and PBDEs body burden following changes to usage.     

Integration, synthesis and climate change adaptation: a narrative based on coastal wetlands at the regional scale

The idea that integration and synthesis are critical for designing climate change adaptation and mitigation is well entrenched conceptually. Here, we review the concepts of adaptation, synthesis and integration and apply them to the case study of coastal wetlands in South East Queensland, Australia. The distribution and condition of coastal wetlands will change as climate changes. This will create conservation challenges and economic costs, but these can be minimised by drawing from a broad sectoral perspective in undertaking adaptation planning and by ensuring integration into policy. Our review indicates that adaptations to sea level rise that are focussed on wetland and biodiversity conservation are likely to have impacts for urbanisation patterns. Planning regulations that provide spatial buffering around wetlands may give rise to more compact urban forms that may lead to reductions in the cost of defence against sea level rise, reduce energy usage per person and provide more green space. However, more compact urban forms could exacerbate heat island effects and place greater burden on the economically disadvantaged as, for example, single-family homes become more expensive. Planning for climate change needs to balance these equity and cross-sectoral issues in order to reduce the likelihood of unforeseen negative consequences.     

Validation of an evacuated canister method for measuring part-per-billion levels of chemical warfare agent simulants

The National Institute for Occupational Safety and Health (NIOSH) research on direct-reading instruments (DRIs) needed an instantaneous sampling method to provide independent confirmation of the concentrations of chemical warfare agent (CWA) simulants. It was determined that evacuated canisters would be the method of choice. There is no method specifically validated for volatile organic compounds (VOCs) in the NIOSH Manual of Analytical Methods. The purpose of this study was to validate an evacuated canister method for sampling seven specific VOCs that can be used as a simulant for CWA agents (cyclohexane) or influence the DRI measurement of CWA agents (acetone, chloroform, methylene chloride, methyl ethyl ketone, hexane, and carbon tetrachloride [CCl4]). The method used 6-L evacuated stainless-steel fused silica-lined canisters to sample the atmosphere containing VOCs. The contents of the canisters were then introduced into an autosampler/preconcentrator using a microscale purge and trap (MPT) method. The MPT method trapped and concentrated the VOCs in the air sample and removed most of the carbon dioxide and water vapor. After preconcentration, the samples were analyzed using a gas chromatograph with a mass selective detector. The method was tested, evaluated, and validated using the NIOSH recommended guidelines. The evaluation consisted of determining the optimum concentration range for the method; the sample stability over 30 days; and the accuracy, precision, and bias of the method. This method meets the NIOSH guidelines for six of the seven compounds (excluding acetone) tested in the range of 2.3-50 parts per billion (ppb), making it suitable for sampling of these VOCs at the ppb level.