Evaluation of PCR-based quantification techniques to estimate the abundance of atrazine chlorohydrolase gene atzA in rhizosphere soils

There are many challenges in the accurate quantification of bacterial genes, such as the atrazine-degrading enzyme antA from Pseudomonas sp. strain ADP, from soil samples. We compared four quantitative methods for enumeration of atrazine-degrading bacteria in rhizosphere environments and utilized the optimal probe-based real-time polymerase chain reaction (PCR)-based method in an ongoing bioremediation experiment to monitor atzA copy number over time. We compared three quantitative PCR (qPCR) based methods--quantitative competitive PCR and two real-time qPCR methods--to traditional dilution-plate counting techniques. The optimal real-time qPCR assay was then used to monitor atzA copy number over time in the robust atrazine-degrading Pseudomonas sp. strain ADP-spiked rhizosphere environment. The use of sensitive and reliable probe-based real-time qPCRs for the enumeration of bacterial catabolic genes allows for their detection from soil samples and monitoring of potential degradative populations over time. The addition of arrazine-biodegrading bacteria into arrazine-contaminated sites to remove entrapped atrazine is a promising approach for mitigating atrazine pollution and its metabolites. The methodology contained herein will allow for optimal monitoring of atzA in rhizosphere soil with or without the addition of biodegradative Pseudomonas sp. strain ADP of bacteria.     

Phosphorus concentrations, loads, and sources within the Illinois River drainage area, northwest Arkansas, 1997-2008

In the Ozark Highlands and across the United States, effluent phosphorus (P) sources often have a profound impact on water column concentrations and riverine transport. This study evaluated (i) annual P loads at the Illinois River at Arkansas Highway 59 from calendar year 1997 through 2008, (ii) the relative contribution of effluent P sources to annual riverine P transport, (iii) longitudinal gradients in water column P concentrations downstream from several wastewater treatment plant effluent discharges, and (iv) changes in monthly P loads over the last decade. This study showed that annual P loads have ranged from 64,000 kg to over 426,000 kg and that P transport was positively correlated to hydrology (i.e., the amount of water delivered downstream). The relative contribution of P inputs from municipal facilities has decreased from 40% of the annual P load at the Illinois River at Arkansas Highway 59 to < 15% in recent years. Elevated P concentrations during base flow conditions were traced 45 river km upstream to one municipal effluent discharge, but all effluent discharges influenced P concentrations in the receiving streams. Most important, flow-adjusted monthly P loads showed two distinct trends over time. Flow-adjusted loads significantly increased from 1997 through 2002 and significantly decreased from 2002 through 2008. The concentrations and transport of P within the Illinois River drainage area are significantly decreasing from all the watershed management changes that have occurred, and monitoring should continue to determine if this decrease continues at the same rate over the next several years.     

Evaluation of Short-to-Medium Range Streamflow Forecasts Obtained Using an Enhanced Version of SRM1

Harshburger, Brian J., Karen S. Humes, Von P. Walden, Brandon C. Moore, Troy R. Blandford, and Albert Rango, 2010. Evaluation of Short-to-Medium Range Streamflow Forecasts Obtained Using an Enhanced Version of SRM. Journal of the American Water Resources Association (JAWRA) 46(3):603-617. DOI: 10.1111/j.1752-1688.2010.00437.x Abstract: As demand for water continues to escalate in the western United States, so does the need for accurate streamflow forecasts. Here, we describe a methodology for generating short-to-medium range (1 to 15 days) streamflow forecasts using an enhanced version of the Snowmelt Runoff Model (SRM), snow-covered area data derived from MODIS products, data from Snow Telemetry stations, and meteorological forecasts. The methodology was tested on three mid-elevation, snowmelt-dominated basins ranging in size from 1,600 to 3,500 km². To optimize the model performance and aid in its operational implementation, two enhancements have been made to SRM: (1) the use of an antecedent temperature index method to track snowpack cold content, and (2) the use of both maximum and minimum critical temperatures to partition precipitation into rain, snow, or a mixture of rain and snow. The comparison of retrospective model simulations with observed streamflow shows that the enhancements significantly improve the model performance. Streamflow forecasts generated using the enhanced version of the model compare well with the observed streamflow for the earlier leadtimes; forecast performance diminishes with leadtime due to errors in the meteorological forecasts. The three basins modeled in this research are typical of many mid-elevation basins throughout the American West, thus there is potential for this methodology to be applied successfully to other mountainous basins.     

Urban sprawl and air quality in large US cities

This study presents the results of a paper of urban spatial structure and exceedances of the 8-h national ambient air quality standard for ozone in 45 large US metropolitan regions. Through the integration of a published index of sprawl with metropolitan level data on annual ozone exceedances, precursor emissions, and regional climate over a 13-year period, the association between the extent of urban decentralization and the average number of ozone exceedances per year, while controlling for precursor emissions and temperature, is measured. The results of this analysis support the hypothesis that large metropolitan regions ranking highly on a quantitative index of sprawl experience a greater number of ozone exceedances than more spatially compact metropolitan regions. Importantly, this relationship was found to hold when controlling for population size, average ozone season temperatures, and regional emissions of nitrogen oxides and volatile organic compounds, suggesting that urban spatial structure may have effects on ozone formation that are independent of its effects on precursor emissions from transportation, industry, and power generation facilities.     

Experimental and modeling study of de novo formation of PCDD/PCDF on MSW fly ash

The effect of sulfur dioxide （SO2） on the formation of polychlorinated dibenzo-p-dioxins （PCDDs） and polychlorinated dibenzofurans （PCDFs） has been studied in an entrained-flow reactor （EFR） under simulated waste combustion conditions. A chlorination model based on conditional probability was employed to evaluate the homologue patterns of PCDDs and PCDFs. Results revealed that the presence of SO2 did not alter the formation pathway although SO2 suppressed PCDD/F formation. The prediction model of PCDF showed good agreement with the experimental data （R--0.95）, whereas the prediction for PCDDs did not correlate well with the experimental data. This may be explained because potential chlorination pathways play a significant role in PCDF formation, whereas PCDDs are mainly formed through condensation reactions. Furthermore, the result indicated that the steric hindrance during formation has more effects on PCDD than on PCDF due to the symmetric molecular structures of PCDDs.     

Long-Term Impacts of Land-Use Change on Non-Point Source Pollutant Loads for the St. Louis Metropolitan Area, USA

A land-use-change simulation model (LEAM) and a non-point-source (NPS) water quality model (L-THIA) were closely coupled as LEAMwq in order to determine the long-term implications of various degree of urbanization on NPS total nitrogen (TN), total suspended particles (TSP), and total phosphorus (TP) loads. A future land-use projection in the St. Louis metropolitan area from 2005 to 2030 using three economic growth scenarios (base, low, and high) and a long-term precipitation dataset were used to predict the mean annual surface runoff and mean annual NPS pollutant loads in the region. Results show mean annual TN increases of 0.21%, 0.13%, and 0.14% by 2030 compared to 2000 under the base, high, and low scenarios, respectively. TSP and TP showed similar trends with different magnitudes. Corresponding changes in annual mean surface runoff were shown to be lower than expected, which might be attributed to the small-scale conversion pattern of land uses. In the most dramatic change (high growth) scenario, the runoff would increase across time but at varying rates, and temporal pollutant loads would result in a more complicated pattern than in the other scenarios. This is attributed to the complex interactions between event mean concentrations of pollutants and the magnitude of changes in land-use acreages. By integrating L-THIA with LEAM, LEAMwq was found to be a useful planning tool to illustrate in a quick and simple manner how future water quality is connected to decision-making on future land-use change.     

A passive air sampler for characterizing the vertical concentration profile of gaseous phase polycyclic aromatic hydrocarbons in near soil surface air

Air-soil exchange is an important process governing the fate of polycyclic aromatic hydrocarbons (PAHs). A novel passive air sampler was designed and tested for measuring the vertical concentration profile of 4 low molecular weight PAHs in gaseous phase (PAH_LMW4) in near soil surface air. Air at various heights from 5 to 520 mm above the ground was sampled by polyurethane foam disks held in down-faced cartridges. The samplers were tested at three sites: A: an extremely contaminated site, B: a site near A, and C: a background site on a university campus. Vertical concentration gradients were revealed for PAH_LMW4 within a thin layer close to soil surface at the three sites. PAH concentrations either decreased (Site A) or increased (Sites B and C) with height, suggesting either deposition to or evaporation from soils. The sampler is a useful tool for investigating air-soil exchange of gaseous phase semi-volatile organic chemicals.     

A Method for Assessing Hydrologic Alteration within Ecosystems

Hydrologic regimes play a major role in determining the biotic composition, structure, and function of aquatic, wetland, and riparian ecosystems. But human land and water uses are substantially altering hydrologic regimes around the world. Improved quantitative evaluations of human-induced hydrologic changes are needed to advance research on the biotic implications of hydrologic alteration and to support ecosystem management and restoration plans. We propose a method for assessing the degree of hydrologic alteration attributable to human influence within an ecosystem. This method, referred to as the "Indicators of Hydrologic Alteration," is based upon an analysis of hydrologic data available either from existing measurement points within an ecosystem (such as at stream gauges or wells) or model-generated data. We use 32 parameters, organized into five groups, to statistically characterize hydrologic variation within each year. These 32 parameters provide information on ecologically significant features of surface and ground water regimes influencing aquatic, wetland, and riparian ecosystems. We then assess the hydrologic perturbations associated with activities such as dam operations, flow diversion, groundwater pumping, or intensive land-use conversion by comparing measures of central tendency and dispersion for each parameter between user-defined "pre-impact" and "post-impact" time frames, generating 64 Indicators of Hydrologic Alteration. This method is intended for use with other ecosystem metrics in inventories of ecosystem integrity, in planning ecosystem management activities, and in setting and measuring progress toward conservation or restoration goals.     

Role of organic acids in enhancing the desorption and uptake of weathered p,p'-DDE by Cucurbita pepo

Experiments were conducted to assess the effect of seven organic acids [succinic, tartaric, malic, malonic, oxalic, citric, ethylene-diaminetetraacetic (EDTA)] over a concentration range of two orders of magnitude (0.001-0.10 M) on the abiotic desorption of weathered p,p'-DDE and the extraction of polyvalent inorganic ions from soil. At 0.05 M all organic acids significantly increased contaminant desorption by 19-80%. Organic acids also increased the aqueous concentration of eight inorganic constituents extracted from soil, with at least a six-fold increase in the release of Al, Fe, Mn, and P at 0.001 M. Zucchini seedlings grown for 28 d in soil containing weathered p,p'-DDE (300 ng/g, dry weight) were periodically amended with distilled water, citric or oxalic acids (0.01 M). Plants receiving water removed 1.7% of the p,p'-DDE from the soil. Seedlings amended with citric or oxalic acids removed 2.1 and 1.9% of the contaminant, respectively, and contained up to 66% more contaminant in the shoot system than unamended vegetation. A second crop of untreated (distilled water) zucchini in the same soil removed more contaminant than the first crop (2.5%), although the addition of organic acids did not further enhance contaminant uptake. The data indicate that the addition of low molecular weight organic acids causes the partial dissolution of the soil structure through the chelation of inorganic structural ions, potentially enhancing bioavailability and having implications for the phytoremediation of persistent organic pollutants in soil.