Continuous-time capture-recapture population estimation when capture probabilities vary over time

Closed capture-recapture (CR) estimators have been used extensively to estimate population size. Most closed CR approaches have been developed and evaluated for discrete-time models, but there has been little effort to evaluate their continuous-time counterparts. Continuous-time estimators — developed using maximum likelihood theory by Craig (1953) and Darroch (1958), and martingale theory by Becker (1984) — that allow capture probabilities to vary over time were evaluated using Monte Carlo simulation. Overall, the ML estimators had a smaller MSE. The estimators performed well when model assumptions were upheld, and were somewhat robust to heterogeneity in capture probabilities. However, the estimators were not robust to behavioural effects in the capture probabilities. Time lag effects (periods when animals might be unavailable for immediate recapture) on continuous-time estimates were also investigated and results indicated a positive bias which was greater for smaller populations. There was no gain in performance when using a continuous-time estimator versus a discrete-time estimator on the same simulated data. Usefulness of the continuous-time approach may be limited to study designs where animals are easier to sample using continuous-time methodology.     

Intracellular digestion in two sublittoral populations of Ostrea edulis (Lamellibranchia)

The rhythmicity of intracellular digestion was examined in two sublittoral populations of Ostrea edulis L. On the West coast of Ireland. During 12 h cycles at each station, 20 oysters were collected each hour, grouped as sub-samples of 5, facing each of the 4 cardinal points of the compass. A segment of digestive diverticula from each oyster was examined histologically and classified according to the digestive phases of the tubules. Oysters at both stations exhibited fluctuations in digestive activity which were not correlated with tidal ebb and flow nor with orientation to tidal currents. A relationship between variations in suspended particulate matter concentration in the water body and digestion is proposed. It is suggested that increases in the levels of particulate matter, by stimulating feeding, cause a significant increase in the proportion of absorptive-phase tubules 4 to 6 h later.     

Synthetic fibers as an indicator of land application of sludge

Synthetic fabric fibers have been proposed as indicators of past spreading of wastewater sludge. Synthetic fiber detectability was examined in sludges (dewatered, pelletized, composted, alkaline-stabilized) and in soils from experimental columns and field sites applied with those sludge products. Fibers (isolated by water extraction and examined using polarized light microscopy) were detectable in sludge products and in soil columns over 5 years after application, retaining characteristics observed in the applied sludge. Concentrations mirrored (within a factor of 2) predictions based on soil dilution. Fibers were detectable in field site soils up to 15 years after application, again retaining the characteristics seen in sludge products. Concentrations correlated with residual sludge metal concentration gradients in a well-characterized field site. Fibers found along preferential flow paths and/or in horizons largely below the mixed layer suggest some potential for translocation. Synthetic fibers were shown to be rapid and semi-quantitative indicators of past sludge application.     

Continuous determination of fine particulate matter mass in the Salt Lake City Environmental Monitoring project: a comparison of real-time and conventional TEOM monitor results

Fine particulate matter (PM2.5) mass was determined on a continuous basis at the Salt Lake City Environmental Protection Agency Environmental Monitoring for Public Awareness and Community Tracking monitoring site in Salt Lake City, UT, using three different monitoring techniques. Hourly averaged PM2.5 mass data were collected during two sampling periods (summer 2000 and winter 2002) using a real-time total ambient mass sampler (RAMS), sample equilibration system (SES)-tapered element oscillating microbalance (TEOM), and conventional TEOM monitor. This paper compares the results obtained from the various monitoring systems, which differ in their treatment of semivolatile material (SVM; particle-bound water, semivolatile ammonium nitrate, and semivolatile organic compounds). PM2.5 mass results obtained by the RAMS were consistently higher than those obtained by the SES-TEOM and conventional TEOM monitors because of the RAMS ability to measure semivolatile ammonium nitrate and semivolatile organic material but not particle-bound water. The SES-TEOM monitoring system was able to account for an average of 28% of the SVM, whereas the conventional TEOM monitor loses essentially all of the SVM from the single filter during sampling. Occasional mass readings by the various TEOM monitors that are higher than RAMS results may reflect particle-bound water, which, under some conditions, is measured by the TEOM but not the RAMS.     

Relationship between the ATP content of subsurface material and the rate of biodegradation of alkylbenzenes and chlorobenzene

The rate of biotransformation of toluene in unconsolidated subsurface material from sites at Lula, Oklahoma, and Conroe, Texas, was compared to the ATP (adenosine triphosphate) content of these materials. The rate of toluene degradation decreased with decreasing ATP content. When ATP contents were at or less than 0.05 ng g⁻¹, biotransformation of toluene could not be detected (less than 1% of the initial concentration was degraded per week). At intermediate concentrations of ATP, 0.37 and 0.16 ngvg⁻¹, the rates of toluene degradation were 18 ± 4.5% and 25 ± 10% of the initial concentration per week. At ATP concentrations above 1 ng g⁻¹, the rates of toluene degradation exceeded 90% of the initial concentration per week. There was no simple relationship between ATP content and chlorobenzene degradation. Subsurface material that had been exposed to creosote wastes, and which degraded toluene rapidly, also degraded benzene, o-xylene, and m-xylene.     

Quantifying the effects of fumarate on in situ reductive dechlorination rates

In situ methods are needed to evaluate the effectiveness of chemical amendments at enhancing reductive dechlorination rates in groundwater that is contaminated with the priority pollutant, trichloroethene (TCE). In this communication, a method that utilizes single-well, “push–pull” tests to quantify the effects of chemical amendments on in situ reductive dechlorination rates is presented and demonstrated. Five push–pull tests were conducted in each of five monitoring wells located in a TCE-contaminated aquifer at the site of a former chemical manufacturing facility. Rates for the reductive dechlorination of the fluorinated TCE-surrogate, trichlorofluoroethene (TCFE), were measured before (test 1) and after (test 5) three successive additions (tests 2–4) of fumarate. Fumarate was selected to stimulate the growth and activity of indigenous microorganisms with the metabolic capability to reduce TCFE and TCE. In three wells, first-order rate constants for the reductive dechlorination of TCFE increased by 8.2–92 times following fumarate additions. In two wells, reductive dechlorination of TCFE was observed after fumarate additions but not before. The transformation behavior of fumarate was also monitored following each fumarate addition. Correlations between the reductive dechlorination of TCFE and the reduction of fumarate to succinate were observed, indicating that these reactions were supported by similar biogeochemical conditions at this site.     

Organic mercury levels among the Yanomama of the Brazilian Amazon Basin

The Catrimani River basin in northern Brazil is the home of the Yanomama and has been the site of renegade gold mining since 1980. Gold-mining operations release inorganic mercury (Hg) into the environment where it is organified and biomagnified in aquatic ecosystems. Ingestion of mercury-contaminated fish poses a potential hazard to fish-eating populations such as the Yanomama. We surveyed Hg levels in Yanomama villagers living near mined and unmined rivers in 1994 and 1995, and analyzed Hg levels in piranha caught by villagers. In 1994, 90 Yanomama Indians from 5 villages and in 1995, 62 Yanomama Indians from 3 villages participated in the studies. Four villages surveyed in 1994 were located directly on the Catrimani River, approximately 140-160 km downstream from past gold-mining activities. The other village surveyed in 1994 was situated on the unmined Ajaraní River. In 1995, 2 of the Catrimani River villages were revisited, and a third Yanomama village, on the unmined Pacu River, was surveyed. Blood organic mercury levels among all villagers surveyed ranged from 0 to 62.6 microg L(-1) (mean levels in each village between 21.2 microg L(-1) and 43.1 microg L(-1)). Mercury levels in piranha from the mined Catrimani River ranged from 235 to 1084 parts per billion (ppb). Nine of 13 piranhas, measuring 30 cm or longer had total mercury levels which exceeded mercury consumption limits (500 ppb) set by both the World Health Organization and the Brazilian Ministry of Health. Unexpectedly, high mercury levels were also observed in fish and villagers along the unmined Ajaraní and Pacu Rivers suggesting that indirect sources may contribute to environmental mercury contamination in the Amazon basin.     

Designing monitoring networks to represent outdoor human exposure

Measurements of outdoor human exposure to suspended particulate matter (PM) are always constrained by available resources. An effective network design requires tradeoffs between variables measured, the number of sampling locations, sample duration, and sampling frequency. Sampling sites are needed to represent neighborhood and urban spatial scales with minimal influences from nearby sources. Although most PM measurements for determining compliance with standards are taken over 24-h periods every third to sixth day, outdoor human exposure assessment requires measurements taken continuously throughout the day, preferably over durations of 1 h or less. More detailed particle size and chemistry data are also desirable, as smaller size fractions and specific chemicals may be better indicators of adverse health effects than total mass samples.     

Dissipation of oxytetracycline, chlortetracycline, tetracycline and doxycycline using HPLC-UV and LC/MS/MS under aquatic semi-field microcosm conditions

A mixture of four tetracyclines; oxytetracycline (OTC), chlortetracycline (CTC), tetracycline (TC), and doxycycline (DC) was applied in fifteen 12000l outdoor microcosms at four treatment levels plus controls each with three replicates (n = 3). The dissipation times of parent compounds were monitored and half-lives (DT50) of 1-4 days, depending on treatment level were recorded. This is in accordance with half-lives from previous findings in bench-top experiments. Parent compound DT50, were determined using HPLC-UV. Furthermore, the samples were analyzed for ten different tetracycline products using LC/MS/MS. Two products were found for chlortetracycline; 4-epi-anh-chlortetracyline and the iso-chlortetracycline. Iso-forms were only found for CTC and only at the highest treatment (300 microg l(-1)). The half-lives, trajectories, and relative amounts of the products were analogous for all four tetracyclines. DT50 for products were less than 1.2 days. Formation of 4-epi-anh-tetracyclines, occurred at neutral to weak alkaline conditions.     

Conservation Genetics of North American Freshwater Mussels Amblema and Megalonaias

Freshwater bivalves are among the most endangered groups of organisms in North America. Efforts to protect the declining mussel fauna are confounded by ambiguities associated with recognition of distinct evolutionary entities or species. This, in part, is due to the paucity of reliable morphological characters for differentiating taxa. We have employed allozymes and DNA sequence data to search for diagnosably distinct evolutionary entities within two problematic genera of unionid mussels, Amblema and Megalonaias. Within the genus Amblema three species are recognized based on our DNA sequence data for the mitochondrial 16S rRNA and allozyme data (Amblema neislerii, A. plicata, and A. elliotti). Only one taxonomically distinct entity is recognized within the genus Megalonaias—M. nervosa. Megalonaias boykiniana of the Apalachicolan Region is not diagnosable and does not warrant specific taxonomic status. Interestingly, Megalonaias from west of the Mississippi River, including the Mississippi, exhibited an allozyme and mtDNA haplotype frequency shift suggestive of an east-west dichotomy. The results of this study eliminate one subspecies of Amblema and increase the range of A. plicata. This should not affect the conservation status of "currently stable" assigned to A. plicata by Williams et al. (1993). The conservation status of A. elliotti needs to be reexamined because its distribution appears to be limited to the Coosa River System in Alabama and Georgia.