Did ice-age bovids spread tuberculosis?

Pathognomonic metacarpal undermining is a skeletal pathology that has been associated with Mycobacterium tuberculosis in bovids. Postcranial artiodactyl, perissodactyl, and carnivore skeletons were examined in major university and museum collections of North America and Europe for evidence of this and other pathology potentially attributable to tuberculosis. Among nonproboscidean mammals from pre-Holocene North America, bone lesions indicative of tuberculosis were restricted to immigrant bovids from Eurasia. No bone lesions compatible with diagnosis of tuberculosis were found in large samples of other pre-Holocene (164 Oligocene, 397 Miocene, and 1,041 Plio–Pleistocene) North American mammals, including 114 antilocaprids. Given the unchanged frequency of bovid tubercular disease during the Pleistocene, it appears that most did not die from the disease but actually reached an accommodation with it (as did the mastodon) (Rothschild and Laub 2006). Thus, they were sufficiently long-lived to assure greater spread of the disease. The relationships of the proboscidean examples need further study, but present evidence suggests a Holarctic spread of tuberculosis during the Pleistocene, with bovids acting as vectors. While the role of other animals in the transmission of tuberculosis could be considered, the unique accommodation achieved by bovids and mastodons makes them the likely “culprits” in its spread.     

The first fossil fungus gardens of Isoptera: oldest evidence of symbiotic termite fungiculture (Miocene, Chad basin)

Higher termites of the subfamily Macrotermitinae (fungus-growing termites) are known to build fungus gardens where a symbiotic fungus (Termitomyces sp.) is cultivated. The fungus grows on a substrate called fungus comb, a structure built with the termites’ own faeces. Here we present the first fossil fungus combs ever found in the world. They were extracted from 7-million-year-old continental sandstone (Chad basin). Fossilized fungus combs have an ovoid morphology with a more or less flattened concave base and a characteristic general alveolar aspect. Under lens, they display a typical millimetre-scale pelletal structure. The latter, as well as the general shape and alveolar aspect, are similar to the morphology of fungus combs from extant fungus-growing termites.     

A spatial scan statistic for zero-inflated Poisson process

The scan statistic is widely used in spatial cluster detection applications of inhomogeneous Poisson processes. However, real data may present substantial departure from the underlying Poisson process. One of the possible departures has to do with zero excess. Some studies point out that when applied to data with excess zeros, the spatial scan statistic may produce biased inferences. In this work, we develop a closed-form scan statistic for cluster detection of spatial zero-inflated count data. We apply our methodology to simulated and real data. Our simulations revealed that the Scan-Poisson statistic steadily deteriorates as the number of zeros increases, producing biased inferences. On the other hand, our proposed Scan-ZIP and Scan-ZIP+EM statistics are, most of the time, either superior or comparable to the Scan-Poisson statistic.     

Impact of helpers on colony productivity in a primitively eusocial bee

Small societies of totipotent individuals are good systems in which to study the costs and benefits of group living that are central to the origin and maintenance of eusociality. For instance, in eusocial halictid bees, some females remain in their natal nest to help rear the next brood. Why do helpers stay in the nest? Do they really help, and if yes, is their contribution large enough to voluntarily forfeit direct reproduction? Here, we estimate the impact of helpers on colony survival and productivity in the sweat bee Halictus scabiosae. The number of helpers was positively associated with colony survival and productivity. Colonies from which we experimentally removed one helper produced significantly fewer offspring. However, the effect of helper removal was very small, on average. From the removal experiment, we estimated that one helper increased colony productivity by 0.72 additional offspring in colonies with one to three helpers, while the increase was smaller and not statistically significant in larger colonies. We conclude that helpers do actually help in this primitively eusocial bee, particularly in small colonies. However, the resulting increase in colony productivity is low, which suggests that helpers may be constrained in their role or may attempt to reproduce.     

Analysis of global and local population stratification of finless porpoises <Emphasis Type="Italic">Neophocaena phocaenoides</Emphasis> in Chinese waters

The existence of three distinct populations is widely accepted for the finless porpoise (Neophocaena phocaenoides) in Chinese waters: the Yellow Sea, Yangtze River, and South China Sea populations. Here, we use nine species-specific microsatellite loci, the complete mitochondrial DNA control region (912 bp), and the complete mitochondrial cytochrome b gene (1,140 bp) to further investigate potential population stratification in the Yellow Sea using 147 finless porpoise samples from the Bohai Sea and adjacent northern Yellow Sea, two regions that were largely underrepresented in previous genetic studies. Our F-statistics analyses confirm the previously described three populations, but further demonstrate significant genetic differentiation between the [Bohai + northern Yellow] Sea and the southern Yellow Sea. On the other hand, median-joining network analyses do not exhibit well-differentiated haplotype groups among different geographic populations, suggesting the existence of shared ancestral haplotypes. Levels of microsatellite diversity are moderate to high (mean H _E = 0.794) among the 147 [Bohai + northern Yellow] Sea finless porpoises and no recent bottleneck was detected, whereas mtDNA control region and cytochrome b gene diversity is low to moderate. The microsatellite genotypic and mtDNA haplotypic data also confirm the presence of mother-calf pairs in single-net bycatch cases. The results presented here highlight the necessity to treat the [Bohai + northern Yellow] Sea population (highly impacted by anthropogenic threats) as a separate Management Unit.     

A methodological framework for integrating computational fluid dynamics and ecological models applied to juvenile freshwater mussel dispersal in the Upper Mississippi River

Interdisciplinary research in hydraulics and ecology for river management and restoration must integrate processes that occur over a wide range of spatial and temporal scales, which presents a challenge to ecohydraulics modelers. Computational fluid dynamics (CFD) models are being more widely used to determine flow fields for ecohydraulics applications. In the Upper Mississippi River (UMR), the mussel dynamics model was developed as a tool for management and conservation of freshwater mussels (Unionidae), which are benthic organisms, imperiled in North America, that are inextricably linked with the hydraulics of river flow. We updated the juvenile dispersal component of the mussel dynamics model by using stochastic Lagrangian particle tracking in a three dimensional flow field output from CFD models of reaches in the UMR. We developed a methodological framework to integrate hydrodynamic data with the mussel dynamics model, and we demonstrate the use of the juvenile dispersal model employed within the methodological framework in two reaches of the UMR. The method was used to test the hypothesis that impoundment affects the relationship of some hydraulic parameters with juvenile settling distribution. Simulation results were consistent with this hypothesis, and the relationships of bed shear stress and Froude number with juvenile settling were altered by impoundment most likely through effects on local hydraulics. The methodological framework is robust, integrates Eulerian and Lagrangian reference frameworks, and incorporates processes over a wide range of temporal and spatial scales, from watershed scale hydrologic processes (decades), to reach scale (km) processes that occur over hours or days, and turbulent processes on spatial scales of meter to millimeter and times scales of seconds. The methods are presently being used to assess the impacts of pre- and early post-settlement processes on mussel distributions, including the effects of bed shear stress, and the sensitivity of the location of the host fish when juveniles excyst, on juvenile settling distribution.     

Reproductive conflicts and egg discrimination in a socially polymorphic ant

The ability to discriminate against competitors shapes cooperation and conflicts in all forms of social life. In insect societies, workers may detect and destroy eggs laid by other workers or by foreign queens, which can contribute to regulate reproductive conflicts among workers and queens. Variation in colony kin structure affects the magnitude of these conflicts and the diversity of cues used for discrimination, but the impact of the number of queens per colony on the ability of workers to discriminate between eggs of diverse origin has so far not been investigated. Here, we examined whether workers from the socially polymorphic ant Formica selysi distinguished eggs laid by nestmate workers from eggs laid by nestmate queens, as well as eggs laid by foreign queens from eggs laid by nestmate queens. Workers from single- and multiple-queen colonies discriminated worker-laid from queen-laid eggs, and eliminated the former. This suggests that workers collectively police each other in order to limit the colony-level costs of worker reproduction and not because of relatedness differences towards queens’ and workers’ sons. Workers from single-queen colonies discriminated eggs laid by foreign queens of the same social structure from eggs laid by nestmate queens. In contrast, workers from multiple-queen colonies did not make this distinction, possibly because cues on workers or eggs are more diverse. Overall, these data indicate that the ability of F. selysi workers to discriminate eggs is sufficient to restrain worker reproduction but does not permit discrimination between matrilines in multiple-queen colonies.     

Transport and fate of nitrate in a glacial outwash aquifer in relation to ground water age,land use practices,and redox processes

A combination of ground water modeling, chemical and dissolved gas analyses, and chlorofluorocarbon age dating of water was used to determine the relation between changes in agricultural practices, and NO3- concentrations in ground water of a glacial outwash aquifer in west-central Minnesota. The results revealed a redox zonation throughout the saturated zone with oxygen reduction occurring near the water table, NO3- reduction immediately below it, and then a large zone of ferric iron reduction, with a small area of sulfate (SO4(2-)) reduction and methanogenesis (CH4) near the end of the transsect. Analytical and NETPATH modeling results supported the hypothesis that organic carbon served as the electron donor for the redox reactions. Denitrification rates were quite small, 0.005 to 0.047 mmol NO3- yr(-1), and were limited by the small amounts of organic carbon, 0.01 to 1.45%. In spite of the organic carbon limitation, denitrification was virtually complete because residence time is sufficient to allow even slow processes to reach completion. Ground water sample ages showed that maximum residence times were on the order of 50 to 70 yr. Reconstructed NO3- concentrations, estimated from measured NO3- and dissolved N gas showed that NO3- concentrations have been increasing in the aquifer since the 1940s, and have been above the 714 micromol L(-1) maximum contaminant level at most sites since the mid- to late-1960s. This increase in NO3- has been accompanied by a corresponding increase in agricultural use of fertilizer, identified as the major source of NO3- to the aquifer.     

The first monoclonal antibody-based,matrix-resistant immunoassay for the carbamate herbicide asulam,in water

To date, no ligand binding assay has been described for the carbamate herbicide asulam, although a variety of physical methods, dependent on pre-concentration of water samples, have been documented for its assessment. However, asulam is increasingly used in sensitive agricultural areas, and statutory regulations concerning its monitoring will undoubtedly become more stringent. Antibodies are optimal partners in ligand binding assays, but it is commonly understood by immunological researchers that where no antibody reactive with a particular antigen has yet been described, the immunogenicity of the antigen may be particularly restricted. By the expedient of employing a specialised approach to final immunisation with an asulam-protein conjugate, prior to the immortalisation of a specific anti-asulam antibody-producing cell, we have succeeded in generating a monoclonal antibody reactive specifically with asulam that can be configured in a convenient immunoassay. This antibody may be used flexibly in a number of ways: small sample volumes of 10 microl can be assessed to sensitivities of 4.35 x 10(-7) M (10 microg L(-1)) while avoiding discrepancies contributed by the assay matrix; this antibody-based assay can also be formatted to deliver sensitivities at levels stipulated by regulatory authorities (e.g., 4.35 x 10(-9) M or 0.1 microg L(-1)) directly from a water sample, without prior pre-concentration.     

DETERMINING NUTRIENT EXPORT COEFFICIENTS AND SOURCE LOADING UNCERTAINTY USING IN‐STREAM MONITORING DATA1

ABSTRACT: Over a three‐year period, flow and nutrients were monitored at 13 sites in the upper North Bosque River watershed in Texas. Drainage areas above sampling sites differed in percent of dairy waste application fields, forage fields, wood/range, and urban land area. A multiple regression approach was used to develop total phosphorus (TP) and total nitrogen (TN) export coefficients for the major land uses in these heterogeneous drainage areas. The largest export coefficients were associated with dairy waste application fields followed by urban, forage fields, and wood/range. An empirical model was then established to assess nutrient contribution by major sources using developed export coefficients and point source loadings from municipal wastewater treatment. This model was verified by comparison of estimated loadings to measured in‐stream data. Monte Carlo simulation techniques were applied to provide an uncertainty analysis for nutrient loads by source, based on the variance associated with each export coefficient. The largest sources of nutrients contributing to the upper North Bosque River were associated with dairy waste application fields and forage fields, while the greatest relative uncertainty in source contribution was associated with loadings from urban and wood/range land uses.