An evaluation of the applicability of microarrays for monitoring toxic algae in Irish coastal waters

The applicability of microarrays to monitor harmful algae across a broad range of ecological niches and toxic species responsible for harmful algal events has been one of the key tasks in the EU Seventh Framework Programme (FP7)-funded Microarrays for the Detection of Toxic Algae project. The technique has a strong potential for improving speed and accuracy of the identification of harmful algae and their toxins to assist monitoring programmes. Water samples were collected from a number of coastal sites around Ireland, including several that are used in the Irish National Phytoplankton and Biotoxin Monitoring Programme. Ribosomal RNA was extracted from filtered field samples, labelled with a fluorescent dye, and hybridised to probes spotted in a microarray format on a glass slide. The fluorescent signal intensity of the hybridisation to >120 probes on the chip was analysed and compared with actual field counts. There was a general agreement between cell counts and microarray signal. Results are presented for field samples taken from a range of stations along the Irish coastline known for harmful algal events during the first field trial (July 2009–April 2010).     

Cadmium adsorption by willow root: the role of cell walls and their subfractions

Plant cell walls may play an important role in the uptake and accumulation of heavy metals. This study was undertaken to obtain a better understanding of the role of the root cell walls (RCW) and their subfractions on adsorption of cadmium (Cd) in a promising woody phytoremediation species, Salix jiangsuensis J172. In order to examine how Cd binding was affected by pectin and hemicellulose, RCW were isolated and sequentially fractioned by removing pectin (RCW1), partial removal of hemicellulose (RCW2), and complete removal of hemicellulose (RCW3). The RCW and fractions were characterized by Fourier transform infrared spectroscopy, which suggested decomposition of hemicellulose and a decline in nitrogen content following cell wall isolation and fractionation. The adsorption affinity of Cd increased gradually following the sequential extraction of root cells, suggesting that hemicellulose negatively impacted Cd adsorption, while pectin and cellulose enhanced Cd adsorption. Cd adsorption dynamics and isotherms could be best described by the pseudo-second-order (R?>?0.99) and Freundlich (R?>?0.97) models, respectively. Thermodynamic properties (?G, ?H, and ?S), determined using the van’t Hoff equation, indicated that while Cd adsorption was endothermic, and spontaneous for RCW2 and RCW3, adsorption was not spontaneous for the root, RCW, and RCW1. The results provide evidence for the importance of the root cell walls in the adsorption of Cd by willow roots.     

Identification of fungal proteases potentially suitable for environmentally friendly cleaning-in-place in the dairy industry

Fourteen fungi were screened for ability to produce proteases with activity on milk protein. The proteases produced were assessed on a lab-scale in terms of their potential suitability for cleaning-in-place (CIP) in the dairy industry. Cleaning performance was assessed by determining the ability of the enzymes to remove an industrial-like milk fouling deposit from stainless steel. Based on the results observed, the extracellular protease activity produced by Schizophyllum commune was selected as most suitable for potential CIP application. A CIP procedure involving a sodium carbonate rinse followed by enzymatic cleaning with this fungal enzyme activity was developed. Satisfactory cleaning, judged by quantification of residual organic matter and protein on the stainless steel surface after cleaning, was achieved using the developed CIP procedure at 40 °C. This CIP procedure, based on biodegradable enzymes working at low temperature is more environmentally favourable than conventional CIP methods using caustic based cleaning solutions at 70-80 °C. Potential environmental benefits of the developed enzymatic CIP procedure include reduced energy consumption, decreased chemical usage and a reduced requirement for pH neutralisation of the resultant waste prior to release.     

EMAP Design and River Reach File 3 (RF3) as a Sample Frame in the Central Valley, California

The Central Valley, California, R-EMAP project assessed the effects of highly modified, agriculturally dominated landuse on the aquatic resources of the lower portion of the Central Valley watersheds. The focus of this paper is to assess the utility of the EMAP design and the River Reach File version 3 (RF3) 1:100,000 scale Digital Line Graph (DLG) as a sampling frame. The study area is 34,099 mi²(88,316 km²) and comprises the lower reaches of the Sacramento River and San Joaquin River watersheds to the 1000 ft. (305 m) elevation. Sampling sites are selected using a tessellation stratified design to represent the two main populations of interest: natural streams and man-made waterways. Sites are selected to represent 13,226 miles of streams and sloughs, and 14,648 miles of irrigation canals, ditches and drains. To achieve an approximately equal sample size across stream orders and basins, the sample design was weighted by Strahler order categories to ensure sampling occurred in the higher order streams. Based on office and field reconnaissance, the study provided information on the quality of RF3 as a sampling frame. Site selection using RF3 had a success rate of approximately 44%. The RF3 database has an error rate of approximately 7%. When human influence factors were included, the error rate increased to 16%. There was an 11% error rate when selecting sites for natural streams, and approximately a 14% error rate for man-made waterways. The reconnaissance information indicated that presence or absence of irrigation ditches and return drains depends on changing agricultural uses. Some of the error in the RF3 for natural streams and man-made waterways can be attributed to rapid urban expansion, especially in the San Joaquin basin.     

Constructing “not Implausible” Climate and Economic Scenarios for Egypt

A space of “not-implausible” scenarios for Egypt's future under climate change is defined along two dimensions. One depicts representative climate change and climate variability scenarios that span the realm of possibility. Some would not be very threatening. Others portend dramatic reductions in average flows into Lake Nassar and associated increases in the likelihood of year to year shortfalls below critical coping thresholds; these would be extremely troublesome, especially if they were cast in the context of increased political instability across the entire Nile Basin. Still others depict futures along which relatively routine and relatively inexpensive adaptation might be anticipated. The ability to adapt to change and to cope with more severe extremes would, however, be linked inexorably to the second set of social–political–economic scenarios. The second dimension, defined as “anthropogenic” social/economic/political scenarios describe the holistic environment within which the determinants of adaptive capacity for water management, agriculture, and coastal zone management must be assessed. This revised version was published online in July 2006 with corrections to the Cover Date.     

Assessing multiple novel tracers to improve the understanding of the contribution of agricultural farm waste to diffuse water pollution

A study was undertaken on drained and undrained 1 ha grassland lysimeters to assess the effectiveness of multiple novel tracing techniques in understanding how agricultural slurry waste moves from land to water. Artificial fluorescent particles designed to mimic the size and density of organic slurry particles were found to move off the grassland via inter-flow (surface + lateral through-flow) and drain-flow. Where both pathways were present the drains carried the greater number of particles. The results of the natural fluorescence and δ13C of water samples were inconclusive. Natural fluorescence was higher from slurry-amended lysimeters than from zero-slurry lysimeters, however, a fluorescence decay experiment suggested that no slurry signal should be present given the time between slurry application and the onset of drainage. The δ13C values of >0.7 microm and <0.7 microm material in drainage were varied and unrelated to discharge. The mean value of >0.7 microm δ13C in water from the drain-flow pathways was higher from the lysimeter which had received naturally enriched maize slurry compared to the lysimeter which received grass slurry indicating a contribution of slurry-derived material. Values of <0.7 microm δ13C from the same pathway, however, produced counter intuitive trends and may indicate that different fractions of the slurry have different δ13C values.     

Using Geographically Isolated Loading Scenarios to Analyze Nitrogen and Phosphorus Exchanges and Explore Tailored Nutrient Control Strategies for Efficient Management

A set of geographically isolated differential nitrogen (N) and phosphorus (P) load model scenarios from major Chesapeake basins provides information on the relative impact of nutrient loads on primary production and dissolved oxygen in the Chesapeake Bay. Model results show the relationships of deep water dissolved oxygen with nutrient limitation-related algal blooms, organic carbon loads from the watershed, estuarine circulation, nutrient cycling, and nutrient diagenesis. The combined effect of changes in load from multiple basins is additive for changes in both chlorophyll-a and deep water dissolved oxygen concentrations. Management of both N and P are required in the Chesapeake watershed and tidal waters to achieve water quality standards, but overall efficiencies could be gained with strategies that place greater emphasis on P control in the upper Bay and greater emphasis on N control in the lower Bay. The areas of the Bay with the highest degree of dissolved oxygen degradation that generally drive management decisions are mostly P-limited and are significantly influenced by the load from the upper Bay’s basins. Reducing P from the upper Bay’s basins will intensify P limitation and would allow an increase in N of about six times the weight of P reduction. Combining the relative nutrient reduction effectiveness with the relative control cost information could improve management efficiency and provide benefits at a lower cost. This article describes initial steps that can be taken to examine the benefits from N-P exchanges.     

Bioenergy Sustainability in China: Potential and Impacts

The sustainability implications of bioenergy development strategies are large and complex. Unlike conventional agriculture, bioenergy production provides an opportunity to design systems for improving eco-environmental services. Different places have different goals and solutions for bioenergy development, but they all should adhere to the sustainability requirements of the environment, economy, and society. This article serves as a brief overview of China’s bioenergy development and as an introduction to this special issue on the impacts of bioenergy development in China. The eleven articles in this special issue present a range of perspectives and scenario analyses on bioenergy production and its impacts as well as potential barriers to its development. Five general themes are covered: status and goals, biomass resources, energy plants, environmental impacts, and economic and social impacts. The potential for bioenergy production in China is huge, particularly in the central north and northwest. China plans to develop a bioenergy capacity of 30GW by 2020. However, realization of this goal will require breakthroughs in bioenergy landscape design, energy plant biotechnology, legislation, incentive policy, and conversion facilities. Our analyses suggest that (1) the linkage between bioenergy, environment, and economy are often circular rather than linear in nature; (2) sustainability is a core concept in bioenergy design and the ultimate goal of bioenergy development; and (3) each bioenergy development scheme must be region-specific and designed to solve local environmental and agricultural problems.     

Observations on the methane oxidation capacity of landfill soils

The objective of this study was to determine the role of CH₄ loading to a landfill cover in the control of CH₄ oxidation rate (g CH₄ m⁻² d⁻¹) and CH₄ oxidation efficiency (% CH₄ oxidation) in a field setting. Specifically, we wanted to assess how much CH₄ a cover soil could handle. To achieve this objective we conducted synoptic measurements of landfill CH₄ emission and CH₄ oxidation in a single season at two Southeastern USA landfills. We hypothesized that percent oxidation would be greatest at sites of low CH₄ emission and would decrease as CH₄ emission rates increased. The trends in the experimental results were then compared to the predictions of two differing numerical models designed to simulate gas transport in landfill covers, one by modeling transport by diffusion only and the second allowing both advection and diffusion. In both field measurements and in modeling, we found that percent oxidation is a decreasing exponential function of the total CH₄ flux rate (CH₄ loading) into the cover. When CH₄ is supplied, a cover’s rate of CH₄ uptake (g CH₄ m⁻² d⁻²) is linear to a point, after which the system becomes saturated. Both field data and modeling results indicate that percent oxidation should not be considered as a constant value. Percent oxidation is a changing quantity and is a function of cover type, climatic conditions and CH₄ loading to the bottom of the cover. The data indicate that an effective way to increase the % oxidation of a landfill cover is to limit the amount of CH₄ delivered to it.     

Methane emissions from 20 landfills across the United States using vertical radial plume mapping

Landfill fugitive methane emissions were quantified as a function of climate type and cover type at 20 landfills using US. Environmental Protection Agency (EPA) Other Test Method (OTM)-10 vertical radial plume mapping (VRPM) with tunable diode lasers (TDLs). The VRPM data were initially collected as g CH4/sec emission rates and subsequently converted to g CH4/m2/ day rates using two recently published approaches. The first was based upon field tracer releases of methane or acetylene and multiple linear regression analysis (MLRM). The second was a virtual computer model that was based upon the Industrial Source Complex (ISC3) and Pasquill plume stability class models (PSCMs). Calculated emission results in g CH4/m2/day for each measured VRPM with the two approaches agreed well (r2 = 0.93). The VRPM data were obtained from the working face, temporary soil, intermediate soil, and final soil or synthetic covers. The data show that methane emissions to the atmosphere are a function of climate and cover type. Humid subtropical climates exhibited the highest emissions for all cover types at 207, 127, 102, and 32 g CH4/m2/day, for working face (no cover), temporary, intermediate, and final cover, respectively. Humid continental warm summers showed 67, 51, and 27 g CH4/m2/day for temporary, intermediate, and final covers. Humid continental cool summers were 135, 40, and 26 g CH4/m2/day for the working face, intermediate, and final covers. Mediterranean climates were examined for intermediate and final covers only and found to be 11 and 6 g CH4/m2/day, respectively, whereas semiarid climates showed 85, 11, 3.7, and 2.7 g CH4/m2/day for working face, temporary, intermediate, and final covers. A closed, synthetically capped landfill covered with soil and vegetation with a gas collection system in a humid continental warm summer climate gave mostly background methane readings and average emission rates of only 0.09 g CH4/m2/day flux when measurable.