The effects of perennial ryegrass and alfalfa on microbial abundance and diversity in petroleum contaminated soil

Enhanced rhizosphere degradation uses plants to stimulate the rhizosphere microbial community to degrade organic contaminants. We measured changes in microbial communities caused by the addition of two species of plants in a soil contaminated with 31,000 ppm of total petroleum hydrocarbons. Perennial ryegrass and/or alfalfa increased the number of rhizosphere bacteria in the hydrocarbon-contaminated soil. These plants also increased the number of bacteria capable of petroleum degradation as estimated by the most probable number (MPN) method. Eco-Biolog plates did not detect changes in metabolic diversity between bulk and rhizosphere samples but denaturing gradient gel electrophoresis (DGGE) analysis of PCR-amplified partial 16S rDNA sequences indicated a shift in the bacterial community in the rhizosphere samples. Dice coefficient matrices derived from DGGE profiles showed similarities between the rhizospheres of alfalfa and perennial ryegrass/alfalfa mixture in the contaminated soil at week seven. Perennial ryegrass and perennial ryegrass/alfalfa mixture caused the greatest change in the rhizosphere bacterial community as determined by DGGE analysis. We concluded that plants altered the microbial population; these changes were plant-specific and could contribute to degradation of petroleum hydrocarbons in contaminated soil.     

Comparison of spontaneous antibiotic resistance frequency of Salmonella Typhimurium growth in glucose amended continuous culture at slow and fast dilution rates

The objective of the study was to determine the frequency of spontaneous acquisition of resistance to select antibiotics by Salmonella Typhimurium (ST) when grown in glucose amended continuous flow culture at slow (D = 0.025 h(-1)) or fast (D = 0.27 h(-1)) dilution rates. The bacterium was grown in LB minimal medium (pH 6.25) containing no antibiotics. Upon achieving steady state, samples were plated to tryptic soy agar (TSA) alone or supplemented (per ml) with 2 and 16 microg oxytetracycline, 4 and 16 microg tetracycline, 2 and 64 microg kanamycin, and 0.25 and 2 microg enrofloxacin. Regardless of growth rate, CFU of resistant ST from the TSA containing antibiotics was less than 2 x 10(1) except for 2 microg kanamycin and 0.25 microg enrofloxacin treatments (higher than 1 x 10(9) and 4 x 10(7) CFU of resistant ST for trials 1 and 2, respectively). Frequency of recovering resistant ST from the TSA containing the higher antibiotic concentrations was less than 1 in 10(9) for all antibiotics, but was higher on the media containing 2 microg kanamycin and 0.25 microg enrofloxacin at both slow and fast growth rates. In general, minimal susceptibility differences were detected for isolates from slow and fast dilution rates.     

Genetic Patterns as a Tool for Monitoring and Assessment of Environmental Impacts: the Example of Genetic Ecotoxicology

Genetic techniques are widely applied to assess the effects of environmental variation or exogenous impacts on populations. Many studies fail to provide convincing evidence that genetic patterns are attributable to the factors proposed. We assert that a rigorous approach must be followed to distinguish patterns of natural genetic variation from genetic change. We review the principles of natural genetic variation and population structure and present them in the context of their interaction with biological and stochastic sources of genetic change. Key steps are articulated which are often overlooked when applying genetic techniques. These are consideration of population structure when comparing populations, developing a specific test against a model of genetic change, and testing for evidence of direct effects and mechanisms of impact. Use of these steps in genetic ecotoxicology is described in detail and includes three primary methods of linking genetic patterns to the effects of contaminants. We propose that this combined approach is critical to the use of genetic techniques to assess and predict long-term effects of environmental impacts on populations or ecosystems.     

RESEARCH: Comparison of Temporal Trends in Ambient and Compliance Trace Element and PCB Data in Pool 2 of the Mississippi River, USA, 1985–1995

6+ ), copper (Cu), lead (Pb), mercury (Hg), nickel (Ni), selenium (Se), zinc (Zn), and polychlorinated biphenyls (PCBs). Water-column, bed-sediment, and fish-tissue (fillets) data collected by five government agencies comprised the ambient data set; effluent data from five registered facilities comprised the compliance data set. The nonparametric Mann-Kendall trend test indicated that 33% of temporal trends in all data were statistically significant (P < 0.05). Possible reasons for this were low sample sizes, and a high percentage of samples below the analytical detection limit. Trends in compliance data were more distinct; most trace elements decreased significantly, probably due to improvements in wastewater treatment. Seven trace elements (Cr, Cd, Cu, Pb, Hg, Ni, and Zn) had statistically significant decreases in wastewater and portions of either or both ambient water and bed sediment. No trends were found in fish tissue. Inconsistency in trends between ambient and compliance data were often found for individual constituents, making overall similarity between the data sets difficult to determine. Logistical differences in monitoring programs, such as varying field and laboratory methods among agencies, made it difficult to assess ambient temporal trends.     

Copulation duration,but not paternity share,potentially mediates inbreeding avoidance in Drosophila montana

Studying the incidence of inbreeding avoidance is important for understanding the evolution of mating systems, especially in the context of mate choice for genetic compatibility. We investigated whether inbreeding avoidance mechanisms have evolved in the malt fly, Drosophila montana, by measuring mating latency (a measure of male attractiveness), copulation duration, days to remating, offspring production, and the proportion of offspring sired by the first (P₁) and second (P₂) male to mate in full-sibling and unrelated pairs. SNP markers were used for paternity analysis and for calculating pairwise relatedness values (genotype sharing) between mating pairs. We found 18 % inbreeding depression in egg-to-adult viability, suggesting that mating with close relatives is costly. Copulation duration was shorter between previously mated females and their brothers than with unrelated males. Based on an earlier study, shorter copulation is likely to decrease the number of inbred progeny by decreasing female remating time. However, shorter copulations did not lead to lower paternity (P₂) of full-sibling males. Progeny production of double-mated females was lower when the second male was a full-sibling as compared to an unrelated male, but we could not distinguish between inbreeding depression and lower female reproductive effort after mating with a relative. Relatedness estimates based on 34 SNPs did not detect any quantitative effect of relatedness variation on copulation duration and progeny production. We suggest that inbreeding depression has been strong enough to select for inbreeding avoidance mechanisms in our Finnish D. montana population.     

Male response to an aggressive visual signal, the wing wave display, in swamp sparrows

Signaling often involves complex suites of behaviors that incorporate different sensory modalities. Whatever modality is used to establish that a signal functions in communication researchers must demonstrate that receivers respond to it. The territory defense response of male swamp sparrows involves a variety of behaviors that includes both vocal and visual displays. One of these, the “wing wave” display, is a distinctive movement that predicts physical attack. Here, we use robotic taxidermic mounts paired with song to test the hypothesis that wing waving is a signal and, specifically, that male receivers respond to wing waving as a signal of aggressive intent. As predicted, subjects responded more aggressively to the mount during wing waving trials than during stationary trials. A second experiment demonstrated that this effect cannot be attributed simply to increased attention to movement. Less expectedly, subjects did not alter their own display behavior in response to wing waving as compared to a static mount. We conclude that the wing wave display in the context of singing is a signal that functions in male–male aggressive communication. Questions remain, including whether wing waving functions as a signal in the absence of singing and whether wing waving and song are redundant signals or communicate different information.     

European starling nestling response to chlorpyrifos exposure in a corn agroecosystem

European starling (Sturnus vulgaris) nestlings were used as a surrogate to study the effect of chlorpyrifos application to a corn agroecosystem on songbird reproduction. Chlorpyrifos was applied in a T‐band at 1.3 kg AI/ha, and residues were measured in soil, earthworms, ground‐dwelling insects, and diet items collected from the crop of starling nestlings. Chlorpyrifos levels in soil peaked at 34.2 μg/g, 4 days post‐application, and dissipated to trace levels by 64 days post‐application. Concentrations of chlorpyrifos in earthworms and ground‐dwelling insects reached 0.9 and 0.7 ug/g, respectively. Starling nestling diet items included invertebrates from eight orders with chlorpyrifos concentrations ranging from trace levels to 10.6 μg/g in earthworms. Nestling brain and plasma cholinesterase (ChE) activity and body mass measurements were taken at 3, 8, and 13 days post‐hatch (DPH). Adult starling fecundity was also measured. Body mass differences between treatment and reference site nestlings at 3 and 13 DPH were not significant at α = 0.05. However, 8 DPH nestlings from the Treatment Site had a transient reduction in weight (p = 0.03) when compared with 8 DPH reference nestlings. There were no significant differences in brain or plasma ChE activities of 3, 8, or 13 DPH nestlings. Further, multiple measures of fecundity (i.e., clutch size, hatching percentage, and fledging percentage) indicated that chlorpyrifos application did not affect starling nestling survival to fledging, as the values from the Treatment and Reference Site were nearly identical. This screening‐level study suggests that although one age group of starling nestlings from the Treatment Site weighed less than their Reference Site counterparts, a single T‐band application of chlorpyrifos did not impair starling nesting success.     

Passive scalar roughness lengths for atmospheric boundary layer flow over complex, fractal topographies

When modeling atmospheric boundary layer flow over rough landscapes, surface fluxes of flow quantities (momentum, temperature, etc.) can be described with equilibrium logarithmic law expressions, all of which require specification of a roughness length that is, physically, the elevation at which the flow quantity equals its surface value. In high Reynolds number flows, such as the atmospheric boundary layer, inertial forces associated with turbulent eddy motions are responsible for surface momentum fluxes (form, or pressure drag). Surface scalar fluxes, on the other hand, occur exclusively via diffusion in the immediate vicinity of the topography—the interfacial region—before being advected by turbulent eddy motions into the bulk of the flow. Owing to this difference in surface transfer mechanism, the passive scalar roughness length, $z_{0S}$ , is known to be less than the momentum roughness length, $z_0$ . In this work, classical relations are used to specify $z_{0S}$ during large-eddy simulation of atmospheric boundary layer flow over aerodynamically rough, synthetic, fractal topographies which exhibit power-law height energy spectrum, $E_h (k) \sim k^{\beta _s}$ , where $\beta _s$ is a (predefined) spectral exponent. These topographies are convenient since they resemble natural landscapes and $\beta _s$ can be varied to change the topography’s aerodynamic roughness (the study considers a suite of topographies with $-2.4 \le \beta _s \le -1.2$ , where $-2.4$ and $-1.2$ are the “most smooth” and “most rough” cases, respectively, corresponding with roughness Reynolds number, $Re_0 \approx 10$ and $300$ ). It is often assumed that $z_{0S}/z_{0} \approx 10^{-1}$ for all $Re_0$ . But results from this work show that the roughness length ratio, $z_{0S}/z_{0}$ , depends strongly on $Re_0$ , ranging between $10^{-3}$ and $10^{-1}$ .