Effects of water velocity on bulk water quality and biofilm population structure in drinking water distribution systems北大核心CSCD

To study the effect of flow velocity on drinking water distribution systems, bulk water quality was monitored over 28 days, biomass was measured, and 16S rDNA was sequenced on the 28th day using a water distribution simulation system. The relationship between bulk water quality and biofilm was statistically analyzed. Flow velocity of 0.5 m/s yielded the most total organic carbon (TOC) (5.26 ± 0.17 mg/L) in the bulk water, the most bulk water bacteria (lg (n+1/mL-1) = 4.79 ± 0.02), the worst bulk water quality, and the most biofilm bacteria (lg (n+1/cm-2) = 5.48 ± 0.06). A Pearson correlation analysis showed the total number of biofilm bacteria was positively correlated with conductivity (R = 0.73, P < 0.01), turbidity (R = 0.87, P < 0.001), TOC (R = 0.94, P < 0.001), and total bacteria (R = 0.92, P < 0.001), and was negatively correlated with residual chlorine (R = -0.68, P < 0.05). Biofilm diversity was high under the low (0.1 m/s) and high (2.5 m/s) flow rates, but the bacterial diversity of biofilm was the lowest at the 0.5 m/s flow rate, in which Proteobacteria dominated the biofilm community structure. These results suggest that flow velocity affects bulk water quality and biofilm population structure, and water quality and biofilm population structure are interrelated, which provides the theoretical basis for research on biofilms in drinking water distribution systems. © 2018 Science Press. All rights reserved.     

Heterologous overexpression of Populus euphratica BAK1;1 gene enhanced resistance to Pst DC3000 in tobacco北大核心CSCD

BRI1-ASSOCIATED RECEPTORKINASE1(BAK1), a leucine-rich repeat (LRR) receptor protein kinase, plays a significant role in brassinosteroid (BR) signaling. Furthermore, it combines with other LRR-RLKs protein to initiate immune response in plants. The objective of this study was to (1) investigate the function of the Populus euphratica BAK1;1 gene in the resistance of transgenic tobacco to Pseudomonas syringae pv. tomato DC3000 (Pst DC3000) and (2) discuss the regulation pathway of PeBAK1;1 involved in the resistance to plant pathogen. We cloned the cDNA sequence of the P. euphratica PeBAK1;1 gene, constructed the pBI121-35S::PeBAK1;1 over-expression vector, and then transformed it into wild-type tobacco by Agrobacterium-mediated transformation to obtain PeBA K 1;1-overexpressing transgenic tobacco plants. The bioinformatic analysis showed that the PeBAK1;1 protein contained all the structural features of the plant SERK family. The phylogenetic tree showed that PeBAK1;1 has the highest sequence homology with PtBAK1. The gene expression profile results indicated that the expression of PeBAK1;1 in the root was higher than that in the leaf and stem. The wild-type tobacco plants showed an obvious susceptibility to Pst DC3000, whereas the transgenic plants exhibited enhanced resistance to Pst DC3000. Compared with that of the wild-type (WT), the real-time PCR and quantitative real-time PCR analysis revealed that the expression of pathogenesis-related genes (including PR1, PR3, PR4, and PR5), BAK1-interacting receptor kinase 1 gene, and BONZAI1 gene was upregulated in 35S::PeBAK1;1 transgenic tobacco plants. In conclusion, the PeBAK1;1 gene plays a positive regulatory role in 35S::PeBAK1;1 transgenic tobacco against Pst DC3000, which can enhance the resistance of plants to pathogen. © 2018 Science Press. All rights reserved.     

Research progress in microbial cytochrome P450 and xenobiotic metabolism北大核心CSCD

Cytochrome P450 (CYP450s) is a type of heme-mercaptide protein superfamily, which is distributed widely in animals, plants, and microorganisms. CYP450s can oxidize and degrade many exogenous compounds such as drugs, herbicides, pesticides, some persistent organic pollutants, and so on. Based on recent researches, this paper reviews the nomenclature, classification, structure, and catalytic mechanism of P450 enzymes, and summarizes the research progresses in the metabolism and biodegradation of xenobiotics using P450 enzymes from microorganisms. The nomenclature and classification of the P450 gene superfamily mainly rely on the similarities of amino acid sequences. Although the structures of P450 are conserved, their recognition sites towards to the substrates are variable. This is also the structural basis for the catalytic diversities of P450 enzymes. Few P450 enzymes from bacteria and fungi can metabolize and degrade xenobiotics such as polycyclic aromatic hydrocarbons, herbicides, and so on. However, these P450 enzymes are less likely be used in practical applications because of their low catalytic activities. In the future, more P450 enzymes with high degradable efficiencies towards xenobiotics are needed to be obtained using multiple omics tools or modifying the existing P450 enzymes, to achieve the bioremediation of the environment. © 2018 Science Press. All rights reserved.     

Carbon dioxide and methane emission from subsurface peatlands and its controlling factors北大核心CSCD

Peatland is an efficient carbon dioxide (CO2) sink on the continent and plays an important role in global carbon cycle. Climate change and human activities, two of the notable global environmental issues, have accelerated the degradation of peatlands during recent years. Global warming will increase the rate of aerobic decomposition in the surface of peatlands. Carbon stored in the subsurface of peatlands will be metabolized if the climatic conditions become favorable for decomposition. This study reviewed the carbon circle of subsurface peatland in natural environment and in environments disturbed by human activity or climate change. Furthermore, the major factors (environmental and human factors) that affect the carbon cycle were also discussed. According to a previous study, subsurface peatland will rapidly participate in the carbon cycle when the peatland is degraded. Water level, vegetation, and temperature were the main natural factors affecting the carbon cycle, whereas drainage, farming, and grazing were the main anthropogenic factors. Further studies should focus on different soil layer carbon dynamics, inorganic carbon content, and conservation and restoration of peatlands. The study methods should be a combination of macro with micro scale and focus on developing deep peat research techniques. Most of the previous studies focused on greenhouse gas emission and their response factors in short-term experiments. Thus, the mechanism and process of subsurface carbon are not clear and needs further study. © 2018 Science Press. All rights reserved.     

Effects of different mowing frequencies on soil carbon and nitrogen changes in leymus chinensis steppe of Hulun Buir北大核心CSCD

Mowing is the main management of Hulun Buir grasslands in Inner Mongolia; therefore, understanding the changes of soil organic carbon (SOC), total nitrogen (TN), and carbon sequestration under different mowing frequencies will provide an important scientific basis for grassland carbon sink management in Inner Mongolia. Three treatment plots were devised in the study area, including enclosed sample (Y), mowing every other year (2G), and mowing once a year (1G), where SOC, TN content and storage were investigated. The results showed that with increased mowing frequency, the SOC and TN content showed a decreasing trend in the 0-30 cm depth soil layer. The SOC and TN content were different in each soil layer, which decreased gradually with increasing soil depth in Y and 2G plots, whereas increased gradually in 1G plots. The soil carbon storage was significantly correlated with the soil nitrogen storage, and both showed a significant linear decrease with increased mowing frequency, which showed as carbon and nitrogen loss. In 2G plots, the soil carbon storage decreased by 17.1% and soil nitrogen storage decreased by 20.8%. In 1G plots, the soil carbon storage decreased by 21.6% and soil nitrogen storage decreased by 29.3%. The results showed that the change of soil carbon and nitrogen was sensitive to mowing frequency for the Hulun Buir grassland. It is possible to reduce the loss of carbon and nitrogen by reasonably controlling mowing frequency, and the sustainable use of grassland could be achieved with appropriate fertilization. Keywords. © 2018 Science Press. All rights reserved.     

Dynamics of soil organic matter in primary and secondary forest succession on sandy soils in The Netherlands: An application of the ROMUL model

We applied the simulation model ROMUL of soil organic matter dynamics in order to analyse and predict forest soil organic matter (SOM) changes following stand growth and also to identify gaps of data and modelling problems. SOM build-up was analysed (a) from bare sand to forest soil during a primary succession in Scots pine forest and (b) on mature forest soil under Douglas fir plantations as an example of secondary succession in The Netherlands. As some of the experimental data were unreliable we compiled a set of various scenarios with different soil moisture regime, initial SOM pools and amount and quality of above and below ground litter input. This allowed us to find the scenarios that reflect the SOM dynamics more realistically. In the Scots pine forest, total litter input was estimated as 0.50 kg m⁻² year⁻¹. Two scenarios were defined for the test runs: (a) forest floor moisture regimes—‘dry, mesic and hydric’ and (b) augmenting a root litter pool with three ratios of needles and branches to roots: 1:1, 1:1.5 and 1:2.0. The scenario finally compiled had the following characteristics: (a) climate for dry site with summer drought and high winter moisture of forest floor; (b) a litter input of 0.25 kg m⁻² year⁻¹ above ground and 0.50 kg m⁻² year⁻¹ below ground; (c) a low nitrogen and ash content in all litter fall fractions. The test runs for the estimation of the initial SOM pools and the amount and proportion of above and below ground litter fall were also performed in the Douglas fir plantation. The inputs of above ground litter tested in various combinations were 0.30 and 0.60 kg m⁻² year⁻¹, and below ground litter 0.30, 0.60 and 0.90 kg m⁻² year⁻¹. The scenario that fitted the experimental data had an SOM pool of 20–25 kg m⁻², an aboveground litter input of 0.6 kg m⁻² year⁻¹and a below ground litter input of 0.9 kg m⁻² year⁻¹. The long-term simulation corresponded well with the observed patterns of soil organic matter accumulation associated with the forest soil development in primary and secondary succession. During primary succession in Scots pine forest on dry sand there is a consistent accumulation of a raw humus forest floor. The soil dynamics in the Douglas fir plantation also coincide with the observed patterns of SOM changes during the secondary succession, with SOM decreasing significantly under young forest, and SOM being restored in the older stands.     

Using the expert model PERPEST to translate measured and predicted pesticide exposure data into ecological risks

An important topic in the registration of pesticides and the interpretation of monitoring data is the estimation of the consequences of a certain concentration of a pesticide for the ecology of aquatic ecosystems. Solving these problems requires predictions of the expected response of the ecosystem to chemical stress. Up until now, a dominant approach to come up with such a prediction is the use of simulation models or safety factors. The disadvantage of the use of safety factors is a crude method that does not provide any insight into the concentration–response relationships at the ecosystem level. On the other hand, simulation models also have serious drawbacks like that they are often very complex, lack transparency, their implementation is expensive and there may be a compilation of errors, due to uncertainties in parameters and processes. In this paper, we present the expert model prediction of the ecological risks of pesticides (PERPEST) that overcomes these problems. It predicts the effects of a given concentration of a pesticide based on the outcome of already performed experiments using experimental ecosystems. This has the great advantage that the outcome is more realistic. The paper especially discusses how this model can be used to translate measured and predicted concentrations of pesticides into ecological risks, by taking data on measured and predicted concentrations of atrazine as an example. It is argued that this model can be of great use to evaluate the outcome of chemical monitoring programmes (e.g. performed in the light of the Water Framework Directive) and can even be used to evaluate the effects of mixtures.     

Population biology and life strategies of Chlorophthalmus agassizii Bonaparte, 1840 (Pisces: Osteichthyes) in the Mediterranean Sea

The population biology and life strategies of Chlorophthalmus agassizii were studied in the Ionian Sea (eastern–central Mediterranean) using the data collected during the experimental trawl surveys carried out from 1995 to 2000. Depth-related trends of both density and size were found. With depth the former decreased while the latter increased. A typical bigger–deeper phenomenon was detected: young-of-the-year individuals occur on the shelf during autumn–winter months and move towards bathyal bottoms as they grow. The sampled population was made up of several size–age groups. The maximum age of 8 years was identified by means of otolith readings. The Von Bertalanffy growth parameters were estimated from the age–length key (L _∞=189.04±5.401 mm; k=0.24±0.021; t _o=−1.20±0.132; φ′=3.94) and modal progression analysis (L _∞=218.33±18.397 mm; k=0.164±0.028; t _o=−1.694±0.171; φ′=3.89). Reproduction of this monoecious fish was observed during summer–early autumn. Considering the female portion of the gonad, the size at attainment of 50% maturity was 115 mm TL. The corresponding age is within the third year of life. The simultaneous occurrence of oocytes in different development stages was shown in the ovary. Both the asynchronous ovary and oocyte size distribution indicate that C. agassizii spawns more than once during a reproductive season (batch spawner). Functional fecundity (on average 3,018 hydrated oocytes) was between 37 and 69% of the absolute fecundity and increased significantly with the individual size. Since adult specimens are mostly distributed on the slope, eggs and larvae develop in epipelagic waters and migrate in-shore where juvenile forms recruit on the shelf. Juveniles migrate ontogenetically towards deeper bottoms and after 2–3 years start to reproduce annually within a life span greater than 10 years.     

A test of reproductive skew models in a field population of a multiple-queen ant

Determining the evolutionary basis of variation in reproductive skew (degree of sharing of reproduction among coexisting individuals) is an important task both because skew varies widely across social taxa and because testing models of skew evolution permits tests of kin selection theory. Using parentage analyses based on microsatellite markers, we measured skew among female eggs (n=32.3 eggs per colony, range=20–68) in 17 polygynous colonies from a UK field population of the ant Leptothorax acervorum. We used skew among eggs as our principal measure of skew because of the high degree of queen turnover in the study population. Queens within colonies did not make significantly unequal contributions to queen and worker adult or pupal offspring, indicating that skew among female eggs reflected skew among daughter queens. On average, both skew among female eggs (measured by the B index) and queen–queen relatedness proved to be low (means±SE=0.06±0.02 and 0.28±0.08, respectively). However, contrary to current skew models, there was no significant association of skew with either relatedness or worker number (used as a measure of productivity). In L. acervorum, predictions of the concession model of skew may hold between but not within populations because queens are unable to assess their relatedness to other queens within colonies. Additional phenomena that may help maintain low skew in the study population include indiscriminate infanticide in the form of egg cannibalism and split sex ratios that penalize reproductive monopoly by single queens within polygynous colonies.