Soil frost control: agricultural adaptation to climate variability in a cold region of Japan

In the northernmost region of Japan (Hokkaido Island), earlier onsets of thick snowcover in recent years (post 1980) have reduced the penetration depth of soil frost, resulting in over-winter survival of unharvested small potato (Solanum tuberosum) tubers that emerge as weeds in the spring in rotation crop fields. To prevent the occurrence of potato weeds, a method was developed to manipulate soil-frost depths by artificially controlling snowcover thickness, guided by a simple numerical model that simulates soil freezing-thawing processes using daily mean air temperature and snowcover thinckness as input variables. The method involves removal of snowcover to expose the soil surface in the beginning of winter until the soil freezes to a sufficient depth. After that time, snow is deposited back or allowed to accumulate naturally to prevent further penetration of frost, which may cause undesirable delay in the seeding of spring crops. Field trials indicated that the model predicted frost depths within several centimeters of observed values, when measured temperature and snowcover thickness were used as model input. Based on the field and laboratory data, a soil temperature of −3°C is necessary for complete elimination of potato tubers. To achieve this temperature in potato-burial zones without causing excessive freezing, an optimal frost depth is 0.3 to 0.4 m. The method is being adopted by progressive potato producers in the region, who use tractor-mounted snow ploughs to manipulate snowcover over a large scale. This is an emerging new technology for agricultural adaptation to climate variability.     

Relationship between the growth and survival of larval Pacific bluefin tuna, Thunnus orientalis

We tested the hypothesis that a large body size and rapid growth rate affect the survival of larval Pacific bluefin tuna, Thunnus orientalis (PBT), and analyzed larval growth in relation to environmental conditions. Seven high density larval patches of PBT were tracked with reference buoys in the northwestern Pacific Ocean for 28–171 h in May–June from 2004 to 2008. The otolith radii and daily growth rates of the survivor larvae (collected on later tracking days of each tracking session) tended to be larger and more rapid, respectively, than those of original larvae (collected on earlier tracking days). A large body size was found to positively affect the survival of larval PBT, as did a rapid growth rate, even at an early larval stage (7 days after hatching). Generalized linear modeling showed that the otolith radius was influenced positively by the sea temperature, stratification parameter and food density, while the growth rate was influenced positively by the sea temperature and food density.     

Comparative analysis on the genetic population structures of the deep-sea whelks <Emphasis Type="Italic">Buccinum tsubai</Emphasis> and <Emphasis Type="Italic">Neptunea constricta</Emphasis> in the Sea of Japan

The population structures of Buccinum tsubai and Neptunea constricta were compared using partial sequences of the mitochondrial COI gene. B. tsubai included four genetically distinguishable subpopulations (Hokkaido, Yamagata-Toyama, Yamato Bank, and San’in), which is consistent with the results of our previous study using mitochondrial 16SrRNA sequences. The genetic structure of N. constricta was also clear, but the lineage sorting corresponding to the geographical distribution was not as clear as that of B. tsubai. The difference between the genetic structures of these two species might be due to a difference in either their dispersal abilities or the historic distribution patterns in the Sea of Japan. The fossil record and nested clade analyses support the latter alternative. The four subpopulations of B. tsubai are estimated to have diverged 0.42–1.46 million years ago, providing support for the existence of intermediate water of normal salinity and oxygen concentration capable of sustaining B. tsubai between the low-salinity surface water and anoxic deep water during the Pleistocene glacial periods. The genetic diversity of the Yamato Bank subpopulation of B. tsubai was lower than that of the other subpopulations, which is likely attributable to the small size of the Yamato Bank subpopulation.     

A Bayesian approach to probabilistic ecological risk assessment: risk comparison of nine toxic substances in Tokyo surface waters

Background, aim, and scope  

Quantitative risk comparison of toxic substances is necessary to decide which substances should be prioritized to achieve effective risk management. This study compared the ecological risk among nine major toxic substances (ammonia, bisphenol-A, chloroform, copper, hexavalent chromium, lead, manganese, nickel, and zinc) in Tokyo surface waters by adopting an integrated risk analysis procedure using Bayesian statistics.     

Alternative mating strategies in the water strider Gerris elongatus (Heteroptera,Gerridae)

Summary Males of the water strider Gerris elongatus established territories which included copulation and oviposition sites (small pieces of fallen bamboo). Males were aggressive and competition for territory and females was observed frequently. Male midlegs were more developed than female midlegs and were used as weapons. Reproductive behaviour changed as the breeding season advanced. Early in the season immature females were attracted by male surface wave courtship signals, then copulated white floating on the water surface without ovipositing (type 1). In midseason, males established territories, produced calling signals and attracted females which copulated and oviposited there with male postcopulatory guarding (type 2). In late season, many females oviposited without postcopulatory guarding on pondweed mats near fallen bamboo. Non-territorial males waiter for the arrival of these females and copulated without courtship, but mating success was low (type 3). These alternative mating strategies appeared to depend on differences in male size. Larger males were superior to smaller males in many ways (establishing territory, fighting, mating etc.). The largest males defended territories and had higher mating success than small non-territorial males. Medium sized males used all three strategies according to the number of empty territories and seasonal femald distribution.     

Effects of parabens on apoptosis induced by serum-free medium

Alkyl esters of p-hydroxybenzoic acids (parabens), an endocrine disrupter, are used as preservatives in cosmetics and foods. In this study, to understand the relationship between parabens and differentiation in infants, the effects of parabens on apoptosis induced by serum deprivation in PC12 cells were investigated. In addition, apoptosis-related factors were assayed. As results, a tendency toward enhancement of apoptosis was observed in the cells cultured in the serum-free medium with methylparaben, and this tendency was suggested to be related to the contents of BAD, a pro-apoptotic protein. Butylparaben did not show any tendency to enhance apoptosis.     

Three-dimensional diffusion of non-sorbing species in porous sandstone: computer simulation based on X-ray microtomography using synchrotron radiation

The diffusion pathways of porous sandstone were examined by a three-dimensional (3-D) imaging technique based on X-ray computed tomography (CT) using the SPring-8 (Super Photon ring-8 GeV, Hyogo, Japan) synchrotron radiation facility. The analysis was undertaken to develop better understanding of the diffusion pathways in natural rock as a key factor in clarifying the detailed mechanism of the diffusion of radionuclides and water molecules through the pore spaces of natural barriers in underground nuclear waste disposal facilities. A cylindrical sample (diameter 4 mm, length 6 mm) of sandstone (porosity 0.14) was imaged to obtain a 3-D image set of 450(3) voxels=2.62(3) mm(3). Through cluster-labeling analysis of the 3-D image set, it was revealed that 89% of the pore space forms a single large pore-cluster responsible for macroscopic diffusive transport, while only 11% of the pore space is made up of isolated pores that are not involved in long-range diffusive transport. Computer simulations of the 3-D diffusion of non-sorbing random walkers in the largest pore cluster were performed to calculate the surface-to-volume ratio of the pore, tortuosity (diffusion coefficient in free space divided by that in porous rock). The results showed that (i) the simulated surface-to-volume ratio is about 60% of the results obtained by conventional pulsed-field-gradient proton nuclear magnetic resonance (NMR) laboratory experiments and (ii) the simulated tortuosity is five to seven times larger than the results of laboratory diffusion experiments using non-sorbing I(-) and Br(-). These discrepancies are probably attributed to the intrinsic sample heterogeneity and limited spatial resolution of the CT system. The permeability was also estimated based on the NMR diffusometry theory using the results of the random walk simulations via the Kozeny-Carman equation. The estimated permeability involved an error of about 20% compared with the permeability measured by the conventional method, suggesting that the diffusometry-based NMR well logging with gradient coils is applicable to the in-situ permeability measurement of strata. The present study demonstrated that X-ray CT using synchrotron radiation is a powerful tool for obtaining 3-D pore structure images without the beam-hardening artifacts inevitable in conventional CT using X-ray tubes.