A method for assigning species into groups based on generalized Mahalanobis distance between habitat model coefficients

Habitat association models are commonly developed for individual animal species using generalized linear modeling methods such as logistic regression. We considered the issue of grouping species based on their habitat use so that management decisions can be based on sets of species rather than individual species. This research was motivated by a study of western landbirds in northern Idaho forests. The method we examined was to separately fit models to each species and to use a generalized Mahalanobis distance between coefficient vectors to create a distance matrix among species. Clustering methods were used to group species from the distance matrix, and multidimensional scaling methods were used to visualize the relations among species groups. Methods were also discussed for evaluating the sensitivity of the conclusions because of outliers or influential data points. We illustrate these methods with data from the landbird study conducted in northern Idaho. Simulation results are presented to compare the success of this method to alternative methods using Euclidean distance between coefficient vectors and to methods that do not use habitat association models. These simulations demonstrate that our Mahalanobis-distance-based method was nearly always better than Euclidean-distance-based methods or methods not based on habitat association models. The methods used to develop candidate species groups are easily explained to other scientists and resource managers since they mainly rely on classical multivariate statistical methods.     

NATURAL RESTABILIZATION OF STREAM CHANNELS IN URBAN WATERSHEDS1

ABSTRACT: Stream channels are known to change their form as a result of watershed urbanization, but do they restabilize under subsequent conditions of constant urban land use? Streams in seven developed and developing watersheds (drainage areas 5–35 km²) in the Puget Sound lowlands were evaluated for their channel stability and degree of urbanization, using field and historical data. Protocols for determining channel stability by visual assessment, calculated bed mobility at bankfull flows, and resurveyed cross‐sections were compared and yielded nearly identical results. We found that channel restabilization generally does occur within one or two decades of constant watershed land use, but it is not universal. When (or if) an individual stream will restabilize depends on specific hydrologic and geomorphic characteristics of the channel and its watershed; observed stability is not well predicted by simply the magnitude of urban development or the rate of ongoing land‐use change. The tendency for channel restabilization suggests that management efforts focused primarily on maintaining stability, particularly in a still‐urbanizing watershed, may not always be necessary. Yet physical stability alone is not a sufficient condition for a biologically healthy stream, and additional rehabilitation measures will almost certainly be required to restore biological conditions in urban systems.     

Phosphates for Pb immobilization in soils: a review

In its soluble ionic forms, lead (Pb) is a toxic element occurring in waters and soils mainly as the result of human activities. The bioavailability of lead ions can be decreased by complexation with various materials in order to decrease their toxicity. Pb chemical immobilization using phosphate addition is a widely accepted technique to immobilize Pb from aqueous solution and contaminated soils. The application of different P amendments cause Pb in soils to shift from forms with high availability to the most strongly bound Pb fractions. The increase of Pb in the residual or insoluble fraction results from formation of pyromorphite Pb₅(PO₄)₃X where X = F, Cl, Br, OH, the most stable environmental Pb compounds under a wide range of pH and Eh natural conditions. Accidental pyromorphite ingestion does not yield bioavailable lead, because pyromorphite is insoluble in the intestinal tract. Numerous natural and synthetic phosphates materials have been used to immobilize Pb: apatite and hydroxyapatite, biological apatite, rock phosphate, soluble phosphate fertilizers such as monoammonium phosphate, diammonium phosphate, phosphoric acid, biosolids rich in P, phosphatic clay and mixtures. The identification of pyromorphite in phosphate amended soils has been carried out by different non destructive techniques such as X-ray diffraction, scanning electron microscopy coupled with energy dispersive X-ray spectroscopy, X-ray absorption fine structure, transmission electron microscopy and electron microprobe analysis. The effectiveness of in situ Pb immobilization has also been evaluated by selective sequential extraction, by the toxicity leaching procedure and by a physiologically based extraction procedure simulating metal ingestion and gastrointestinal bioavailability to humans. Efficient Pb immobilization using P amendments requires increasing the solubility of the phosphate phase and of the Pb species phase by inducing acid conditions. Although phosphorus addition seems to be highly effective, excess P in soil and its potential effect on eutrophication of surface water, and the possibility of As enhanced leaching remains a concern. The use of mixed treatments may be a useful strategy to improve their effectiveness in reducing lead phyto- and bioavailability.     

Integrating forage,wildlife, water,and fish projections with timber projections at the regional level: A case study in southern United States

The impact of timber management and land-use change on forage production, turkey and deer abundance, red-cockaded woodpecker colonies, water yield, and trout abundance was projected as part of a policy study focusing on the southern United States. The multiresource modeling framework used in this study linked extant timber management and land-area policy models with newly developed models for forage, wildlife, fish, and water. Resource production was integrated through a commonly defined land base that could be geographically partitioned according to individual resource needs. Resources were responsive to changes in land use, particularly human-related, and timber management, particularly the harvest of older stands, and the conversion to planted pine.     

Understanding the North–South knowledge divide and its implications for policy: a quantitative analysis of the generation of scientific knowledge in the environmental sciences

The paper investigates the scientific knowledge divide in the environmental sciences between developed and developing countries and explores the implications and impacts on both science and policymaking. Quantitative data analysis of more than 6400 scientific papers published in 1993–2003 yield evidence for a growing divide in authorship, publication rates, and location of scientific research in nine environmental journals with high impact factor ratings. In addition to this severe imbalance in publication rates between developed and developing countries, we also find a research bias toward certain eco-climatic zones. More than 80% of papers are published in and about temperate and cold eco-climatic zones. Only 13% of the papers in our study are based on research in the dry sub-tropical and tropical zones, although these eco-climatic zones account for more than 52% of the world's land area. Based on these results, we discuss how the limited empirical source and focus of environmental research undermine the claims of universality of environmental science and what consequences this may have on policymaking processes at different levels. Finally, we briefly explore some short- and long-term strategies to address the knowledge divide.     

Prenatal ultrasonographic diagnosis of radial-ray reduction malformations

Radial-ray reduction malformations (RRRMs) may occur isolated or in association with other anomalies. The data of seven fetuses born with RRRMs were collected. Six fetuses had associated lethal abnormalities of the central nervous system, urogenital system, and/or heart, detected by ultrasound. In five cases, it was possible to establish the precise diagnosis, enabling an informed prognosis and subsequent genetic counselling. The diagnoses were: Edwards syndrome (n=3), VACTERL association (n=1), and Poland-Moebius-like complex (n= 1). In two cases, a complete diagnosis was not possible because of inadequate evaluation of these fetuses before and/or after birth. A proposal is given for the diagnostic approach for infants with RRRMs detected in the antenatal period by means of ultrasonography.     

Familial congenital diaphragmatic hernia: Prenatal diagnosis,management, and outcome

Congenital diaphragmatic hernia (CDH) is a developmental defect of as yet unknown aetiology which accounts for 8 per cent of all major congenital anomalies and is associated with up to 80 per cent mortality despite optimal postnatal treatment. The risk of recurrence of CDH for future sibs after one affected infant is about 2 per cent. A multifactorial/threshold inheritance pattern with an observed high male:female sex ratio is currently favoured for the rare occurrence of familial CDH, although other modes of inheritance have also been described. We report three cases of familial CDH, two of whom were brother and sister sibs and the third was a first cousin, born within 18 months of each other. The diagnosis was by ultrasound and there were several factors predicting a poor outcome. The mortality in this group was 100 per cent. The prenatal diagnosis, treatment options, the unusual genetic aspects, outcome, and the pathology involved are discussed.     

Defense mechanisms and antipredator behavior in two sympatric species of spiny lobsters, Panulirus argus and P. guttatus

The congeneric spiny lobsters Panulirus argus and P. guttatus co-occur throughout the Caribbean Sea, where they may share the coral reef habitat. Despite their phylogenetic closeness, both species have many different life-history traits that may partially explain their coexistence. However, even though both species may face the same predators, their defense mechanisms and antipredator strategies had not been compared. We compared the performance between species in 18 morphological and behavioral defense mechanisms commonly expressed by most spiny lobsters, including predator-avoidance mechanisms (activity schedule, sheltering behavior, delay to disturbance, and effect of conspecific damage-released scents on shelter choice) as well as antipredator mechanisms (body size, several parameters of the escape response and limb autospasy, clinging strength, antennal strength, and cooperative defense). As hypothesized, both species expressed all these defense mechanisms (except cooperative defense, shown only by P. argus), reflecting their phylogenetic closeness, but performed significantly differently in most, in accordance with their particular ontogenetic traits. Their comparative performance in individual defense mechanisms as well as the antipredator strategies displayed by groups of lobsters of each species in the presence of a common predator (the triggerfish Balistes vetula) showed that, in general, the defensive behavioral type of P. argus is more bold and that of P. guttatus more shy. Therefore, their distinct defensive behaviors contribute to their niche differentiation.     

Trace gases and particulate matter emissions from wildfires and agricultural burning in Northeastern Mexico during the 2000 fire season

An inventory of air pollutants emitted from forest and agricultural fires in Northeastern Mexico for the period of January to August of 2000 is presented. The emissions estimates were calculated using an emissions factor methodology. The inventory accounts for the emission of carbon monoxide (CO), methane, nonmethane hydrocarbons, ammonia, nitrogen oxides, and particulate matter (PM). Particulate matter emissions include estimates for fine PM and coarse PM. A total of 2479 wildfires were identified in the domain for the period of interest, which represented approximately 810,000 acres burned and 621,130 short tons emitted (81% being CO). The main source of information used to locate and estimate the extent of the fires came from satellite imagery. A geographic information system was used to determine the type of vegetation burned by each fire. More than 54% of the total area burned during the period of study was land on the State of Tamaulipas. However, >58% of the estimated emissions came from the State of Coahuila. This was because of the mix of vegetation types burned in each state. With respect to the temporal distribution, 76.9% of the fires occurred during the months of April and May consuming almost 78% of the total area burned during the period of study. Analysis of wind forward trajectories of air masses passing through the burned areas and 850-mb wind reanalyses indicate possible transboundary transport of the emissions from Mexico to the United States during the occurrence of the major wildfires identified.     

Identification of some plasticizers compounds in landfill leachate

In this work it was described a simple method for extraction of plasticizer compounds (mainly phthalate esters and bisphenol A (BPA)) from landfill leachate samples. The samples were submitted to an extraction procedures based on precipitation, solid phase extraction (SPE) and ionic exchange chromatography (IEC). Firstly the landfill leachate sample was acidified by addition of HCl concentrated, in order to precipitate the organic compounds that are less soluble in water. The precipitate was washed with several solvents. The aqueous phase was then submitted to SPE with XAD-4 resin and IEC with Amberlyst A-27 resin. The instrumental analysis was performed by gas chromatography with mass spectrometer detector (GC/MSD) and the compounds were identified by the GC/MSD library (Wiley) and by using some standard substances. These methodologies allow the isolation and identification of the following compounds: dioctylphthalate, diisobutilphthalate, BPA, benzoic acid, palmitic acid and diisopentylphthalate. The methods are very simple, rapid and selective, for plasticizers extraction from landfill leachate matrices.