Specialization of the entomopathogenic nematode Steinernema scapterisci with its mutualistic Xenorhabdus symbiont

The level of specialization of the entomopathogenic nematode Steinernema scapterisci with its native Xenorhabdus symbiont was investigated by testing (1) the influence of non-native bacterial strains on nematode fitness within an insect-host (Galleria mellonella) and (2) specificity of the association between the nematode infective juveniles and non-native bacteria. All non-native Xenorhabdus spp. or Photorhabdus spp. strains tested were mutualistically associated with other entomopathogenic nematodes in nature. We showed that most of the Xenorhabdus spp. strains tested led to an insignificant difference of the nematode's fitness compared to the one obtained with the native bacterium. Conversely, Photorhabdus spp. strains almost entirely abolished nematode reproduction. The phylogenetic analysis of bacterial strains tested, showed that there was a negative correlation between S. scapterisci's reproduction rate with a bacterial strain and the genetic distance of this bacterial strain from the native one. We also showed that the native bacterium was the only one which was transmitted by S. scapterisci's infective juveniles. All these results, suggested a specialization between S. scapterisci and its native Xenorhabdus. As the same phenomenon was already demonstrated in the association between S. carpocapsae and X. nematophila, specialization between partners would not be an exception in entomopathogenic nematode-bacteria interactions. Nevertheless, S. scapterisci showed a dramatically higher compatibility with non-native Xenorhabdus spp. strains than did S. carpocapsae, suggesting differences in the co-evolutionary processes between nematodes and bacteria in these two model systems.Table 1 List of the bacterial strains, native nematode species with their geographical origin, accession numbers of bacterial 16S rDNA partial sequences and number of combination experiments for each bacterium tested

Weed seedbank evaluating method to generate spatial distribution maps

The objective of this work was to develop a fast and practical method of weed seedbank evaluation to generate spatially distributed maps for use in site-specific weed management. Soil cores were collected at 0.20 m depth, air-dried, and then submitted to seedling growth in greenhouse. The sampling grid of 20 by 20 m was georeferenced by Global Positioning System, obtaining 73 soil cores with three replicates. During the greenhouse trial, there were two peaks of weed seedling growth: one in 119 days after water irrigation and another after KNO3 application. Weeds seedbank maps were obtained at different stages of seedling growth. The Pearson correlation was 0.99 for Brachiaria plantaginea seedbank map, 0.95 for Commelina benghalensis, and 0.85 for Cyperus rotudus generated at 119 days compared with 392 days after seedling growth in the greenhouse. The Brachiaria plantaginea seedbank map evaluated at 35 days presented correlation of 0.97 with 392 days. It was concluded that, for site-specific weed seedbank management, the evaluation of seedling growth in greenhouse until the first emergence peak is enough to generate weed seedbank maps.     

Mercury accumulation in soils and plants in the Almadén mining district, Spain: one of the most contaminated sites on Earth

Although mercury (Hg) mining in the Almadén district ceased in May 2002, the consequences of 2000 years of mining in the district has resulted in the dissemination of Hg into the surrounding environment where it poses an evident risk to biota and human health. This risk needs to be properly evaluated. The uptake of Hg has been found to be plant-specific. To establish the different manners in which plants absorb Hg, we carried out a survey of Hg levels in the soils and plants in the most representative habitats of this Mediterranean area and found that the Hg concentrations varied greatly and were dependent on the sample being tested (0.13–2,695 μg g⁻¹ Hg). For example, the root samples had concentrations ranging from 0.06 (Oenanthe crocata, Rumex induratus) to 1095 (Polypogon monspeliensis) μg g⁻¹ Hg, while in the leaf samples, the range was from 0.16 (Cyperus longus) to 1278 (Polypogon monspeliensis) μg g⁻¹ Hg. There are four well-differentiated patterns of Hg uptake: (1) the rate of uptake is constant, independent of Hg concentration in the soil (e.g., Pistacia lentiscus, Quercus rotundifolia); (2) after an initial linear relationship between uptake and soil concentration, no further increase in Hg_plant is observed (e.g., Asparagus acutifolius, Cistus ladanifer); (3) no increase in uptake is recorded until a threshold is surpassed, and thereafter a linear relationship between Hg_plant and Hg_soil is established (e.g., Rumex bucephalophorus, Cistus crispus); (4) there is no relationship between Hg_plant and Hg_soil (e.g., Oenanthe crocata and Cistus monspeliensis). Overall, the Hg concentrations found in plants from the Almadén district clearly reflect the importance of contamination processes throughout the study region.     

Statistical evaluation of chronic toxicity data on aquatic organisms for the hazard identification: the chemicals toxicity distribution approach

Presently, in the Globally Harmonised System of Classification and Labelling of Chemicals the classification of substances for long-term effects to aquatic life is based on acute toxicity in combination with degradation and/or bioaccumulation potential. Recently an OECD Working Group was created to develop the classification scheme to accommodate chronic toxicity data related to aquatic organisms for assigning a chronic hazard category. This study focuses on a new approach for setting chronic toxicity cut-off values based on Chemicals Toxicity Distributions (CTDs). A CTD is obtained through statistical fitting of the data used by regulatory bodies for setting hazard-based classifications. The CTDs were made using the lowest aquatic NOEC value of each chemical. A review of different toxicological sources reporting acute aquatic toxicities was carried out. Initially, the data were arranged according to the specific source and distributions for key taxonomic groups (i.e. fishes, crustaceans and algae) were evaluated separately. In most cases, no significant departures from normality were observed. Thereafter, a compiled database containing >900 values was developed and the CTDs were constructed for each taxonomic group. Significant deviation from normality (P < 0.05) was observed in the fishes and crustaceans' CTDs. However, this deviation was apparently produced by the presence of only seven values with NOECs <1 x 10(-5) mg l(-1), while high correlation between the data and the normal scores (r-values>or= 0.989) indicated that the data were samples from normal distributions. From these observations, potential cut-off values would allow quantitative estimations of the percentage of chemicals falling into each specific category. This approach results in a simple classification hazard scheme where most chemicals are covered in one of the categories, allowing a clear distribution of the chemicals among three categories for chronic toxicity.     

Decolourization of synthetic dyes by Trametes hirsuta in expanded-bed reactors

The present paper studies the decolourization of different synthetic dyes (Indigo Carmine, Bromophenol Blue, Methyl Orange and Poly R-478) by the white-rot fungus Trametes hirsuta at bioreactor scale under solid-state conditions, operating with ground orange peelings as a support-substrate. Dye decolourization was performed in both batch and continuous mode. Batch cultivation led to high decolourization percentages in a short time (100% for Indigo Carmine in 3h and 85% for Bromophenol Blue in 7 h). As for continuous cultivation, different hydraulic retention times (HRT) were studied (0.8, 1, 1.5 and 3d). The highest decolourization percentages were obtained operating at a HRT of 3d, especially for the dyes Methyl Orange and Poly R-478 (81.4% and 46.9%, respectively). This is a very interesting result, since there are few studies dealing with the continuous decolourization of dyes at bioreactor scale by fungal laccases.     

Role of cyanobacteria in the biodegradation of crude oil by a tropical cyanobacterial mat

Cyanobacterial mats are ubiquitous in tropical petroleum-polluted environments. They form a high biodiversity microbial consortium that contains efficient hydrocarbons degraders. A cyanobacterial mat collected from a petroleum-contaminated environment located in Indonesia was studied for its biodegradation potential. In the field, the natural mat was shown to degrade efficiently the crude oil present in the environment. This natural mat demonstrated also a strong activity of degradation on model crude oil under laboratory conditions. In axenic cultures, the monospecific cyanobacterium Phormidium animale that constitute the bulk of the biomass did not exhibit any degradative capacity on hydrocarbons in the range of C13-C35 carbon atom number either in autotrophic or heterotrophic conditions. It was concluded that this cyanobacterial strain living on a heavily contaminated site had no direct effect on biodegradation of crude oil, the degradation activity being exclusively achieved by the other microorganisms present in the microbial consortium of the mat.     

Coupling of 2,4,6-trinitrotoluene (TNT) metabolites onto humic monomers by a new laccase from Trametes modesta

During degradation of trinitrotoluene (TNT) by Trametes modesta, addition of humic monomers prevented the accumulation of all major stable TNT metabolites (aminodinitrotoluenes [AMDNT]) by at least 92% in the presence of 200 mM ferulic acid and guaiacol. Acute toxicity tests with individual TNT metabolites and in T. modesta cultures supplemented with 200 microM TNT demonstrated that the TNT biodegradation process lead to less toxic metabolites. Toxicity decreased in the order TNT>4-HADNT (4-hydroxylaminodinitrotoluene)>2-HADNT>2,6-DNT (2,6-dinitrotoluene)>2',2',6,6-azoxytetranitrotoluene>4-AMDNT>2-AMDNT>2,4-diamninonitrotoluene (2,4-DAMNT) while 2,4-DNT and 2,6-DAMNT were the least toxic. Ferulic acid is the best candidate for immobilization TNT biodegradation metabolites since it prevented the accumulation of AMDNTs in cultures during TNT biodegradation and its products were less toxic. All humic monomers were very effective in immobilizing 2-HADNT [100%], 4-HADNT [100%] and 2,2,6,6-azoxytetranitrotoluene [100%]. Two distinct laccase isoenzymes (LTM1 and LTM2) potentially involved in immobilization of TNT degradation products were purified to electrophoretic homogeneity. LTM1 and LTM2 have molecular weights of 77.6 and 52.5 kDa, are 18% and 24% glycosylated, have pI values of 3.6 and 4.2, respectively. Both enzymes oxidized all the typical laccase substrates tested. LTM1 showed highest kinetic constants (K(m)=0.03 microM; K(cat)=8.8 4x 10(7)s(-1)) with syringaldazine as substrate.     

The effect of emergent macrophytes on the dynamics of sulfur species and trace metals in wetland sediments

This study focuses on the effect of plants on the biogeochemistry of sulfur species and the mobility of heavy metals in wetland sediments. Results showed that, in the presence of plants, sediments had elevated sulfate concentrations in the rhizosphere during the growing season, ranging from 0.2 to 6.20 mmol L(-1), whereas only a small difference in the sulfate profiles between vegetated and non-vegetated sediments was observed during senescence. Based on the sulfate concentration increase, the oxygen release rate from the roots to achieve the corresponding oxidation of sulfide was estimated as 0.85 g m(-2) day(-1). Evapotranspiration-induced advection is a major contributor to the transport of sulfate from the water column into the sediments, and also allows dissolved trace metals (i.e. Cd, Pb, and Zn) to be transported into the sediments and react with the acid volatile sulfide pool, resulting in the immobilization of trace metals in these sediments.